Wall clock time and date at job start Tue Mar 31 2020 17:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32164 * 119.14462 * 2 1 4 4 C 1.32363 * 120.60934 * 180.25462 * 3 2 1 5 5 C 1.47503 * 120.51152 * 179.71663 * 4 3 2 6 6 O 1.21605 * 119.99961 * 180.02562 * 5 4 3 7 7 N 1.34773 * 120.00173 * 0.02562 * 5 4 3 8 8 C 1.47019 * 125.64800 * 359.69165 * 7 5 4 9 9 C 1.54310 * 107.27704 * 180.97321 * 8 7 5 10 10 C 1.55153 * 102.86633 * 22.52186 * 9 8 7 11 11 H 1.09000 * 111.00200 * 82.38055 * 10 9 8 12 12 C 1.52997 * 111.04162 * 206.21905 * 10 9 8 13 13 N 1.46502 * 109.47195 * 178.66906 * 12 10 9 14 14 C 1.46502 * 119.99923 * 90.00318 * 13 12 10 15 15 C 1.36939 * 120.00006 * 269.99927 * 13 12 10 16 16 H 1.07998 * 119.99797 * 22.73775 * 15 13 12 17 17 C 1.38817 * 119.99851 * 202.74612 * 15 13 12 18 18 N 1.31615 * 119.99837 * 13.36627 * 17 15 13 19 19 Si 1.86799 * 119.99413 * 193.36974 * 17 15 13 20 20 H 1.48495 * 109.47079 * 59.99896 * 19 17 15 21 21 H 1.48507 * 109.46529 * 179.97438 * 19 17 15 22 22 H 1.48489 * 109.47379 * 299.99497 * 19 17 15 23 23 C 1.47423 * 125.65040 * 180.02562 * 7 5 4 24 24 C 1.46677 * 118.97783 * 359.73697 * 4 3 2 25 25 O 1.21860 * 120.78258 * 179.97438 * 24 4 3 26 26 N 1.35151 * 118.43268 * 359.97438 * 24 4 3 27 27 H 0.97003 * 120.36878 * 179.97438 * 26 24 4 28 28 C 1.34895 * 119.26465 * 0.02562 * 26 24 4 29 29 C 1.50697 * 119.50085 * 179.97438 * 28 26 24 30 30 H 1.08999 * 109.46899 * 270.26604 * 1 2 3 31 31 H 1.08991 * 109.46784 * 30.26739 * 1 2 3 32 32 H 1.08997 * 109.47024 * 150.27182 * 1 2 3 33 33 H 1.09004 * 109.87940 * 300.51533 * 8 7 5 34 34 H 1.09001 * 109.88359 * 61.68009 * 8 7 5 35 35 H 1.09009 * 110.92247 * 264.10783 * 9 8 7 36 36 H 1.08998 * 110.74887 * 140.86026 * 9 8 7 37 37 H 1.09005 * 109.46861 * 298.67281 * 12 10 9 38 38 H 1.09001 * 109.47134 * 58.66522 * 12 10 9 39 39 H 1.09000 * 109.47225 * 95.12859 * 14 13 12 40 40 H 1.08993 * 109.46864 * 215.12958 * 14 13 12 41 41 H 1.09001 * 109.46713 * 335.12518 * 14 13 12 42 42 H 0.97004 * 119.99485 * 180.02562 * 18 17 15 43 43 H 1.09000 * 110.36984 * 274.67359 * 23 7 5 44 44 H 1.09009 * 110.36486 * 36.88530 * 23 7 5 45 45 H 1.09000 * 109.47078 * 359.97438 * 29 28 26 46 46 H 1.09000 * 109.47238 * 239.99509 * 29 28 26 47 47 H 1.09004 * 109.46625 * 119.99779 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1543 0.0000 4 6 3.4739 1.1882 -0.0051 5 6 4.1900 2.4777 -0.0113 6 8 5.4059 2.4979 -0.0164 7 7 3.4968 3.6335 -0.0114 8 6 2.0316 3.7538 -0.0121 9 6 1.6954 5.2597 -0.0370 10 6 2.9833 5.8914 -0.6282 11 1 2.9854 5.8283 -1.7163 12 6 3.1466 7.3406 -0.1656 13 7 4.3867 7.8924 -0.7168 14 6 4.3740 8.5668 -2.0173 15 6 5.5578 7.7779 -0.0163 16 1 5.6696 7.0009 0.7253 17 6 6.6012 8.6607 -0.2595 18 7 6.3873 9.7559 -0.9573 19 14 8.3086 8.2939 0.4036 20 1 8.7907 7.0057 -0.1559 21 1 9.2374 9.3832 0.0086 22 1 8.2550 8.2012 1.8846 23 6 4.0822 4.9865 -0.0179 24 6 4.2170 -0.0764 -0.0048 25 8 5.4356 -0.0836 -0.0098 26 7 3.5185 -1.2334 0.0012 27 1 3.9814 -2.0858 0.0011 28 6 2.1702 -1.1896 0.0061 29 6 1.3860 -2.4764 0.0122 30 1 -0.3633 0.0048 1.0277 31 1 -0.3632 0.8875 -0.5179 32 1 -0.3633 -0.8924 -0.5096 33 1 1.6200 3.2656 -0.8955 34 1 1.6219 3.2994 0.8900 35 1 1.5096 5.6337 0.9699 36 1 0.8392 5.4536 -0.6829 37 1 2.2994 7.9310 -0.5147 38 1 3.1872 7.3721 0.9232 39 1 4.2706 9.6416 -1.8682 40 1 5.3066 8.3609 -2.5424 41 1 3.5352 8.1996 -2.6087 42 1 7.1165 10.3726 -1.1275 43 1 4.3139 5.3044 0.9987 44 1 4.9803 5.0083 -0.6354 45 1 2.0744 -3.3214 0.0112 46 1 0.7547 -2.5214 -0.8753 47 1 0.7615 -2.5170 0.9047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664817485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:24 Heat of formation + Delta-G solvation = -22.425637 kcal Electronic energy + Delta-G solvation = -29377.053246 eV Core-core repulsion = 25367.345726 eV Total energy + Delta-G solvation = -4009.707521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.90792 -40.89868 -39.29576 -38.71126 -37.06444 -36.60067 -34.25341 -33.75240 -32.23620 -30.19693 -29.92168 -28.17423 -27.86368 -27.04300 -25.60631 -24.85207 -23.58807 -22.77633 -21.13634 -20.89977 -19.83437 -19.22470 -18.77999 -17.92379 -17.49659 -17.10944 -16.83497 -16.78025 -16.43160 -15.76132 -15.27000 -15.10838 -15.01816 -14.94833 -14.58999 -14.35301 -14.18060 -13.94187 -13.89952 -13.73572 -13.63523 -13.12272 -13.04771 -12.87089 -12.78455 -12.68578 -12.61276 -12.46679 -12.35348 -12.24935 -12.14233 -11.90836 -11.87499 -11.55872 -11.43937 -11.33582 -10.61572 -10.46828 -9.69759 -9.06481 -8.73056 -7.82087 -5.28378 -0.97462 0.49644 1.20337 1.39316 1.43194 1.50264 1.51536 1.99995 2.49090 2.51484 2.88349 2.98757 3.30526 3.41135 3.53547 3.74397 3.81786 3.84471 4.00818 4.12941 4.42736 4.53737 4.55865 4.66020 4.69785 4.77530 4.80104 4.87271 4.92340 4.96485 5.00564 5.01651 5.05491 5.09404 5.14337 5.20916 5.26154 5.28690 5.36361 5.44968 5.54483 5.55496 5.66433 5.75042 6.35127 6.38007 6.49552 6.59485 7.08711 7.18213 7.91727 8.32727 9.20223 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.002983 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.626119 B = 9384.594486 C =10685.087705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.049 4.049 3 N -0.328 5.328 4 C -0.062 4.062 5 C 0.577 3.423 6 O -0.580 6.580 7 N -0.603 5.603 8 C 0.122 3.878 9 C -0.116 4.116 10 C -0.105 4.105 11 H 0.068 0.932 12 C 0.161 3.839 13 N -0.619 5.619 14 C 0.176 3.824 15 C -0.248 4.248 16 H 0.064 0.936 17 C -0.051 4.051 18 N -0.935 5.935 19 Si 0.950 3.050 20 H -0.294 1.294 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.129 3.871 24 C 0.489 3.511 25 O -0.546 6.546 26 N -0.564 5.564 27 H 0.438 0.562 28 C 0.200 3.800 29 C -0.130 4.130 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.009 0.991 40 H 0.006 0.994 41 H 0.035 0.965 42 H 0.247 0.753 43 H 0.052 0.948 44 H 0.034 0.966 45 H 0.098 0.902 46 H 0.133 0.867 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.840 -29.042 1.766 38.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.181 4.181 3 N -0.046 5.046 4 C -0.222 4.222 5 C 0.366 3.634 6 O -0.459 6.459 7 N -0.336 5.336 8 C 0.001 3.999 9 C -0.154 4.154 10 C -0.127 4.127 11 H 0.087 0.913 12 C 0.035 3.965 13 N -0.342 5.342 14 C 0.031 3.969 15 C -0.379 4.379 16 H 0.081 0.919 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.779 3.221 20 H -0.221 1.221 21 H -0.213 1.213 22 H -0.200 1.200 23 C 0.007 3.993 24 C 0.284 3.716 25 O -0.424 6.424 26 N -0.198 5.198 27 H 0.281 0.719 28 C 0.081 3.919 29 C -0.187 4.187 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.130 0.870 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.027 0.973 40 H 0.025 0.975 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.117 0.883 46 H 0.151 0.849 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -23.800 -28.127 1.727 36.885 hybrid contribution 2.907 -0.632 0.175 2.980 sum -20.893 -28.758 1.902 35.597 Atomic orbital electron populations 1.20719 0.83291 1.05399 1.04527 1.21145 1.00059 0.85114 1.11734 1.67669 1.06715 1.31266 0.98912 1.22862 0.89838 0.91966 1.17524 1.17361 0.85702 0.82968 0.77402 1.90852 1.15132 1.87178 1.52725 1.48525 1.09734 1.04593 1.70742 1.22245 0.77296 0.97155 1.03242 1.22775 0.97008 0.92552 1.03072 1.22921 0.93983 0.96101 0.99730 0.91307 1.20874 0.87834 0.90876 0.96916 1.44144 1.04876 1.66544 1.18646 1.20537 0.96328 0.94821 0.85224 1.19372 0.92043 1.08824 1.17641 0.91857 1.25580 1.01767 0.95720 1.01499 1.70184 1.31160 1.11357 1.45533 0.85600 0.81462 0.76436 0.78574 1.22147 1.21312 1.20038 1.22084 0.97140 0.80376 0.99685 1.19062 0.87798 0.85229 0.79498 1.91030 1.13959 1.86194 1.51206 1.43745 1.07571 1.11261 1.57238 0.71864 1.22635 0.82303 1.01314 0.85668 1.21615 1.00831 0.88385 1.07852 0.89254 0.90627 0.87089 0.89963 0.89780 0.89442 0.86952 0.91326 0.93390 0.97317 0.97473 0.94683 0.94363 0.92978 0.94699 0.88302 0.84948 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 9.66 71.24 0.69 0.51 16 2 C -0.05 -0.57 6.70 42.03 0.28 -0.28 16 3 N -0.33 -7.16 6.93 -169.24 -1.17 -8.34 16 4 C -0.06 -1.99 6.92 43.71 0.30 -1.68 16 5 C 0.58 24.36 7.83 86.69 0.68 25.03 16 6 O -0.58 -31.08 15.76 15.53 0.24 -30.83 16 7 N -0.60 -22.36 3.33 -815.63 -2.71 -25.07 16 8 C 0.12 3.07 5.40 86.72 0.47 3.54 16 9 C -0.12 -2.67 6.42 31.78 0.20 -2.47 16 10 C -0.11 -3.63 3.29 -9.41 -0.03 -3.66 16 11 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 12 C 0.16 6.36 5.19 86.38 0.45 6.80 16 13 N -0.62 -32.02 2.87 -726.93 -2.09 -34.11 16 14 C 0.18 9.01 8.98 127.77 1.15 10.16 16 15 C -0.25 -14.47 8.98 84.03 0.75 -13.72 16 16 H 0.06 3.70 6.73 -2.91 -0.02 3.68 16 17 C -0.05 -3.05 5.09 84.86 0.43 -2.62 16 18 N -0.93 -58.18 10.71 21.65 0.23 -57.95 16 19 Si 0.95 49.95 29.57 68.60 2.03 51.98 16 20 H -0.29 -15.92 7.11 99.48 0.71 -15.21 16 21 H -0.29 -14.79 7.11 99.48 0.71 -14.09 16 22 H -0.27 -13.92 7.11 99.48 0.71 -13.21 16 23 C 0.13 5.45 5.07 86.85 0.44 5.89 16 24 C 0.49 14.84 7.93 86.39 0.68 15.52 16 25 O -0.55 -22.73 16.40 14.72 0.24 -22.49 16 26 N -0.56 -8.18 5.29 -301.76 -1.60 -9.78 16 27 H 0.44 3.49 8.64 -92.71 -0.80 2.69 16 28 C 0.20 1.41 6.78 41.61 0.28 1.69 16 29 C -0.13 0.72 8.83 71.23 0.63 1.35 16 30 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.11 -0.55 6.42 -2.39 -0.02 -0.56 16 33 H 0.08 1.87 7.45 -2.38 -0.02 1.85 16 34 H 0.08 1.87 7.55 -2.39 -0.02 1.85 16 35 H 0.09 1.85 8.04 -2.38 -0.02 1.83 16 36 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 2.37 8.07 -2.38 -0.02 2.35 16 38 H 0.05 1.91 8.00 -2.39 -0.02 1.89 16 39 H 0.01 0.47 7.34 -2.39 -0.02 0.46 16 40 H 0.01 0.37 7.33 -2.39 -0.02 0.35 16 41 H 0.03 1.49 8.03 -2.39 -0.02 1.47 16 42 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.05 2.32 7.44 -2.39 -0.02 2.30 16 44 H 0.03 1.79 8.03 -2.38 -0.02 1.77 16 45 H 0.10 -0.78 7.90 -2.39 -0.02 -0.80 16 46 H 0.13 -1.23 7.35 -2.39 -0.02 -1.25 16 47 H 0.13 -1.18 8.09 -2.39 -0.02 -1.20 16 Total: -1.00 -98.29 378.56 2.79 -95.50 By element: Atomic # 1 Polarization: -5.16 SS G_CDS: 0.20 Total: -4.96 kcal Atomic # 6 Polarization: 38.65 SS G_CDS: 7.41 Total: 46.06 kcal Atomic # 7 Polarization: -127.92 SS G_CDS: -7.34 Total: -135.25 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: 0.49 Total: -53.32 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.03 Total: 51.98 kcal Total: -98.29 2.79 -95.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664817485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.073 kcal (2) G-P(sol) polarization free energy of solvation -98.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds