Wall clock time and date at job start Tue Mar 31 2020 18:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34487 * 126.83173 * 2 1 4 4 N 1.36441 * 108.85471 * 179.88122 * 3 2 1 5 5 H 0.97006 * 124.85374 * 180.16561 * 4 3 2 6 6 C 1.34668 * 110.30010 * 0.40398 * 4 3 2 7 7 C 1.50692 * 125.80314 * 179.73617 * 6 4 3 8 8 C 1.50700 * 109.47629 * 266.63131 * 7 6 4 9 9 N 1.34766 * 120.00307 * 185.13121 * 8 7 6 10 10 O 1.21280 * 119.99312 * 5.13046 * 8 7 6 11 11 C 1.36768 * 108.39474 * 359.75827 * 6 4 3 12 12 C 1.47261 * 126.94213 * 179.97438 * 11 6 4 13 13 O 1.21629 * 119.99697 * 265.10531 * 12 11 6 14 14 N 1.34769 * 120.00164 * 85.10399 * 12 11 6 15 15 C 1.47432 * 125.64673 * 4.52493 * 14 12 11 16 16 C 1.55128 * 104.72131 * 155.81945 * 15 14 12 17 17 C 1.55160 * 101.48593 * 37.29371 * 16 15 14 18 18 C 1.47026 * 125.65308 * 184.83604 * 14 12 11 19 19 H 1.08999 * 109.87542 * 300.43901 * 18 14 12 20 20 C 1.52998 * 109.88007 * 61.60068 * 18 14 12 21 21 N 1.46497 * 109.46848 * 183.70562 * 20 18 14 22 22 C 1.36938 * 120.00134 * 175.02747 * 21 20 18 23 23 H 1.08006 * 119.99635 * 4.99079 * 22 21 20 24 24 C 1.38808 * 120.00541 * 184.98663 * 22 21 20 25 25 N 1.31618 * 120.00279 * 184.83414 * 24 22 21 26 26 Si 1.86802 * 119.99685 * 4.84216 * 24 22 21 27 27 H 1.48500 * 109.47180 * 94.58815 * 26 24 22 28 28 H 1.48496 * 109.47154 * 214.58830 * 26 24 22 29 29 H 1.48498 * 109.46911 * 334.59050 * 26 24 22 30 30 H 1.09010 * 109.46720 * 269.67867 * 1 2 3 31 31 H 1.08996 * 109.47255 * 149.68967 * 1 2 3 32 32 H 1.08994 * 109.47732 * 29.68320 * 1 2 3 33 33 H 1.08003 * 125.56948 * 0.02562 * 3 2 1 34 34 H 1.09010 * 109.47159 * 26.63174 * 7 6 4 35 35 H 1.08997 * 109.47228 * 146.62806 * 7 6 4 36 36 H 0.97000 * 120.00296 * 359.97438 * 9 8 7 37 37 H 0.97004 * 120.00345 * 179.97438 * 9 8 7 38 38 H 1.09006 * 110.36474 * 274.74831 * 15 14 12 39 39 H 1.08998 * 110.36405 * 37.06735 * 15 14 12 40 40 H 1.09000 * 111.18907 * 279.19066 * 16 15 14 41 41 H 1.09002 * 110.90379 * 155.27583 * 16 15 14 42 42 H 1.08998 * 110.71944 * 205.96915 * 17 16 15 43 43 H 1.09008 * 110.71814 * 82.69600 * 17 16 15 44 44 H 1.08998 * 109.47217 * 303.70770 * 20 18 14 45 45 H 1.09005 * 109.47238 * 63.70438 * 20 18 14 46 46 H 0.96999 * 120.00352 * 355.02509 * 21 20 18 47 47 H 0.97003 * 120.00081 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6110 0.6553 0.0027 5 1 4.3840 1.2414 0.0055 6 6 3.6657 -0.6902 -0.0045 7 6 4.9226 -1.5215 -0.0098 8 6 5.2945 -1.8608 -1.4302 9 7 6.3303 -2.6870 -1.6766 10 8 4.6616 -1.3902 -2.3516 11 6 2.3864 -1.1741 -0.0065 12 6 1.9750 -2.5880 -0.0144 13 8 1.7182 -3.1408 -1.0670 14 7 1.8830 -3.2695 1.1446 15 6 2.0722 -2.7023 2.4923 16 6 1.2820 -3.6494 3.4331 17 6 1.5561 -5.0309 2.7821 18 6 1.5837 -4.7032 1.2744 19 1 0.6126 -4.9207 0.8299 20 6 2.6721 -5.5265 0.5827 21 7 2.3202 -6.9474 0.6404 22 6 3.0972 -7.8720 -0.0049 23 1 4.0129 -7.5648 -0.4883 24 6 2.7083 -9.2041 -0.0377 25 7 3.5003 -10.1080 -0.5744 26 14 1.0606 -9.7138 0.6797 27 1 0.0404 -9.7484 -0.3989 28 1 1.1821 -11.0624 1.2895 29 1 0.6494 -8.7359 1.7188 30 1 -0.3633 -0.0058 1.0278 31 1 -0.3633 -0.8871 -0.5186 32 1 -0.3634 0.8927 -0.5089 33 1 1.9867 2.1059 0.0004 34 1 5.7328 -0.9581 0.4532 35 1 4.7526 -2.4407 0.5507 36 1 6.8367 -3.0631 -0.9397 37 1 6.5695 -2.9057 -2.5909 38 1 3.1297 -2.6968 2.7565 39 1 1.6632 -1.6931 2.5398 40 1 0.2171 -3.4169 3.4225 41 1 1.6789 -3.6098 4.4475 42 1 0.7523 -5.7309 3.0099 43 1 2.5179 -5.4269 3.1083 44 1 2.7568 -5.2151 -0.4584 45 1 3.6246 -5.3673 1.0882 46 1 1.5367 -7.2334 1.1357 47 1 3.2283 -11.0388 -0.5977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569556150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:50 Heat of formation + Delta-G solvation = -46.429742 kcal Electronic energy + Delta-G solvation = -30033.809768 eV Core-core repulsion = 26023.061351 eV Total energy + Delta-G solvation = -4010.748417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.37601 -40.84879 -40.22656 -38.48338 -36.55515 -34.76543 -33.83764 -33.67520 -32.97931 -32.04397 -30.71464 -29.17403 -26.87201 -26.78855 -25.12614 -23.76332 -22.72154 -22.09953 -21.37372 -20.34342 -20.07927 -19.19495 -18.82906 -18.09127 -17.75038 -17.58304 -17.30423 -16.48408 -16.27249 -15.88823 -15.52242 -15.40770 -15.28000 -15.08054 -14.79838 -14.59184 -14.21704 -14.16909 -14.04889 -13.91897 -13.75055 -13.51234 -13.42919 -13.18708 -13.05538 -12.99558 -12.81950 -12.19481 -12.10676 -12.06768 -11.89259 -11.77387 -11.58209 -11.20804 -11.08879 -10.95050 -10.70657 -9.66197 -9.45949 -9.35135 -9.03378 -8.06276 -5.41077 1.06588 1.33138 1.41597 1.46845 1.56089 1.57402 1.67787 2.01540 2.43961 2.45793 2.71460 3.24650 3.50567 3.56226 3.62597 3.77266 3.97764 3.99053 4.08583 4.16030 4.25949 4.29269 4.31136 4.36399 4.51912 4.54038 4.66458 4.76950 4.86864 4.88223 4.94238 5.00393 5.03531 5.11961 5.15129 5.15606 5.29657 5.37601 5.47455 5.70207 5.81638 5.84749 6.03918 6.16559 6.38709 6.58545 6.73981 7.02831 7.23376 7.28315 7.75915 7.99985 9.15258 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.003890 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.232724 B = 7196.400597 C = 8481.183951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.166 4.166 3 C 0.015 3.985 4 N -0.528 5.528 5 H 0.433 0.567 6 C 0.084 3.916 7 C -0.078 4.078 8 C 0.507 3.493 9 N -0.841 5.841 10 O -0.584 6.584 11 C -0.226 4.226 12 C 0.600 3.400 13 O -0.590 6.590 14 N -0.603 5.603 15 C 0.102 3.898 16 C -0.117 4.117 17 C -0.121 4.121 18 C 0.128 3.872 19 H 0.050 0.950 20 C 0.159 3.841 21 N -0.750 5.750 22 C -0.239 4.239 23 H 0.049 0.951 24 C -0.059 4.059 25 N -0.981 5.981 26 Si 0.958 3.042 27 H -0.289 1.289 28 H -0.286 1.286 29 H -0.242 1.242 30 H 0.079 0.921 31 H 0.026 0.974 32 H 0.083 0.917 33 H 0.210 0.790 34 H 0.158 0.842 35 H 0.114 0.886 36 H 0.418 0.582 37 H 0.404 0.596 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.116 0.884 42 H 0.084 0.916 43 H 0.083 0.917 44 H -0.002 1.002 45 H 0.031 0.969 46 H 0.370 0.630 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.703 28.490 13.913 31.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.172 4.172 3 C -0.115 4.115 4 N -0.124 5.124 5 H 0.272 0.728 6 C -0.034 4.034 7 C -0.118 4.118 8 C 0.292 3.708 9 N -0.404 5.404 10 O -0.464 6.464 11 C -0.237 4.237 12 C 0.390 3.610 13 O -0.470 6.470 14 N -0.336 5.336 15 C -0.019 4.019 16 C -0.155 4.155 17 C -0.159 4.159 18 C 0.024 3.976 19 H 0.069 0.931 20 C 0.032 3.968 21 N -0.397 5.397 22 C -0.370 4.370 23 H 0.067 0.933 24 C -0.251 4.251 25 N -0.631 5.631 26 Si 0.784 3.216 27 H -0.215 1.215 28 H -0.212 1.212 29 H -0.166 1.166 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.102 0.898 33 H 0.226 0.774 34 H 0.176 0.824 35 H 0.132 0.868 36 H 0.250 0.750 37 H 0.235 0.765 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.135 0.865 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.017 0.983 45 H 0.049 0.951 46 H 0.204 0.796 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.365 28.690 12.738 31.421 hybrid contribution -0.063 -1.400 -0.820 1.624 sum 1.302 27.290 11.918 29.807 Atomic orbital electron populations 1.20099 0.89335 1.01617 1.02277 1.20651 0.95841 0.90455 1.10239 1.21963 0.81582 0.99854 1.08066 1.41225 1.09049 1.04845 1.57258 0.72754 1.19215 0.93446 0.84506 1.06187 1.20335 0.95948 1.01721 0.93801 1.20990 0.79488 0.78314 0.92022 1.43750 1.33696 1.49575 1.13428 1.90781 1.52781 1.54749 1.48039 1.19890 0.94376 0.91080 1.18326 1.17758 0.75664 0.85920 0.81697 1.90817 1.51606 1.71442 1.33153 1.48577 1.69434 1.08497 1.07050 1.22601 1.01481 0.98485 0.79379 1.22844 1.01223 0.91810 0.99584 1.22684 1.03790 0.99168 0.90280 1.21670 0.96745 0.80810 0.98373 0.93135 1.20875 0.96199 0.83006 0.96769 1.42551 1.32266 1.02336 1.62507 1.18949 1.02347 0.88888 1.26804 0.93322 1.25539 1.02395 0.95540 1.01635 1.69889 1.39130 1.01685 1.52402 0.85364 0.79635 0.77837 0.78740 1.21542 1.21185 1.16650 0.90265 0.95445 0.89778 0.77354 0.82448 0.86822 0.75045 0.76476 0.89771 0.89032 0.90019 0.86542 0.89748 0.89884 0.98347 0.95115 0.79567 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 10.35 71.24 0.74 -0.86 16 2 C -0.17 -3.89 6.36 -18.51 -0.12 -4.00 16 3 C 0.01 0.23 11.82 83.12 0.98 1.21 16 4 N -0.53 -7.89 5.90 -182.73 -1.08 -8.97 16 5 H 0.43 3.11 8.96 -92.70 -0.83 2.28 16 6 C 0.08 1.88 5.67 41.78 0.24 2.11 16 7 C -0.08 -1.42 6.02 29.10 0.18 -1.25 16 8 C 0.51 13.43 8.09 87.66 0.71 14.14 16 9 N -0.84 -16.55 8.87 -173.55 -1.54 -18.09 16 10 O -0.58 -22.10 16.88 -3.03 -0.05 -22.15 16 11 C -0.23 -6.60 5.00 -19.04 -0.10 -6.70 16 12 C 0.60 22.27 7.03 86.62 0.61 22.88 16 13 O -0.59 -29.56 16.28 -4.12 -0.07 -29.62 16 14 N -0.60 -18.33 3.06 -791.63 -2.43 -20.75 16 15 C 0.10 1.92 6.65 86.93 0.58 2.49 16 16 C -0.12 -1.87 7.10 32.06 0.23 -1.65 16 17 C -0.12 -3.01 6.02 31.78 0.19 -2.82 16 18 C 0.13 4.45 2.94 45.34 0.13 4.59 16 19 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 20 C 0.16 7.05 5.64 86.38 0.49 7.54 16 21 N -0.75 -38.00 5.22 -343.46 -1.79 -39.80 16 22 C -0.24 -14.57 10.47 84.03 0.88 -13.69 16 23 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 24 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 25 N -0.98 -64.72 13.97 21.65 0.30 -64.41 16 26 Si 0.96 46.91 28.01 68.60 1.92 48.83 16 27 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 28 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 29 H -0.24 -10.31 6.15 99.48 0.61 -9.70 16 30 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.16 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.11 2.16 8.01 -2.39 -0.02 2.14 16 36 H 0.42 5.25 8.83 -92.71 -0.82 4.43 16 37 H 0.40 8.06 8.93 -92.71 -0.83 7.23 16 38 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.09 1.49 7.77 -2.39 -0.02 1.47 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.08 2.11 7.79 -2.38 -0.02 2.09 16 44 H 0.00 -0.09 6.90 -2.39 -0.02 -0.10 16 45 H 0.03 1.30 8.05 -2.38 -0.02 1.28 16 46 H 0.37 17.44 5.14 -92.71 -0.48 16.96 16 47 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 Total: -1.00 -100.00 391.32 -0.54 -100.55 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: -2.01 Total: 33.61 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 6.20 Total: 20.82 kcal Atomic # 7 Polarization: -145.49 SS G_CDS: -6.53 Total: -152.02 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -0.12 Total: -51.78 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.92 Total: 48.83 kcal Total: -100.00 -0.54 -100.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569556150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.117 kcal (2) G-P(sol) polarization free energy of solvation -100.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds