Wall clock time and date at job start Tue Mar 31 2020 18:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34492 * 126.82903 * 2 1 4 4 N 1.36449 * 108.85351 * 179.97438 * 3 2 1 5 5 H 0.96998 * 124.85029 * 180.02562 * 4 3 2 6 6 C 1.34665 * 110.29821 * 0.02562 * 4 3 2 7 7 C 1.36770 * 108.39400 * 359.74904 * 6 4 3 8 8 C 1.47266 * 126.93839 * 180.25136 * 7 6 4 9 9 O 1.21628 * 120.00031 * 180.15148 * 8 7 6 10 10 N 1.34775 * 120.00129 * 0.14788 * 8 7 6 11 11 C 1.46504 * 120.00010 * 180.02562 * 10 8 7 12 12 C 1.52998 * 110.28577 * 59.30076 * 11 10 8 13 13 C 1.54264 * 110.32128 * 297.17433 * 11 10 8 14 14 C 1.54612 * 104.94675 * 241.13104 * 13 11 10 15 15 N 1.48559 * 104.63533 * 23.78096 * 14 13 11 16 16 C 1.46906 * 110.99876 * 200.99960 * 15 14 13 17 17 C 1.50704 * 109.46793 * 285.41897 * 16 15 14 18 18 O 1.21289 * 120.00223 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99600 * 180.02562 * 17 16 15 20 20 C 1.37107 * 119.99766 * 180.02562 * 19 17 16 21 21 H 1.07993 * 119.99669 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99819 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99964 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99644 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47354 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47244 * 119.99917 * 24 22 20 27 27 H 1.48504 * 109.46757 * 239.99709 * 24 22 20 28 28 C 1.48564 * 104.22467 * 320.55364 * 15 14 13 29 29 H 1.08999 * 109.46995 * 90.02751 * 1 2 3 30 30 H 1.08994 * 109.46790 * 210.02438 * 1 2 3 31 31 H 1.08997 * 109.47305 * 330.02879 * 1 2 3 32 32 H 1.07993 * 125.57374 * 359.97438 * 3 2 1 33 33 H 1.07999 * 125.79969 * 179.97438 * 6 4 3 34 34 H 0.96997 * 119.99794 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.47181 * 60.70276 * 12 11 10 36 36 H 1.08997 * 109.46451 * 180.70161 * 12 11 10 37 37 H 1.08999 * 109.47295 * 300.69911 * 12 11 10 38 38 H 1.08996 * 110.32282 * 359.97438 * 13 11 10 39 39 H 1.08999 * 110.32315 * 122.20681 * 13 11 10 40 40 H 1.08997 * 110.36128 * 265.00553 * 14 13 11 41 41 H 1.09000 * 110.52336 * 142.64147 * 14 13 11 42 42 H 1.08994 * 109.47262 * 45.41759 * 16 15 14 43 43 H 1.09000 * 109.46868 * 165.41789 * 16 15 14 44 44 H 0.97001 * 120.00281 * 359.97438 * 19 17 16 45 45 H 0.97005 * 119.99651 * 180.02562 * 23 22 20 46 46 H 1.09000 * 110.41223 * 280.70915 * 28 15 14 47 47 H 1.08992 * 110.41334 * 158.26417 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6111 0.6554 0.0006 5 1 4.3840 1.2415 0.0011 6 6 3.6657 -0.6901 0.0004 7 6 2.3865 -1.1739 0.0054 8 6 1.9751 -2.5880 0.0122 9 8 0.7938 -2.8777 0.0133 10 7 2.9075 -3.5611 0.0170 11 6 2.4983 -4.9678 0.0232 12 6 1.6472 -5.2780 -1.2098 13 6 1.7136 -5.2918 1.3113 14 6 2.5489 -6.3803 2.0239 15 7 3.9285 -6.1946 1.5049 16 6 4.7261 -7.4155 1.6814 17 6 5.1058 -7.5621 3.1324 18 8 4.7476 -6.7311 3.9400 19 7 5.8442 -8.6162 3.5325 20 6 6.1892 -8.7499 4.8527 21 1 5.8695 -8.0103 5.5718 22 6 6.9501 -9.8369 5.2653 23 7 7.3386 -10.7370 4.3902 24 14 7.4206 -10.0186 7.0639 25 1 6.8642 -8.8804 7.8386 26 1 6.8720 -11.2932 7.5928 27 1 8.9003 -10.0264 7.1900 28 6 3.7381 -5.8867 0.0641 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 1.9868 2.1059 -0.0004 33 1 4.5665 -1.2858 0.0004 34 1 3.8496 -3.3300 0.0164 35 1 2.2316 -5.0920 -2.1109 36 1 1.3400 -6.3235 -1.1853 37 1 0.7637 -4.6397 -1.2114 38 1 1.6334 -4.4043 1.9390 39 1 0.7228 -5.6736 1.0651 40 1 2.1768 -7.3722 1.7678 41 1 2.5260 -6.2337 3.1037 42 1 4.1404 -8.2803 1.3699 43 1 5.6291 -7.3505 1.0743 44 1 6.1310 -9.2806 2.8866 45 1 7.8694 -11.4960 4.6784 46 1 3.5520 -6.8014 -0.4988 47 1 4.6101 -5.3664 -0.3320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671695046.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:58 Heat of formation + Delta-G solvation = -17.409023 kcal Electronic energy + Delta-G solvation = -28672.507539 eV Core-core repulsion = 24663.017555 eV Total energy + Delta-G solvation = -4009.489984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38660 -40.06662 -38.47609 -37.38581 -34.49264 -33.75405 -32.57931 -31.89803 -31.17112 -29.82881 -29.09619 -27.55652 -26.70189 -25.31561 -23.96402 -23.18097 -21.34361 -20.61083 -19.44484 -19.23712 -18.94959 -18.50929 -17.81882 -16.37060 -16.29952 -15.87320 -15.24182 -15.03329 -14.57569 -14.44983 -14.22454 -14.04162 -13.90146 -13.70496 -13.65024 -13.36876 -13.08752 -12.87444 -12.80042 -12.49212 -12.42408 -12.22317 -11.97762 -11.84741 -11.52814 -11.49703 -11.39672 -11.09618 -10.90110 -10.84931 -10.56523 -10.32814 -10.20266 -9.57243 -9.47947 -9.01935 -8.73309 -8.49184 -8.47684 -7.99280 -7.91979 -6.39499 -3.79965 1.63295 2.22148 2.96347 3.17620 3.27908 3.29273 3.35370 3.58937 3.93992 4.04865 4.28654 4.47323 4.63797 4.82544 4.87114 4.91937 5.06956 5.16643 5.22465 5.27802 5.40071 5.42583 5.48020 5.59004 5.62567 5.68737 5.74094 5.75604 5.80605 5.85830 5.88112 5.95882 6.07784 6.14192 6.25180 6.30608 6.36570 6.49298 6.61031 6.69983 6.71126 7.13265 7.18979 7.22180 7.57625 7.69669 8.09305 8.44363 8.65027 9.21226 9.57730 10.10109 10.78519 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018823 B = 0.002264 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.165255 B =12364.354010 C =13068.688864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.110 4.110 3 C -0.030 4.030 4 N -0.550 5.550 5 H 0.417 0.583 6 C 0.048 3.952 7 C -0.225 4.225 8 C 0.591 3.409 9 O -0.541 6.541 10 N -0.713 5.713 11 C 0.177 3.823 12 C -0.158 4.158 13 C -0.118 4.118 14 C 0.036 3.964 15 N -0.482 5.482 16 C 0.033 3.967 17 C 0.447 3.553 18 O -0.575 6.575 19 N -0.568 5.568 20 C -0.296 4.296 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.028 3.972 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.167 0.833 33 H 0.172 0.828 34 H 0.397 0.603 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.096 0.904 42 H 0.051 0.949 43 H 0.088 0.912 44 H 0.391 0.609 45 H 0.270 0.730 46 H 0.057 0.943 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.426 18.463 -15.043 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C -0.157 4.157 4 N -0.144 5.144 5 H 0.253 0.747 6 C -0.089 4.089 7 C -0.236 4.236 8 C 0.380 3.620 9 O -0.419 6.419 10 N -0.364 5.364 11 C 0.091 3.909 12 C -0.216 4.216 13 C -0.157 4.157 14 C -0.091 4.091 15 N -0.206 5.206 16 C -0.098 4.098 17 C 0.232 3.768 18 O -0.458 6.458 19 N -0.205 5.205 20 C -0.425 4.425 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.101 4.101 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.184 0.816 33 H 0.189 0.811 34 H 0.232 0.768 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.106 0.894 44 H 0.224 0.776 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.020 19.156 -14.165 25.138 hybrid contribution 1.213 -0.973 0.062 1.557 sum -6.807 18.182 -14.103 23.996 Atomic orbital electron populations 1.20185 0.89363 1.02628 1.01804 1.20561 0.95626 0.90378 1.05034 1.21569 0.82486 0.99193 1.12474 1.41486 1.08297 1.06722 1.57922 0.74677 1.21973 0.98678 0.83861 1.04375 1.20433 0.92614 0.92995 1.17568 1.17328 0.85456 0.83808 0.75431 1.90699 1.17191 1.83570 1.50473 1.45942 1.09385 1.05226 1.75885 1.20939 0.94023 0.80270 0.95711 1.22206 1.01154 1.02141 0.96088 1.22714 0.98055 0.99587 0.95321 1.23240 0.87307 0.96563 1.02029 1.65148 1.12227 1.32873 1.10310 1.22070 0.98676 0.91417 0.97674 1.19702 0.84013 0.84073 0.89040 1.90518 1.57872 1.43011 1.54440 1.41873 1.46756 1.22000 1.09860 1.19736 1.29893 1.08233 0.84675 0.87926 1.25249 0.97195 0.95636 0.99987 1.69622 1.37785 1.12700 1.34390 0.85815 0.78113 0.78295 0.82212 1.19245 1.20798 1.20799 1.23431 0.97061 0.98329 0.91263 0.91985 0.90177 0.92541 0.81556 0.81095 0.76832 0.92770 0.91917 0.89978 0.90522 0.90794 0.94311 0.88592 0.93062 0.89398 0.77561 0.91999 0.92476 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.98 36.01 0.36 -0.48 16 2 C -0.11 -1.18 6.35 -102.54 -0.65 -1.83 16 3 C -0.03 -0.23 11.82 -16.82 -0.20 -0.43 16 4 N -0.55 -3.53 5.90 -12.84 -0.08 -3.61 16 5 H 0.42 1.24 8.96 -40.82 -0.37 0.87 16 6 C 0.05 0.39 11.40 -16.84 -0.19 0.20 16 7 C -0.23 -2.59 6.29 -103.35 -0.65 -3.24 16 8 C 0.59 7.87 6.99 -12.59 -0.09 7.78 16 9 O -0.54 -8.59 12.60 5.25 0.07 -8.53 16 10 N -0.71 -8.33 5.08 -47.43 -0.24 -8.57 16 11 C 0.18 2.20 1.01 -130.43 -0.13 2.06 16 12 C -0.16 -1.78 8.15 37.16 0.30 -1.48 16 13 C -0.12 -1.71 5.54 -25.22 -0.14 -1.85 16 14 C 0.04 0.60 5.93 -2.06 -0.01 0.59 16 15 N -0.48 -7.94 4.98 -231.26 -1.15 -9.09 16 16 C 0.03 0.59 5.32 -4.97 -0.03 0.57 16 17 C 0.45 10.57 7.63 -10.98 -0.08 10.49 16 18 O -0.58 -15.68 14.80 5.55 0.08 -15.60 16 19 N -0.57 -14.42 5.29 -10.96 -0.06 -14.48 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 24 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 C 0.03 0.34 5.65 -2.18 -0.01 0.33 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.00 6.84 -51.93 -0.36 0.64 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.17 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.17 0.93 7.45 -52.49 -0.39 0.54 16 34 H 0.40 3.84 7.21 -40.82 -0.29 3.55 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.08 6.17 -51.93 -0.32 0.76 16 38 H 0.08 1.26 7.40 -51.93 -0.38 0.87 16 39 H 0.07 1.02 7.71 -51.93 -0.40 0.62 16 40 H 0.04 0.60 7.75 -51.93 -0.40 0.20 16 41 H 0.10 1.88 7.23 -51.93 -0.38 1.51 16 42 H 0.05 0.83 7.77 -51.93 -0.40 0.43 16 43 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 44 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.06 0.65 7.72 -51.93 -0.40 0.25 16 47 H 0.08 0.90 7.76 -51.93 -0.40 0.50 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -35.11 381.86 -8.55 -43.66 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -6.86 Total: 13.51 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -1.76 Total: 4.73 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.80 Total: -59.69 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: 0.15 Total: -24.12 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.11 -8.55 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671695046.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.251 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds