Wall clock time and date at job start Tue Mar 31 2020 18:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34497 * 126.82861 * 2 1 4 4 N 1.36450 * 108.84794 * 180.26694 * 3 2 1 5 5 H 0.97006 * 124.84128 * 179.69187 * 4 3 2 6 6 C 1.34651 * 110.30303 * 359.70700 * 4 3 2 7 7 C 1.50704 * 125.80453 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.47289 * 264.98288 * 7 6 4 9 9 N 1.34776 * 120.00211 * 179.97438 * 8 7 6 10 10 O 1.21285 * 119.99698 * 359.97438 * 8 7 6 11 11 C 1.36771 * 108.39752 * 0.02562 * 6 4 3 12 12 C 1.47264 * 126.94314 * 180.02562 * 11 6 4 13 13 O 1.21620 * 120.00089 * 89.99778 * 12 11 6 14 14 N 1.34776 * 119.99656 * 269.99508 * 12 11 6 15 15 C 1.47419 * 125.65183 * 4.73170 * 14 12 11 16 16 C 1.54909 * 104.83366 * 204.14874 * 15 14 12 17 17 C 1.55160 * 101.57962 * 322.98323 * 16 15 14 18 18 C 1.47020 * 125.64620 * 184.74883 * 14 12 11 19 19 H 1.08998 * 110.01416 * 59.43374 * 18 14 12 20 20 C 1.53003 * 109.88298 * 298.33797 * 18 14 12 21 21 N 1.46504 * 109.47047 * 178.10083 * 20 18 14 22 22 C 1.36934 * 120.00017 * 174.93445 * 21 20 18 23 23 H 1.08008 * 119.99890 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00374 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99708 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00332 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47038 * 180.02562 * 26 24 22 28 28 H 1.48504 * 109.46766 * 299.99672 * 26 24 22 29 29 H 1.48495 * 109.47369 * 59.99411 * 26 24 22 30 30 H 1.08999 * 109.47268 * 270.20348 * 1 2 3 31 31 H 1.09005 * 109.47600 * 30.20598 * 1 2 3 32 32 H 1.09003 * 109.46953 * 150.20167 * 1 2 3 33 33 H 1.07994 * 125.57534 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.46627 * 24.97604 * 7 6 4 35 35 H 1.08993 * 109.47112 * 144.97423 * 7 6 4 36 36 H 0.97002 * 119.99357 * 359.97438 * 9 8 7 37 37 H 0.96998 * 120.00445 * 179.97438 * 9 8 7 38 38 H 1.08998 * 110.37339 * 85.30742 * 15 14 12 39 39 H 1.09005 * 110.45750 * 323.03409 * 15 14 12 40 40 H 1.09006 * 111.00254 * 204.91534 * 16 15 14 41 41 H 1.08994 * 111.04284 * 81.07492 * 16 15 14 42 42 H 1.08994 * 110.72173 * 277.14098 * 17 16 15 43 43 H 1.08997 * 110.86877 * 153.93691 * 17 16 15 44 44 H 1.08997 * 109.46920 * 58.10340 * 20 18 14 45 45 H 1.08996 * 109.47610 * 298.10143 * 20 18 14 46 46 H 0.96997 * 120.00136 * 354.92572 * 21 20 18 47 47 H 0.97001 * 119.99839 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0766 0.0000 4 7 3.6110 0.6553 -0.0060 5 1 4.3839 1.2416 -0.0115 6 6 3.6656 -0.6901 -0.0035 7 6 4.9225 -1.5214 -0.0079 8 6 5.2661 -1.9051 -1.4242 9 7 6.3585 -2.6542 -1.6733 10 8 4.5596 -1.5398 -2.3398 11 6 2.3864 -1.1740 0.0037 12 6 1.9750 -2.5880 0.0091 13 8 1.8101 -3.1693 1.0646 14 7 1.7811 -3.2378 -1.1556 15 6 2.0384 -2.6884 -2.4992 16 6 1.1206 -3.5041 -3.4436 17 6 1.1960 -4.9172 -2.8072 18 6 1.2777 -4.6119 -1.2966 19 1 0.2880 -4.6945 -0.8477 20 6 2.2394 -5.5905 -0.6194 21 7 1.7068 -6.9511 -0.7258 22 6 2.4479 -8.0132 -0.2813 23 1 3.4254 -7.8479 0.1474 24 6 1.9436 -9.3025 -0.3825 25 7 0.7526 -9.5040 -0.9054 26 14 2.9544 -10.7513 0.2245 27 1 2.1976 -12.0098 0.0042 28 1 4.2365 -10.8080 -0.5227 29 1 3.2330 -10.5879 1.6739 30 1 -0.3634 0.0036 1.0276 31 1 -0.3634 0.8881 -0.5170 32 1 -0.3633 -0.8918 -0.5107 33 1 1.9867 2.1060 -0.0004 34 1 5.7416 -0.9439 0.4209 35 1 4.7642 -2.4225 0.5845 36 1 6.9238 -2.9459 -0.9410 37 1 6.5795 -2.9015 -2.5849 38 1 3.0843 -2.8284 -2.7725 39 1 1.7760 -1.6311 -2.5351 40 1 1.5142 -3.5120 -4.4601 41 1 0.1004 -3.1211 -3.4249 42 1 2.0889 -5.4443 -3.1430 43 1 0.3002 -5.4944 -3.0360 44 1 2.3481 -5.3240 0.4319 45 1 3.2120 -5.5417 -1.1090 46 1 0.8290 -7.0996 -1.1110 47 1 0.2275 -8.7516 -1.2203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569556151.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:55 Heat of formation + Delta-G solvation = -14.257674 kcal Electronic energy + Delta-G solvation = -30303.016124 eV Core-core repulsion = 26293.662792 eV Total energy + Delta-G solvation = -4009.353331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51781 -39.48418 -39.36543 -37.01151 -34.65129 -33.91093 -32.94893 -32.07615 -31.26957 -30.97710 -28.63283 -28.02974 -26.06700 -24.76049 -23.63191 -22.30061 -21.58175 -21.23815 -20.05897 -19.51645 -18.30792 -18.07098 -17.20504 -17.12910 -16.83778 -16.32491 -16.19692 -15.22661 -14.75005 -14.57052 -14.23161 -14.01057 -13.78110 -13.63230 -13.49525 -13.43913 -13.23806 -13.07390 -12.84042 -12.79259 -12.65993 -12.27483 -12.15759 -11.85784 -11.51907 -11.25756 -10.90675 -10.71836 -10.52245 -10.43138 -10.32082 -10.25074 -9.93413 -9.82563 -9.56836 -9.11227 -8.75176 -8.56057 -8.22251 -8.17696 -6.87255 -6.00345 -2.98280 1.94846 2.38289 2.50615 2.90676 3.02628 3.33285 3.55455 3.58039 3.61568 3.78623 4.31672 4.62947 4.76166 4.77465 4.80436 4.88550 4.95470 5.14861 5.22134 5.23185 5.32092 5.46515 5.61812 5.68222 5.71633 5.73005 5.84968 5.89023 5.97066 6.00315 6.04680 6.13254 6.16326 6.27764 6.29297 6.49612 6.58216 6.65539 6.73580 6.87007 6.88686 7.05102 7.10037 7.35805 7.89424 7.93759 8.02820 8.57665 8.85845 9.34470 10.20519 10.36718 11.48612 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013835 B = 0.003547 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.382217 B = 7892.803779 C = 8469.298707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.132 4.132 3 C -0.009 4.009 4 N -0.546 5.546 5 H 0.413 0.587 6 C 0.082 3.918 7 C -0.083 4.083 8 C 0.516 3.484 9 N -0.854 5.854 10 O -0.522 6.522 11 C -0.183 4.183 12 C 0.601 3.399 13 O -0.533 6.533 14 N -0.600 5.600 15 C 0.108 3.892 16 C -0.137 4.137 17 C -0.119 4.119 18 C 0.129 3.871 19 H 0.071 0.929 20 C 0.154 3.846 21 N -0.740 5.740 22 C -0.323 4.323 23 H 0.062 0.938 24 C -0.047 4.047 25 N -0.946 5.946 26 Si 1.080 2.920 27 H -0.285 1.285 28 H -0.297 1.297 29 H -0.296 1.296 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.168 0.832 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.402 0.598 37 H 0.404 0.596 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.035 0.965 45 H 0.018 0.982 46 H 0.366 0.634 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.178 25.167 -2.895 26.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C -0.138 4.138 4 N -0.141 5.141 5 H 0.249 0.751 6 C -0.034 4.034 7 C -0.124 4.124 8 C 0.300 3.700 9 N -0.418 5.418 10 O -0.397 6.397 11 C -0.194 4.194 12 C 0.388 3.612 13 O -0.410 6.410 14 N -0.334 5.334 15 C -0.015 4.015 16 C -0.175 4.175 17 C -0.157 4.157 18 C 0.025 3.975 19 H 0.090 0.910 20 C 0.026 3.974 21 N -0.386 5.386 22 C -0.455 4.455 23 H 0.080 0.920 24 C -0.245 4.245 25 N -0.592 5.592 26 Si 0.912 3.088 27 H -0.211 1.211 28 H -0.224 1.224 29 H -0.223 1.223 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.185 0.815 34 H 0.122 0.878 35 H 0.137 0.863 36 H 0.230 0.770 37 H 0.235 0.765 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.053 0.947 45 H 0.035 0.965 46 H 0.199 0.801 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.867 23.700 -2.435 25.422 hybrid contribution 0.601 1.702 -0.266 1.825 sum 9.468 25.402 -2.701 27.244 Atomic orbital electron populations 1.20123 0.89690 1.02071 1.01889 1.20391 0.95136 0.90358 1.08005 1.21394 0.82140 0.98860 1.11388 1.41192 1.08144 1.05619 1.59104 0.75129 1.19044 0.93851 0.83130 1.07348 1.20241 0.94987 1.01358 0.95811 1.20393 0.80433 0.78094 0.91074 1.43810 1.28747 1.56170 1.13078 1.90727 1.49043 1.53654 1.46308 1.19942 0.92291 0.92548 1.14600 1.17117 0.76932 0.84743 0.82381 1.90827 1.51398 1.68227 1.30501 1.48455 1.64679 1.14307 1.05911 1.22423 1.00238 0.97713 0.81092 1.22824 0.99925 0.95920 0.98815 1.22628 1.03576 0.96243 0.93273 1.21799 0.98191 0.81209 0.96252 0.91044 1.20885 0.93980 0.84544 0.98029 1.42224 1.19824 1.00913 1.75615 1.20004 1.00410 0.87937 1.37115 0.92009 1.25739 0.99193 0.98432 1.01090 1.70872 1.11298 1.33025 1.44045 0.83236 0.74196 0.75953 0.75459 1.21058 1.22429 1.22333 0.91673 0.91858 0.91960 0.81473 0.87781 0.86277 0.76977 0.76522 0.89946 0.90953 0.90351 0.91180 0.90188 0.90276 0.94747 0.96453 0.80110 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.35 36.00 0.37 -0.53 16 2 C -0.13 -1.67 6.36 -102.54 -0.65 -2.33 16 3 C -0.01 -0.09 11.82 -16.82 -0.20 -0.29 16 4 N -0.55 -4.84 5.90 -9.10 -0.05 -4.89 16 5 H 0.41 2.19 8.96 -40.82 -0.37 1.82 16 6 C 0.08 0.97 5.67 -81.88 -0.46 0.50 16 7 C -0.08 -0.79 6.01 -29.03 -0.17 -0.96 16 8 C 0.52 5.39 8.09 -10.99 -0.09 5.30 16 9 N -0.85 -6.17 8.87 31.22 0.28 -5.89 16 10 O -0.52 -7.07 13.43 5.55 0.07 -7.00 16 11 C -0.18 -2.74 4.90 -103.35 -0.51 -3.25 16 12 C 0.60 11.07 7.15 -12.59 -0.09 10.98 16 13 O -0.53 -11.98 15.94 5.26 0.08 -11.90 16 14 N -0.60 -10.44 3.06 -164.33 -0.50 -10.95 16 15 C 0.11 1.61 5.88 -2.53 -0.01 1.60 16 16 C -0.14 -1.86 7.09 -24.58 -0.17 -2.03 16 17 C -0.12 -1.99 6.08 -24.89 -0.15 -2.14 16 18 C 0.13 2.50 2.98 -66.95 -0.20 2.30 16 19 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 20 C 0.15 3.60 5.62 -4.04 -0.02 3.58 16 21 N -0.74 -20.09 5.37 -59.91 -0.32 -20.41 16 22 C -0.32 -9.67 9.99 -15.06 -0.15 -9.82 16 23 H 0.06 1.83 7.83 -52.48 -0.41 1.42 16 24 C -0.05 -1.43 5.50 -17.43 -0.10 -1.53 16 25 N -0.95 -30.22 13.70 55.49 0.76 -29.46 16 26 Si 1.08 26.87 29.92 -169.99 -5.09 21.78 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 28 H -0.30 -6.99 7.11 56.52 0.40 -6.58 16 29 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.12 1.28 8.05 -51.93 -0.42 0.86 16 36 H 0.40 1.84 8.83 -40.82 -0.36 1.48 16 37 H 0.40 2.71 8.93 -40.82 -0.36 2.35 16 38 H 0.08 1.30 5.54 -51.93 -0.29 1.01 16 39 H 0.07 1.06 7.62 -51.93 -0.40 0.67 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.44 7.82 -51.93 -0.41 1.04 16 43 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.03 0.90 6.64 -51.93 -0.34 0.56 16 45 H 0.02 0.41 8.09 -51.93 -0.42 -0.01 16 46 H 0.37 10.00 6.35 -40.82 -0.26 9.74 16 47 H 0.25 8.00 6.77 -40.82 -0.28 7.73 16 LS Contribution 385.61 15.07 5.81 5.81 Total: -1.00 -39.95 385.61 -8.48 -48.43 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -6.91 Total: 13.09 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -2.61 Total: 1.37 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: 0.16 Total: -71.60 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.16 Total: -18.90 kcal Atomic # 14 Polarization: 26.87 SS G_CDS: -5.09 Total: 21.78 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -39.95 -8.48 -48.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569556151.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.173 kcal (2) G-P(sol) polarization free energy of solvation -39.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds