Wall clock time and date at job start Tue Mar 31 2020 17:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32164 * 119.14462 * 2 1 4 4 C 1.32363 * 120.60934 * 180.25462 * 3 2 1 5 5 C 1.47503 * 120.51152 * 179.71663 * 4 3 2 6 6 O 1.21605 * 119.99961 * 180.02562 * 5 4 3 7 7 N 1.34773 * 120.00173 * 0.02562 * 5 4 3 8 8 C 1.47019 * 125.64800 * 359.69165 * 7 5 4 9 9 C 1.54310 * 107.27704 * 180.97321 * 8 7 5 10 10 C 1.55153 * 102.86633 * 22.52186 * 9 8 7 11 11 H 1.09000 * 111.00200 * 82.38055 * 10 9 8 12 12 C 1.52997 * 111.04162 * 206.21905 * 10 9 8 13 13 N 1.46502 * 109.47195 * 178.66906 * 12 10 9 14 14 C 1.46502 * 119.99923 * 90.00318 * 13 12 10 15 15 C 1.36939 * 120.00006 * 269.99927 * 13 12 10 16 16 H 1.07998 * 119.99797 * 22.73775 * 15 13 12 17 17 C 1.38817 * 119.99851 * 202.74612 * 15 13 12 18 18 N 1.31615 * 119.99837 * 13.36627 * 17 15 13 19 19 Si 1.86799 * 119.99413 * 193.36974 * 17 15 13 20 20 H 1.48495 * 109.47079 * 59.99896 * 19 17 15 21 21 H 1.48507 * 109.46529 * 179.97438 * 19 17 15 22 22 H 1.48489 * 109.47379 * 299.99497 * 19 17 15 23 23 C 1.47423 * 125.65040 * 180.02562 * 7 5 4 24 24 C 1.46677 * 118.97783 * 359.73697 * 4 3 2 25 25 O 1.21860 * 120.78258 * 179.97438 * 24 4 3 26 26 N 1.35151 * 118.43268 * 359.97438 * 24 4 3 27 27 H 0.97003 * 120.36878 * 179.97438 * 26 24 4 28 28 C 1.34895 * 119.26465 * 0.02562 * 26 24 4 29 29 C 1.50697 * 119.50085 * 179.97438 * 28 26 24 30 30 H 1.08999 * 109.46899 * 270.26604 * 1 2 3 31 31 H 1.08991 * 109.46784 * 30.26739 * 1 2 3 32 32 H 1.08997 * 109.47024 * 150.27182 * 1 2 3 33 33 H 1.09004 * 109.87940 * 300.51533 * 8 7 5 34 34 H 1.09001 * 109.88359 * 61.68009 * 8 7 5 35 35 H 1.09009 * 110.92247 * 264.10783 * 9 8 7 36 36 H 1.08998 * 110.74887 * 140.86026 * 9 8 7 37 37 H 1.09005 * 109.46861 * 298.67281 * 12 10 9 38 38 H 1.09001 * 109.47134 * 58.66522 * 12 10 9 39 39 H 1.09000 * 109.47225 * 95.12859 * 14 13 12 40 40 H 1.08993 * 109.46864 * 215.12958 * 14 13 12 41 41 H 1.09001 * 109.46713 * 335.12518 * 14 13 12 42 42 H 0.97004 * 119.99485 * 180.02562 * 18 17 15 43 43 H 1.09000 * 110.36984 * 274.67359 * 23 7 5 44 44 H 1.09009 * 110.36486 * 36.88530 * 23 7 5 45 45 H 1.09000 * 109.47078 * 359.97438 * 29 28 26 46 46 H 1.09000 * 109.47238 * 239.99509 * 29 28 26 47 47 H 1.09004 * 109.46625 * 119.99779 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1543 0.0000 4 6 3.4739 1.1882 -0.0051 5 6 4.1900 2.4777 -0.0113 6 8 5.4059 2.4979 -0.0164 7 7 3.4968 3.6335 -0.0114 8 6 2.0316 3.7538 -0.0121 9 6 1.6954 5.2597 -0.0370 10 6 2.9833 5.8914 -0.6282 11 1 2.9854 5.8283 -1.7163 12 6 3.1466 7.3406 -0.1656 13 7 4.3867 7.8924 -0.7168 14 6 4.3740 8.5668 -2.0173 15 6 5.5578 7.7779 -0.0163 16 1 5.6696 7.0009 0.7253 17 6 6.6012 8.6607 -0.2595 18 7 6.3873 9.7559 -0.9573 19 14 8.3086 8.2939 0.4036 20 1 8.7907 7.0057 -0.1559 21 1 9.2374 9.3832 0.0086 22 1 8.2550 8.2012 1.8846 23 6 4.0822 4.9865 -0.0179 24 6 4.2170 -0.0764 -0.0048 25 8 5.4356 -0.0836 -0.0098 26 7 3.5185 -1.2334 0.0012 27 1 3.9814 -2.0858 0.0011 28 6 2.1702 -1.1896 0.0061 29 6 1.3860 -2.4764 0.0122 30 1 -0.3633 0.0048 1.0277 31 1 -0.3632 0.8875 -0.5179 32 1 -0.3633 -0.8924 -0.5096 33 1 1.6200 3.2656 -0.8955 34 1 1.6219 3.2994 0.8900 35 1 1.5096 5.6337 0.9699 36 1 0.8392 5.4536 -0.6829 37 1 2.2994 7.9310 -0.5147 38 1 3.1872 7.3721 0.9232 39 1 4.2706 9.6416 -1.8682 40 1 5.3066 8.3609 -2.5424 41 1 3.5352 8.1996 -2.6087 42 1 7.1165 10.3726 -1.1275 43 1 4.3139 5.3044 0.9987 44 1 4.9803 5.0083 -0.6354 45 1 2.0744 -3.3214 0.0112 46 1 0.7547 -2.5214 -0.8753 47 1 0.7615 -2.5170 0.9047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664817485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:25 Heat of formation + Delta-G solvation = 6.158832 kcal Electronic energy + Delta-G solvation = -29375.813731 eV Core-core repulsion = 25367.345726 eV Total energy + Delta-G solvation = -4008.468005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.02382 -39.55278 -38.25181 -37.26326 -35.73590 -35.17362 -33.48921 -32.07619 -30.52312 -29.57925 -28.62227 -27.23795 -25.74014 -25.55922 -24.99430 -23.52375 -22.48353 -21.07288 -20.00517 -19.44114 -18.90975 -18.24166 -16.86262 -16.72872 -16.53887 -15.93128 -15.48960 -15.21381 -14.72154 -14.47905 -14.42857 -14.14786 -13.69496 -13.54323 -13.52736 -13.42325 -13.24036 -12.90136 -12.78421 -12.48137 -12.27237 -12.17552 -12.07967 -11.79744 -11.58289 -11.32489 -11.17128 -11.02599 -10.67277 -10.54506 -10.31219 -10.24883 -10.13558 -9.97564 -9.80825 -9.64415 -9.38122 -8.41873 -8.39134 -8.13818 -6.62929 -5.60977 -3.07204 -0.13421 1.38487 2.07820 2.65669 3.14667 3.51508 3.55279 3.59917 3.60722 3.61535 3.88916 3.92092 4.24250 4.61097 4.65336 4.68657 4.84452 4.99703 5.04641 5.12529 5.17894 5.23564 5.30230 5.44088 5.55928 5.67159 5.71653 5.86264 5.91487 5.98343 6.05057 6.11098 6.12818 6.33472 6.33992 6.52295 6.62163 6.68727 6.81297 6.85396 7.01998 7.22156 7.47836 7.49535 7.82115 7.83111 7.93464 8.44203 8.51201 9.35461 9.99091 10.47287 11.43672 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.002983 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.626119 B = 9384.594486 C =10685.087705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.033 4.033 3 N -0.348 5.348 4 C 0.020 3.980 5 C 0.585 3.415 6 O -0.508 6.508 7 N -0.600 5.600 8 C 0.119 3.881 9 C -0.133 4.133 10 C -0.117 4.117 11 H 0.075 0.925 12 C 0.163 3.837 13 N -0.602 5.602 14 C 0.163 3.837 15 C -0.252 4.252 16 H 0.070 0.930 17 C 0.003 3.997 18 N -0.909 5.909 19 Si 0.899 3.101 20 H -0.282 1.282 21 H -0.292 1.292 22 H -0.283 1.283 23 C 0.125 3.875 24 C 0.495 3.505 25 O -0.480 6.480 26 N -0.588 5.588 27 H 0.420 0.580 28 C 0.149 3.851 29 C -0.126 4.126 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.050 0.950 39 H 0.030 0.970 40 H 0.039 0.961 41 H -0.004 1.004 42 H 0.251 0.749 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.320 -25.130 1.372 31.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.159 4.159 3 N -0.065 5.065 4 C -0.149 4.149 5 C 0.370 3.630 6 O -0.381 6.381 7 N -0.334 5.334 8 C -0.004 4.004 9 C -0.172 4.172 10 C -0.139 4.139 11 H 0.093 0.907 12 C 0.034 3.966 13 N -0.324 5.324 14 C 0.018 3.982 15 C -0.382 4.382 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.554 5.554 19 Si 0.729 3.271 20 H -0.208 1.208 21 H -0.218 1.218 22 H -0.209 1.209 23 C 0.004 3.996 24 C 0.287 3.713 25 O -0.350 6.350 26 N -0.224 5.224 27 H 0.260 0.740 28 C 0.033 3.967 29 C -0.184 4.184 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.015 0.985 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.119 0.881 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.234 -24.224 1.315 30.348 hybrid contribution 1.559 -1.435 0.289 2.139 sum -16.675 -25.659 1.605 30.643 Atomic orbital electron populations 1.20518 0.86927 1.03693 1.03030 1.20194 0.97955 0.85716 1.12064 1.67817 1.08411 1.28848 1.01461 1.23973 0.88827 0.93885 1.08231 1.16658 0.86083 0.81238 0.78984 1.90929 1.12062 1.85879 1.49263 1.48457 1.08009 1.05864 1.71079 1.22032 0.80056 0.96489 1.01845 1.22761 0.98625 0.93858 1.01911 1.23181 0.92272 0.98263 1.00213 0.90695 1.20658 0.89325 0.89541 0.97038 1.43897 1.03751 1.66312 1.18484 1.20779 0.96523 0.95934 0.84954 1.19164 0.90680 1.09876 1.18462 0.91263 1.24982 0.99011 0.95329 1.00224 1.70064 1.30820 1.10621 1.43904 0.86412 0.84547 0.77383 0.78766 1.20835 1.21761 1.20928 1.22380 0.97687 0.77861 1.01651 1.19097 0.88460 0.83946 0.79818 1.91080 1.11421 1.85197 1.47344 1.43777 1.06355 1.11945 1.60276 0.73962 1.21533 0.83537 0.98955 0.92661 1.21193 1.00468 0.91456 1.05274 0.90755 0.90104 0.90847 0.91316 0.91417 0.90773 0.90591 0.94036 0.93211 0.95160 0.94181 0.98509 0.93854 0.91190 0.89564 0.90399 0.88097 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 9.66 36.01 0.35 -0.01 16 2 C -0.03 -0.26 6.70 -83.18 -0.56 -0.82 16 3 N -0.35 -4.09 6.93 -4.84 -0.03 -4.12 16 4 C 0.02 0.30 6.92 -80.46 -0.56 -0.26 16 5 C 0.59 11.25 7.83 -12.49 -0.10 11.15 16 6 O -0.51 -12.05 15.76 -15.20 -0.24 -12.29 16 7 N -0.60 -10.49 3.33 -171.77 -0.57 -11.07 16 8 C 0.12 1.58 5.40 -3.07 -0.02 1.57 16 9 C -0.13 -1.72 6.42 -24.91 -0.16 -1.88 16 10 C -0.12 -2.02 3.29 -88.49 -0.29 -2.31 16 11 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 12 C 0.16 3.24 5.19 -4.04 -0.02 3.22 16 13 N -0.60 -15.18 2.87 -181.12 -0.52 -15.70 16 14 C 0.16 4.08 8.98 59.85 0.54 4.61 16 15 C -0.25 -7.04 8.98 -15.06 -0.14 -7.18 16 16 H 0.07 1.91 6.73 -52.49 -0.35 1.55 16 17 C 0.00 0.08 5.09 -17.43 -0.09 -0.01 16 18 N -0.91 -27.26 10.71 55.49 0.59 -26.66 16 19 Si 0.90 23.18 29.57 -169.99 -5.03 18.15 16 20 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 22 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 23 C 0.12 2.44 5.07 -2.54 -0.01 2.43 16 24 C 0.50 7.18 7.93 -12.68 -0.10 7.08 16 25 O -0.48 -9.08 16.40 -15.43 -0.25 -9.34 16 26 N -0.59 -4.93 5.29 -9.45 -0.05 -4.98 16 27 H 0.42 2.26 8.64 -40.82 -0.35 1.91 16 28 C 0.15 0.89 6.78 -81.98 -0.56 0.34 16 29 C -0.13 -0.14 8.83 36.00 0.32 0.18 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.12 6.42 -51.93 -0.33 -0.21 16 33 H 0.07 0.86 7.45 -51.93 -0.39 0.47 16 34 H 0.07 0.83 7.55 -51.93 -0.39 0.44 16 35 H 0.07 0.91 8.04 -51.92 -0.42 0.49 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 38 H 0.05 1.00 8.00 -51.93 -0.42 0.58 16 39 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 40 H 0.04 1.09 7.33 -51.93 -0.38 0.70 16 41 H 0.00 -0.08 8.03 -51.93 -0.42 -0.50 16 42 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.07 1.43 7.44 -51.93 -0.39 1.04 16 44 H 0.09 1.99 8.03 -51.92 -0.42 1.57 16 45 H 0.08 -0.01 7.90 -51.93 -0.41 -0.42 16 46 H 0.10 -0.01 7.35 -51.93 -0.38 -0.39 16 47 H 0.10 -0.01 8.09 -51.93 -0.42 -0.43 16 LS Contribution 378.56 15.07 5.70 5.70 Total: -1.00 -38.44 378.56 -8.88 -47.31 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -7.09 Total: -5.11 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: -1.39 Total: 18.10 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -0.58 Total: -62.54 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.49 Total: -21.63 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.03 Total: 18.15 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.44 -8.88 -47.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664817485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.471 kcal (2) G-P(sol) polarization free energy of solvation -38.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds