Wall clock time and date at job start Tue Mar 31 2020 18:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34487 * 126.83173 * 2 1 4 4 N 1.36441 * 108.85471 * 179.88122 * 3 2 1 5 5 H 0.97006 * 124.85374 * 180.16561 * 4 3 2 6 6 C 1.34668 * 110.30010 * 0.40398 * 4 3 2 7 7 C 1.50692 * 125.80314 * 179.73617 * 6 4 3 8 8 C 1.50700 * 109.47629 * 266.63131 * 7 6 4 9 9 N 1.34766 * 120.00307 * 185.13121 * 8 7 6 10 10 O 1.21280 * 119.99312 * 5.13046 * 8 7 6 11 11 C 1.36768 * 108.39474 * 359.75827 * 6 4 3 12 12 C 1.47261 * 126.94213 * 179.97438 * 11 6 4 13 13 O 1.21629 * 119.99697 * 265.10531 * 12 11 6 14 14 N 1.34769 * 120.00164 * 85.10399 * 12 11 6 15 15 C 1.47432 * 125.64673 * 4.52493 * 14 12 11 16 16 C 1.55128 * 104.72131 * 155.81945 * 15 14 12 17 17 C 1.55160 * 101.48593 * 37.29371 * 16 15 14 18 18 C 1.47026 * 125.65308 * 184.83604 * 14 12 11 19 19 H 1.08999 * 109.87542 * 300.43901 * 18 14 12 20 20 C 1.52998 * 109.88007 * 61.60068 * 18 14 12 21 21 N 1.46497 * 109.46848 * 183.70562 * 20 18 14 22 22 C 1.36938 * 120.00134 * 175.02747 * 21 20 18 23 23 H 1.08006 * 119.99635 * 4.99079 * 22 21 20 24 24 C 1.38808 * 120.00541 * 184.98663 * 22 21 20 25 25 N 1.31618 * 120.00279 * 184.83414 * 24 22 21 26 26 Si 1.86802 * 119.99685 * 4.84216 * 24 22 21 27 27 H 1.48500 * 109.47180 * 94.58815 * 26 24 22 28 28 H 1.48496 * 109.47154 * 214.58830 * 26 24 22 29 29 H 1.48498 * 109.46911 * 334.59050 * 26 24 22 30 30 H 1.09010 * 109.46720 * 269.67867 * 1 2 3 31 31 H 1.08996 * 109.47255 * 149.68967 * 1 2 3 32 32 H 1.08994 * 109.47732 * 29.68320 * 1 2 3 33 33 H 1.08003 * 125.56948 * 0.02562 * 3 2 1 34 34 H 1.09010 * 109.47159 * 26.63174 * 7 6 4 35 35 H 1.08997 * 109.47228 * 146.62806 * 7 6 4 36 36 H 0.97000 * 120.00296 * 359.97438 * 9 8 7 37 37 H 0.97004 * 120.00345 * 179.97438 * 9 8 7 38 38 H 1.09006 * 110.36474 * 274.74831 * 15 14 12 39 39 H 1.08998 * 110.36405 * 37.06735 * 15 14 12 40 40 H 1.09000 * 111.18907 * 279.19066 * 16 15 14 41 41 H 1.09002 * 110.90379 * 155.27583 * 16 15 14 42 42 H 1.08998 * 110.71944 * 205.96915 * 17 16 15 43 43 H 1.09008 * 110.71814 * 82.69600 * 17 16 15 44 44 H 1.08998 * 109.47217 * 303.70770 * 20 18 14 45 45 H 1.09005 * 109.47238 * 63.70438 * 20 18 14 46 46 H 0.96999 * 120.00352 * 355.02509 * 21 20 18 47 47 H 0.97003 * 120.00081 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6110 0.6553 0.0027 5 1 4.3840 1.2414 0.0055 6 6 3.6657 -0.6902 -0.0045 7 6 4.9226 -1.5215 -0.0098 8 6 5.2945 -1.8608 -1.4302 9 7 6.3303 -2.6870 -1.6766 10 8 4.6616 -1.3902 -2.3516 11 6 2.3864 -1.1741 -0.0065 12 6 1.9750 -2.5880 -0.0144 13 8 1.7182 -3.1408 -1.0670 14 7 1.8830 -3.2695 1.1446 15 6 2.0722 -2.7023 2.4923 16 6 1.2820 -3.6494 3.4331 17 6 1.5561 -5.0309 2.7821 18 6 1.5837 -4.7032 1.2744 19 1 0.6126 -4.9207 0.8299 20 6 2.6721 -5.5265 0.5827 21 7 2.3202 -6.9474 0.6404 22 6 3.0972 -7.8720 -0.0049 23 1 4.0129 -7.5648 -0.4883 24 6 2.7083 -9.2041 -0.0377 25 7 3.5003 -10.1080 -0.5744 26 14 1.0606 -9.7138 0.6797 27 1 0.0404 -9.7484 -0.3989 28 1 1.1821 -11.0624 1.2895 29 1 0.6494 -8.7359 1.7188 30 1 -0.3633 -0.0058 1.0278 31 1 -0.3633 -0.8871 -0.5186 32 1 -0.3634 0.8927 -0.5089 33 1 1.9867 2.1059 0.0004 34 1 5.7328 -0.9581 0.4532 35 1 4.7526 -2.4407 0.5507 36 1 6.8367 -3.0631 -0.9397 37 1 6.5695 -2.9057 -2.5909 38 1 3.1297 -2.6968 2.7565 39 1 1.6632 -1.6931 2.5398 40 1 0.2171 -3.4169 3.4225 41 1 1.6789 -3.6098 4.4475 42 1 0.7523 -5.7309 3.0099 43 1 2.5179 -5.4269 3.1083 44 1 2.7568 -5.2151 -0.4584 45 1 3.6246 -5.3673 1.0882 46 1 1.5367 -7.2334 1.1357 47 1 3.2283 -11.0388 -0.5977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569556150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:51 Heat of formation + Delta-G solvation = -11.761247 kcal Electronic energy + Delta-G solvation = -30032.306429 eV Core-core repulsion = 26023.061351 eV Total energy + Delta-G solvation = -4009.245078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.49358 -39.61837 -39.19509 -37.10050 -34.61692 -33.74750 -32.92012 -32.11333 -31.44676 -31.06100 -29.16407 -28.22505 -26.05448 -25.21618 -23.75173 -21.87885 -21.75321 -21.12307 -20.10989 -19.50525 -18.52364 -18.02104 -17.36736 -17.14890 -16.70459 -16.46717 -16.14809 -15.18098 -14.63922 -14.50856 -14.37025 -14.17155 -13.88897 -13.69411 -13.53194 -13.39601 -13.13340 -12.96276 -12.76573 -12.72735 -12.59686 -12.56110 -12.32168 -12.15167 -11.67438 -11.29178 -11.22912 -11.06870 -10.87623 -10.59752 -10.43005 -10.10218 -10.03599 -9.72601 -9.63608 -9.53609 -8.82007 -8.56276 -8.35617 -8.21417 -7.15250 -5.71472 -3.06127 1.95956 2.49690 2.56620 2.88109 3.01141 3.36724 3.39507 3.46241 3.50130 3.55667 4.34714 4.59687 4.63455 4.64738 4.72548 4.89634 4.94363 5.01326 5.08807 5.19432 5.32578 5.36065 5.40105 5.47688 5.59256 5.62926 5.67134 5.71994 5.81631 5.84831 5.92111 5.97900 6.03715 6.09781 6.13994 6.33841 6.52784 6.71087 6.71998 6.77694 6.88399 6.96727 7.21506 7.37846 7.79478 8.06254 8.19826 8.47288 8.53330 9.27660 9.99541 10.20417 11.47123 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.003890 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.232724 B = 7196.400597 C = 8481.183951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.133 4.133 3 C -0.008 4.008 4 N -0.545 5.545 5 H 0.413 0.587 6 C 0.084 3.916 7 C -0.082 4.082 8 C 0.516 3.484 9 N -0.854 5.854 10 O -0.524 6.524 11 C -0.186 4.186 12 C 0.602 3.398 13 O -0.517 6.517 14 N -0.609 5.609 15 C 0.107 3.893 16 C -0.133 4.133 17 C -0.125 4.125 18 C 0.126 3.874 19 H 0.075 0.925 20 C 0.151 3.849 21 N -0.752 5.752 22 C -0.238 4.238 23 H 0.088 0.912 24 C 0.004 3.996 25 N -0.935 5.935 26 Si 0.887 3.113 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.168 0.832 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.402 0.598 37 H 0.404 0.596 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.043 0.957 45 H 0.021 0.979 46 H 0.362 0.638 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.080 25.716 10.082 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.140 4.140 3 C -0.137 4.137 4 N -0.139 5.139 5 H 0.249 0.751 6 C -0.032 4.032 7 C -0.122 4.122 8 C 0.299 3.701 9 N -0.418 5.418 10 O -0.398 6.398 11 C -0.197 4.197 12 C 0.389 3.611 13 O -0.391 6.391 14 N -0.344 5.344 15 C -0.016 4.016 16 C -0.171 4.171 17 C -0.163 4.163 18 C 0.023 3.977 19 H 0.093 0.907 20 C 0.023 3.977 21 N -0.399 5.399 22 C -0.368 4.368 23 H 0.106 0.894 24 C -0.192 4.192 25 N -0.583 5.583 26 Si 0.718 3.282 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.185 0.815 34 H 0.124 0.876 35 H 0.134 0.866 36 H 0.230 0.770 37 H 0.235 0.765 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.038 0.962 46 H 0.195 0.805 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.686 25.867 8.801 27.375 hybrid contribution -0.313 -0.572 0.457 0.796 sum 1.373 25.295 9.258 26.971 Atomic orbital electron populations 1.20128 0.89713 1.02487 1.01490 1.20376 0.95099 0.90345 1.08142 1.21401 0.82162 0.98879 1.11262 1.41207 1.08165 1.05666 1.58892 0.75071 1.19094 0.93839 0.83186 1.07056 1.20242 0.94868 1.01222 0.95906 1.20341 0.79812 0.78763 0.91135 1.43789 1.34549 1.50821 1.12620 1.90811 1.50720 1.52221 1.46094 1.19921 0.92292 0.92422 1.15040 1.17138 0.77053 0.84652 0.82241 1.90868 1.48201 1.69645 1.30424 1.48495 1.70830 1.09449 1.05617 1.22254 0.99778 0.97612 0.81998 1.22827 1.00578 0.95207 0.98533 1.22708 1.03559 0.96665 0.93371 1.21828 0.99893 0.79900 0.96112 0.90704 1.20905 0.93968 0.84209 0.98588 1.42656 1.32655 1.01577 1.62999 1.19021 1.03054 0.87715 1.26985 0.89427 1.24675 0.98081 0.95742 1.00681 1.69710 1.36778 1.01244 1.50590 0.86496 0.85488 0.77389 0.78818 1.21148 1.21800 1.20485 0.91925 0.91711 0.91831 0.81470 0.87646 0.86571 0.76987 0.76469 0.91799 0.90700 0.90799 0.90085 0.90254 0.89781 0.93941 0.96151 0.80467 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.35 36.01 0.37 -0.50 16 2 C -0.13 -1.64 6.36 -102.53 -0.65 -2.30 16 3 C -0.01 -0.08 11.82 -16.83 -0.20 -0.28 16 4 N -0.55 -4.92 5.90 -9.11 -0.05 -4.97 16 5 H 0.41 2.31 8.96 -40.82 -0.37 1.94 16 6 C 0.08 1.00 5.67 -81.88 -0.46 0.54 16 7 C -0.08 -0.81 6.02 -29.04 -0.17 -0.99 16 8 C 0.52 6.76 8.09 -10.99 -0.09 6.68 16 9 N -0.85 -8.32 8.87 31.22 0.28 -8.04 16 10 O -0.52 -9.51 16.88 5.56 0.09 -9.41 16 11 C -0.19 -2.73 5.00 -103.35 -0.52 -3.25 16 12 C 0.60 10.68 7.03 -12.60 -0.09 10.59 16 13 O -0.52 -11.89 16.28 5.25 0.09 -11.80 16 14 N -0.61 -9.25 3.06 -164.19 -0.50 -9.75 16 15 C 0.11 1.16 6.65 -2.41 -0.02 1.14 16 16 C -0.13 -1.33 7.10 -24.46 -0.17 -1.51 16 17 C -0.13 -1.70 6.02 -24.90 -0.15 -1.85 16 18 C 0.13 2.17 2.94 -66.96 -0.20 1.97 16 19 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 20 C 0.15 3.23 5.64 -4.04 -0.02 3.20 16 21 N -0.75 -18.72 5.22 -59.91 -0.31 -19.03 16 22 C -0.24 -6.99 10.47 -15.06 -0.16 -7.14 16 23 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 24 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 25 N -0.93 -29.96 13.97 55.49 0.78 -29.18 16 26 Si 0.89 22.70 28.01 -169.99 -4.76 17.94 16 27 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.28 -6.53 6.15 56.52 0.35 -6.18 16 30 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.11 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.12 1.17 8.01 -51.93 -0.42 0.75 16 36 H 0.40 2.65 8.83 -40.82 -0.36 2.29 16 37 H 0.40 3.86 8.93 -40.82 -0.36 3.49 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.74 7.77 -51.93 -0.40 0.33 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.08 1.18 7.79 -51.92 -0.40 0.78 16 44 H 0.04 1.05 6.90 -51.93 -0.36 0.69 16 45 H 0.02 0.42 8.05 -51.93 -0.42 0.01 16 46 H 0.36 8.67 5.14 -40.82 -0.21 8.46 16 47 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 391.32 15.07 5.90 5.90 Total: -1.00 -41.61 391.32 -8.27 -49.87 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -7.14 Total: 12.18 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -2.62 Total: 6.32 kcal Atomic # 7 Polarization: -71.17 SS G_CDS: 0.18 Total: -70.99 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.18 Total: -21.21 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.76 Total: 17.94 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -41.61 -8.27 -49.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569556150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.112 kcal (2) G-P(sol) polarization free energy of solvation -41.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds