Wall clock time and date at job start Tue Mar 31 2020 17:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32171 * 119.14322 * 2 1 4 4 C 1.32365 * 120.60851 * 180.30611 * 3 2 1 5 5 C 1.47496 * 120.51261 * 179.71615 * 4 3 2 6 6 O 1.21596 * 119.99936 * 179.72489 * 5 4 3 7 7 N 1.34777 * 119.99778 * 359.72891 * 5 4 3 8 8 C 1.46501 * 119.99695 * 185.19733 * 7 5 4 9 9 C 1.53007 * 109.46746 * 183.93276 * 8 7 5 10 10 C 1.52990 * 109.47357 * 63.93115 * 8 7 5 11 11 N 1.46505 * 109.47165 * 59.99847 * 10 8 7 12 12 C 1.36939 * 119.99823 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00094 * 0.02562 * 12 11 10 14 14 C 1.38817 * 119.99787 * 179.97438 * 12 11 10 15 15 N 1.31621 * 119.99846 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99847 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47058 * 60.00097 * 16 14 12 18 18 H 1.48498 * 109.46910 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47111 * 300.00153 * 16 14 12 20 20 C 1.52995 * 109.47136 * 303.92768 * 8 7 5 21 21 C 1.53005 * 117.50125 * 297.08546 * 20 8 7 22 22 C 1.52996 * 60.00099 * 252.51096 * 21 20 8 23 23 C 1.46678 * 118.97647 * 359.44733 * 4 3 2 24 24 O 1.21859 * 120.78183 * 180.24501 * 23 4 3 25 25 N 1.35150 * 118.43391 * 0.27310 * 23 4 3 26 26 H 0.97000 * 120.37040 * 180.02562 * 25 23 4 27 27 C 1.34896 * 119.26375 * 359.97438 * 25 23 4 28 28 C 1.50703 * 119.49956 * 179.97438 * 27 25 23 29 29 H 1.09007 * 109.47349 * 270.25159 * 1 2 3 30 30 H 1.08995 * 109.47537 * 30.25107 * 1 2 3 31 31 H 1.09000 * 109.47243 * 150.25912 * 1 2 3 32 32 H 0.97002 * 120.00151 * 5.19796 * 7 5 4 33 33 H 1.09001 * 109.46919 * 179.97438 * 9 8 7 34 34 H 1.09001 * 109.46833 * 299.99568 * 9 8 7 35 35 H 1.08994 * 109.47343 * 60.00157 * 9 8 7 36 36 H 1.09001 * 109.47150 * 179.97438 * 10 8 7 37 37 H 1.08997 * 109.47274 * 300.00211 * 10 8 7 38 38 H 0.96994 * 120.00077 * 0.02562 * 11 10 8 39 39 H 0.97001 * 119.99497 * 180.02562 * 15 14 12 40 40 H 1.09004 * 115.56118 * 82.77444 * 20 8 7 41 41 H 1.08999 * 117.49731 * 145.01454 * 21 20 8 42 42 H 1.08997 * 117.49846 * 0.02562 * 21 20 8 43 43 H 1.08990 * 117.49902 * 107.49156 * 22 21 20 44 44 H 1.09004 * 117.49768 * 252.50838 * 22 21 20 45 45 H 1.08996 * 109.46981 * 359.97438 * 28 27 25 46 46 H 1.08996 * 109.47214 * 120.00171 * 28 27 25 47 47 H 1.09001 * 109.46844 * 239.99853 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1544 0.0000 4 6 3.4738 1.1882 -0.0061 5 6 4.1900 2.4777 -0.0124 6 8 5.4057 2.4979 -0.0129 7 7 3.4967 3.6335 -0.0175 8 6 4.2035 4.9110 -0.1386 9 6 3.2016 6.0613 -0.0199 10 6 4.9014 4.9808 -1.4983 11 7 3.9036 4.8716 -2.5655 12 6 4.2967 4.9097 -3.8767 13 1 5.3422 5.0199 -4.1241 14 6 3.3514 4.8057 -4.8879 15 7 2.0773 4.6708 -4.5864 16 14 3.8876 4.8570 -6.6766 17 1 4.8246 3.7366 -6.9448 18 1 2.6967 4.7278 -7.5542 19 1 4.5676 6.1479 -6.9526 20 6 5.2454 5.0251 0.9759 21 6 4.7371 5.0451 2.4189 22 6 5.2792 6.3257 1.7810 23 6 4.2171 -0.0763 -0.0005 24 8 5.4356 -0.0835 -0.0013 25 7 3.5185 -1.2333 0.0051 26 1 3.9815 -2.0856 0.0093 27 6 2.1703 -1.1895 0.0058 28 6 1.3860 -2.4764 0.0115 29 1 -0.3634 0.0045 1.0277 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3634 -0.8923 -0.5098 32 1 2.5298 3.6194 0.0591 33 1 3.7275 7.0118 -0.1095 34 1 2.4593 5.9800 -0.8139 35 1 2.7044 6.0116 0.9488 36 1 5.4268 5.9315 -1.5886 37 1 5.6150 4.1613 -1.5829 38 1 2.9646 4.7730 -2.3433 39 1 1.4168 4.5978 -5.2931 40 1 6.1958 4.5271 0.7840 41 1 5.3530 4.5603 3.1762 42 1 3.6604 4.9766 2.5742 43 1 4.5591 7.1001 1.5166 44 1 6.2518 6.6835 2.1187 45 1 2.0745 -3.3214 0.0139 46 1 0.7588 -2.5157 0.9020 47 1 0.7575 -2.5227 -0.8779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666004672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:44 Heat of formation + Delta-G solvation = 15.243606 kcal Electronic energy + Delta-G solvation = -30083.926612 eV Core-core repulsion = 26075.852552 eV Total energy + Delta-G solvation = -4008.074060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.75532 -39.78473 -37.98375 -37.34746 -35.43567 -34.82034 -33.39846 -33.04249 -31.10164 -29.55653 -28.95258 -26.84017 -25.99775 -24.72551 -23.87312 -23.17211 -22.12149 -21.28502 -20.74129 -18.99463 -18.41030 -18.26690 -17.15626 -16.79296 -16.25973 -15.98541 -15.63299 -15.07152 -14.41734 -14.30984 -14.25849 -14.09697 -13.98896 -13.72082 -13.41425 -13.27661 -13.06665 -13.03013 -12.72499 -12.22569 -12.19045 -11.98125 -11.86502 -11.74389 -11.34210 -11.22847 -11.13711 -10.94581 -10.79906 -10.72284 -10.50542 -10.20256 -10.09103 -9.77547 -9.72551 -9.53502 -9.08538 -8.71862 -8.42566 -8.01279 -6.75630 -5.65076 -2.90866 0.13533 1.64881 2.33427 2.92742 3.41963 3.51777 3.54649 3.57187 3.84300 3.91868 4.08043 4.16720 4.34198 4.49852 4.67801 4.87831 4.92060 5.07236 5.11505 5.23054 5.26043 5.31927 5.43149 5.48014 5.49522 5.59712 5.70851 5.78388 5.80619 5.88250 5.96652 6.06759 6.14006 6.23552 6.30066 6.34295 6.36067 6.41363 6.66159 6.69874 6.75193 7.02465 7.22718 7.47966 7.74065 7.82616 8.10442 8.54651 8.77375 9.65843 10.24743 10.60996 11.58067 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008035 B = 0.004873 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.946643 B = 5745.155674 C = 7761.131528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.026 4.026 3 N -0.350 5.350 4 C 0.022 3.978 5 C 0.590 3.410 6 O -0.504 6.504 7 N -0.691 5.691 8 C 0.202 3.798 9 C -0.153 4.153 10 C 0.145 3.855 11 N -0.726 5.726 12 C -0.229 4.229 13 H 0.068 0.932 14 C -0.016 4.016 15 N -0.936 5.936 16 Si 0.904 3.096 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.287 1.287 20 C -0.143 4.143 21 C -0.175 4.175 22 C -0.182 4.182 23 C 0.496 3.504 24 O -0.484 6.484 25 N -0.588 5.588 26 H 0.418 0.582 27 C 0.143 3.857 28 C -0.125 4.125 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.404 0.596 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.027 0.973 37 H 0.039 0.961 38 H 0.383 0.617 39 H 0.253 0.747 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.098 0.902 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 -11.740 16.135 20.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.151 4.151 3 N -0.067 5.067 4 C -0.147 4.147 5 C 0.373 3.627 6 O -0.376 6.376 7 N -0.342 5.342 8 C 0.116 3.884 9 C -0.211 4.211 10 C 0.017 3.983 11 N -0.371 5.371 12 C -0.360 4.360 13 H 0.086 0.914 14 C -0.211 4.211 15 N -0.586 5.586 16 Si 0.736 3.264 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.213 1.213 20 C -0.162 4.162 21 C -0.212 4.212 22 C -0.220 4.220 23 C 0.287 3.713 24 O -0.355 6.355 25 N -0.224 5.224 26 H 0.258 0.742 27 C 0.028 3.972 28 C -0.182 4.182 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.240 0.760 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.217 0.783 39 H 0.062 0.938 40 H 0.135 0.865 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.118 0.882 44 H 0.107 0.893 45 H 0.095 0.905 46 H 0.117 0.883 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.867 -10.906 15.958 19.932 hybrid contribution 0.072 -1.366 -1.094 1.752 sum -4.795 -12.272 14.864 19.863 Atomic orbital electron populations 1.20531 0.87044 1.03988 1.02743 1.20116 0.97884 0.85634 1.11512 1.67535 1.08464 1.29408 1.01305 1.24093 0.88816 0.94167 1.07630 1.16834 0.86491 0.81896 0.77500 1.90821 1.12349 1.86299 1.48167 1.45691 1.10583 1.04505 1.73458 1.20054 0.91334 0.82267 0.94734 1.22116 0.99464 0.97674 1.01814 1.21021 0.92682 0.98926 0.85687 1.42266 1.05247 1.88482 1.01070 1.19209 0.92802 1.40998 0.83001 0.91413 1.24662 0.95374 1.03500 0.97604 1.69649 0.99645 1.57933 1.31333 0.86301 0.76941 0.77817 0.85386 1.21508 1.21830 1.21345 1.22618 1.01476 1.00772 0.91342 1.22789 1.00754 1.01571 0.96106 1.23132 1.02620 0.91648 1.04567 1.19136 0.88469 0.83999 0.79664 1.91047 1.11421 1.85276 1.47769 1.43738 1.06328 1.11871 1.60433 0.74167 1.21481 0.83539 0.98884 0.93304 1.21168 1.00410 0.91450 1.05205 0.90936 0.89828 0.90875 0.76033 0.90632 0.90563 0.92787 0.95493 0.94355 0.78302 0.93767 0.86545 0.89547 0.89200 0.88185 0.89257 0.90526 0.88339 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 9.65 36.00 0.35 -0.32 16 2 C -0.03 -0.29 6.70 -83.18 -0.56 -0.85 16 3 N -0.35 -5.28 9.58 -4.85 -0.05 -5.33 16 4 C 0.02 0.40 6.96 -80.46 -0.56 -0.16 16 5 C 0.59 11.85 7.21 -12.49 -0.09 11.76 16 6 O -0.50 -11.60 12.32 -15.19 -0.19 -11.79 16 7 N -0.69 -12.43 4.70 -48.65 -0.23 -12.66 16 8 C 0.20 3.62 0.54 -131.82 -0.07 3.55 16 9 C -0.15 -2.41 7.04 37.16 0.26 -2.15 16 10 C 0.15 3.28 5.02 -4.04 -0.02 3.26 16 11 N -0.73 -19.17 5.18 -59.91 -0.31 -19.48 16 12 C -0.23 -6.73 9.99 -15.06 -0.15 -6.88 16 13 H 0.07 1.98 7.83 -52.49 -0.41 1.56 16 14 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 15 N -0.94 -28.68 13.06 55.49 0.72 -27.95 16 16 Si 0.90 23.35 29.55 -169.99 -5.02 18.32 16 17 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 18 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 C -0.14 -2.33 4.05 -90.62 -0.37 -2.70 16 21 C -0.17 -2.39 9.81 -26.73 -0.26 -2.65 16 22 C -0.18 -2.40 9.61 -26.73 -0.26 -2.66 16 23 C 0.50 8.36 7.93 -12.68 -0.10 8.26 16 24 O -0.48 -9.99 16.40 -15.43 -0.25 -10.24 16 25 N -0.59 -6.47 5.29 -9.45 -0.05 -6.52 16 26 H 0.42 3.25 8.64 -40.82 -0.35 2.89 16 27 C 0.14 1.28 6.78 -81.98 -0.56 0.73 16 28 C -0.12 -0.47 8.83 36.01 0.32 -0.15 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.38 6.43 -51.93 -0.33 0.04 16 32 H 0.40 6.69 7.85 -40.82 -0.32 6.37 16 33 H 0.07 1.14 6.83 -51.93 -0.35 0.78 16 34 H 0.08 1.36 6.86 -51.93 -0.36 1.00 16 35 H 0.05 0.71 7.01 -51.93 -0.36 0.34 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.04 0.98 6.64 -51.93 -0.34 0.63 16 38 H 0.38 10.30 6.35 -40.82 -0.26 10.05 16 39 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.12 2.17 7.18 -51.93 -0.37 1.80 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.09 1.16 7.42 -51.93 -0.39 0.77 16 43 H 0.10 1.23 5.87 -51.93 -0.30 0.93 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.08 0.17 7.89 -51.93 -0.41 -0.24 16 46 H 0.10 0.21 8.09 -51.93 -0.42 -0.21 16 47 H 0.10 0.30 7.36 -51.93 -0.38 -0.08 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -38.28 380.30 -8.42 -46.70 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -6.62 Total: 14.75 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -2.16 Total: 8.46 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: 0.09 Total: -71.93 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.44 Total: -22.03 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.28 -8.42 -46.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666004672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.945 kcal (2) G-P(sol) polarization free energy of solvation -38.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds