Wall clock time and date at job start Tue Mar 31 2020 17:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32171 * 119.14322 * 2 1 4 4 C 1.32365 * 120.60851 * 180.30611 * 3 2 1 5 5 C 1.47496 * 120.51261 * 179.71615 * 4 3 2 6 6 O 1.21596 * 119.99936 * 179.72489 * 5 4 3 7 7 N 1.34777 * 119.99778 * 359.72891 * 5 4 3 8 8 C 1.46501 * 119.99695 * 185.19733 * 7 5 4 9 9 C 1.53007 * 109.46746 * 183.93276 * 8 7 5 10 10 C 1.52990 * 109.47357 * 63.93115 * 8 7 5 11 11 N 1.46505 * 109.47165 * 59.99847 * 10 8 7 12 12 C 1.36939 * 119.99823 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00094 * 0.02562 * 12 11 10 14 14 C 1.38817 * 119.99787 * 179.97438 * 12 11 10 15 15 N 1.31621 * 119.99846 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99847 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47058 * 60.00097 * 16 14 12 18 18 H 1.48498 * 109.46910 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47111 * 300.00153 * 16 14 12 20 20 C 1.52995 * 109.47136 * 303.92768 * 8 7 5 21 21 C 1.53005 * 117.50125 * 297.08546 * 20 8 7 22 22 C 1.52996 * 60.00099 * 252.51096 * 21 20 8 23 23 C 1.46678 * 118.97647 * 359.44733 * 4 3 2 24 24 O 1.21859 * 120.78183 * 180.24501 * 23 4 3 25 25 N 1.35150 * 118.43391 * 0.27310 * 23 4 3 26 26 H 0.97000 * 120.37040 * 180.02562 * 25 23 4 27 27 C 1.34896 * 119.26375 * 359.97438 * 25 23 4 28 28 C 1.50703 * 119.49956 * 179.97438 * 27 25 23 29 29 H 1.09007 * 109.47349 * 270.25159 * 1 2 3 30 30 H 1.08995 * 109.47537 * 30.25107 * 1 2 3 31 31 H 1.09000 * 109.47243 * 150.25912 * 1 2 3 32 32 H 0.97002 * 120.00151 * 5.19796 * 7 5 4 33 33 H 1.09001 * 109.46919 * 179.97438 * 9 8 7 34 34 H 1.09001 * 109.46833 * 299.99568 * 9 8 7 35 35 H 1.08994 * 109.47343 * 60.00157 * 9 8 7 36 36 H 1.09001 * 109.47150 * 179.97438 * 10 8 7 37 37 H 1.08997 * 109.47274 * 300.00211 * 10 8 7 38 38 H 0.96994 * 120.00077 * 0.02562 * 11 10 8 39 39 H 0.97001 * 119.99497 * 180.02562 * 15 14 12 40 40 H 1.09004 * 115.56118 * 82.77444 * 20 8 7 41 41 H 1.08999 * 117.49731 * 145.01454 * 21 20 8 42 42 H 1.08997 * 117.49846 * 0.02562 * 21 20 8 43 43 H 1.08990 * 117.49902 * 107.49156 * 22 21 20 44 44 H 1.09004 * 117.49768 * 252.50838 * 22 21 20 45 45 H 1.08996 * 109.46981 * 359.97438 * 28 27 25 46 46 H 1.08996 * 109.47214 * 120.00171 * 28 27 25 47 47 H 1.09001 * 109.46844 * 239.99853 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1544 0.0000 4 6 3.4738 1.1882 -0.0061 5 6 4.1900 2.4777 -0.0124 6 8 5.4057 2.4979 -0.0129 7 7 3.4967 3.6335 -0.0175 8 6 4.2035 4.9110 -0.1386 9 6 3.2016 6.0613 -0.0199 10 6 4.9014 4.9808 -1.4983 11 7 3.9036 4.8716 -2.5655 12 6 4.2967 4.9097 -3.8767 13 1 5.3422 5.0199 -4.1241 14 6 3.3514 4.8057 -4.8879 15 7 2.0773 4.6708 -4.5864 16 14 3.8876 4.8570 -6.6766 17 1 4.8246 3.7366 -6.9448 18 1 2.6967 4.7278 -7.5542 19 1 4.5676 6.1479 -6.9526 20 6 5.2454 5.0251 0.9759 21 6 4.7371 5.0451 2.4189 22 6 5.2792 6.3257 1.7810 23 6 4.2171 -0.0763 -0.0005 24 8 5.4356 -0.0835 -0.0013 25 7 3.5185 -1.2333 0.0051 26 1 3.9815 -2.0856 0.0093 27 6 2.1703 -1.1895 0.0058 28 6 1.3860 -2.4764 0.0115 29 1 -0.3634 0.0045 1.0277 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3634 -0.8923 -0.5098 32 1 2.5298 3.6194 0.0591 33 1 3.7275 7.0118 -0.1095 34 1 2.4593 5.9800 -0.8139 35 1 2.7044 6.0116 0.9488 36 1 5.4268 5.9315 -1.5886 37 1 5.6150 4.1613 -1.5829 38 1 2.9646 4.7730 -2.3433 39 1 1.4168 4.5978 -5.2931 40 1 6.1958 4.5271 0.7840 41 1 5.3530 4.5603 3.1762 42 1 3.6604 4.9766 2.5742 43 1 4.5591 7.1001 1.5166 44 1 6.2518 6.6835 2.1187 45 1 2.0745 -3.3214 0.0139 46 1 0.7588 -2.5157 0.9020 47 1 0.7575 -2.5227 -0.8779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666004672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:42 Heat of formation + Delta-G solvation = -14.587282 kcal Electronic energy + Delta-G solvation = -30085.220176 eV Core-core repulsion = 26075.852552 eV Total energy + Delta-G solvation = -4009.367624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.84814 -41.19032 -39.19531 -38.68874 -36.59421 -36.53284 -34.98523 -34.10072 -32.99025 -30.99827 -29.85187 -27.93223 -27.64166 -25.69412 -25.58113 -24.48734 -23.27019 -22.89030 -21.98674 -20.28268 -19.65408 -19.51816 -19.16327 -18.00559 -17.36030 -17.23595 -16.92848 -16.80497 -16.23751 -15.69077 -15.55738 -15.24562 -15.03869 -14.98790 -14.91136 -14.50688 -14.05768 -13.87935 -13.82491 -13.63891 -13.55773 -13.26208 -12.97877 -12.80357 -12.75934 -12.71630 -12.45102 -12.38809 -12.30806 -12.19590 -12.09661 -11.99829 -11.73462 -11.47152 -11.05668 -10.96958 -10.89387 -10.37052 -9.92890 -9.04606 -8.96414 -7.94559 -5.21636 -0.91286 0.52718 1.28351 1.42540 1.46282 1.52320 1.66233 2.18874 2.54420 2.63961 2.93183 3.01183 3.17837 3.37450 3.43038 3.56805 3.77411 3.93667 3.98349 4.09297 4.19690 4.26252 4.35834 4.54369 4.55069 4.64651 4.71421 4.77918 4.87507 4.90048 4.93808 4.95677 4.99324 5.02628 5.07312 5.15083 5.22033 5.27808 5.30581 5.31322 5.43744 5.45869 5.51648 5.69315 6.27577 6.40808 6.58123 6.74602 7.34386 7.36617 8.07791 8.38306 9.28207 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008035 B = 0.004873 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.946643 B = 5745.155674 C = 7761.131528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.052 4.052 3 N -0.343 5.343 4 C -0.060 4.060 5 C 0.582 3.418 6 O -0.552 6.552 7 N -0.685 5.685 8 C 0.208 3.792 9 C -0.143 4.143 10 C 0.149 3.851 11 N -0.729 5.729 12 C -0.250 4.250 13 H 0.061 0.939 14 C -0.066 4.066 15 N -0.961 5.961 16 Si 0.969 3.031 17 H -0.288 1.288 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.171 4.171 21 C -0.160 4.160 22 C -0.159 4.159 23 C 0.488 3.512 24 O -0.542 6.542 25 N -0.565 5.565 26 H 0.437 0.563 27 C 0.192 3.808 28 C -0.128 4.128 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.409 0.591 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.027 0.973 37 H 0.001 0.999 38 H 0.379 0.621 39 H 0.253 0.747 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.117 0.883 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.133 0.867 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.116 -13.647 17.033 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.182 4.182 3 N -0.061 5.061 4 C -0.222 4.222 5 C 0.368 3.632 6 O -0.429 6.429 7 N -0.336 5.336 8 C 0.123 3.877 9 C -0.200 4.200 10 C 0.022 3.978 11 N -0.372 5.372 12 C -0.382 4.382 13 H 0.079 0.921 14 C -0.259 4.259 15 N -0.611 5.611 16 Si 0.798 3.202 17 H -0.215 1.215 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.191 4.191 21 C -0.197 4.197 22 C -0.196 4.196 23 C 0.283 3.717 24 O -0.419 6.419 25 N -0.200 5.200 26 H 0.280 0.720 27 C 0.073 3.927 28 C -0.184 4.184 29 H 0.113 0.887 30 H 0.082 0.918 31 H 0.128 0.872 32 H 0.245 0.755 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.045 0.955 37 H 0.019 0.981 38 H 0.212 0.788 39 H 0.061 0.939 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.135 0.865 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.151 0.849 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.886 -12.782 16.876 22.591 hybrid contribution 0.800 -1.092 -1.353 1.914 sum -7.086 -13.874 15.523 21.993 Atomic orbital electron populations 1.20691 0.83921 1.04846 1.04491 1.21018 0.99886 0.85372 1.11960 1.67435 1.07429 1.31891 0.99351 1.23427 0.89697 0.93367 1.15715 1.17311 0.86268 0.83226 0.76405 1.90769 1.14289 1.87202 1.50608 1.45644 1.10643 1.04279 1.73067 1.19919 0.92117 0.83256 0.92445 1.22052 0.98338 0.96866 1.02774 1.21012 0.91883 0.97125 0.87825 1.42313 1.05596 1.88262 1.01058 1.19514 0.92735 1.41244 0.84680 0.92121 1.25435 0.95480 1.03419 1.01585 1.69789 1.00399 1.58500 1.32419 0.85284 0.76640 0.77952 0.80301 1.21523 1.21166 1.20234 1.22322 0.99955 1.04131 0.92647 1.22854 1.01545 1.01499 0.93796 1.23261 1.03697 0.90842 1.01770 1.19110 0.87928 0.85222 0.79480 1.90995 1.13542 1.86206 1.51205 1.43689 1.07386 1.11321 1.57566 0.71951 1.22521 0.82513 1.01055 0.86587 1.21576 1.00806 0.88394 1.07654 0.88693 0.91837 0.87209 0.75458 0.89633 0.92861 0.89420 0.95499 0.98143 0.78779 0.93868 0.90001 0.89143 0.87923 0.86540 0.87898 0.88035 0.84923 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 9.65 71.24 0.69 -0.28 16 2 C -0.05 -1.06 6.70 42.03 0.28 -0.78 16 3 N -0.34 -10.57 9.58 -169.24 -1.62 -12.20 16 4 C -0.06 -2.30 6.96 43.71 0.30 -2.00 16 5 C 0.58 25.71 7.21 86.68 0.63 26.33 16 6 O -0.55 -28.45 12.32 15.56 0.19 -28.26 16 7 N -0.69 -26.52 4.70 -426.09 -2.00 -28.52 16 8 C 0.21 7.92 0.54 3.60 0.00 7.92 16 9 C -0.14 -4.50 7.04 71.98 0.51 -3.99 16 10 C 0.15 7.29 5.02 86.38 0.43 7.73 16 11 N -0.73 -40.62 5.18 -343.45 -1.78 -42.40 16 12 C -0.25 -15.31 9.99 84.03 0.84 -14.47 16 13 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 14 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 15 N -0.96 -59.87 13.06 21.65 0.28 -59.58 16 16 Si 0.97 48.74 29.55 68.60 2.03 50.77 16 17 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 18 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 19 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 20 C -0.17 -5.89 4.05 -10.79 -0.04 -5.93 16 21 C -0.16 -4.30 9.81 30.59 0.30 -4.00 16 22 C -0.16 -4.02 9.61 30.59 0.29 -3.72 16 23 C 0.49 17.43 7.93 86.39 0.68 18.11 16 24 O -0.54 -24.42 16.40 14.72 0.24 -24.18 16 25 N -0.56 -11.67 5.29 -301.75 -1.60 -13.27 16 26 H 0.44 5.85 8.64 -92.71 -0.80 5.05 16 27 C 0.19 2.77 6.78 41.61 0.28 3.05 16 28 C -0.13 -0.13 8.83 71.24 0.63 0.50 16 29 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.11 0.48 6.43 -2.39 -0.02 0.46 16 32 H 0.41 14.41 7.85 -92.71 -0.73 13.68 16 33 H 0.08 2.50 6.83 -2.39 -0.02 2.49 16 34 H 0.05 1.93 6.86 -2.39 -0.02 1.92 16 35 H 0.09 2.15 7.01 -2.39 -0.02 2.13 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.00 0.03 6.64 -2.39 -0.02 0.02 16 38 H 0.38 21.43 6.35 -92.71 -0.59 20.84 16 39 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.08 3.40 7.18 -2.38 -0.02 3.38 16 41 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.10 2.50 7.42 -2.39 -0.02 2.48 16 43 H 0.12 2.59 5.87 -2.39 -0.01 2.58 16 44 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 45 H 0.10 -0.24 7.89 -2.39 -0.02 -0.26 16 46 H 0.13 -0.46 8.09 -2.39 -0.02 -0.48 16 47 H 0.13 -0.18 7.36 -2.39 -0.02 -0.20 16 Total: -1.00 -93.54 380.30 0.97 -92.57 By element: Atomic # 1 Polarization: 41.23 SS G_CDS: -1.07 Total: 40.16 kcal Atomic # 6 Polarization: 18.62 SS G_CDS: 6.29 Total: 24.92 kcal Atomic # 7 Polarization: -149.26 SS G_CDS: -6.71 Total: -155.97 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: 0.43 Total: -52.44 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.03 Total: 50.77 kcal Total: -93.54 0.97 -92.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666004672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.987 kcal (2) G-P(sol) polarization free energy of solvation -93.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds