Wall clock time and date at job start Tue Mar 31 2020 18:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34492 * 126.82903 * 2 1 4 4 N 1.36449 * 108.85351 * 179.97438 * 3 2 1 5 5 H 0.96998 * 124.85029 * 180.02562 * 4 3 2 6 6 C 1.34665 * 110.29821 * 0.02562 * 4 3 2 7 7 C 1.36770 * 108.39400 * 359.74904 * 6 4 3 8 8 C 1.47266 * 126.93839 * 180.25136 * 7 6 4 9 9 O 1.21628 * 120.00031 * 180.15148 * 8 7 6 10 10 N 1.34775 * 120.00129 * 0.14788 * 8 7 6 11 11 C 1.46504 * 120.00010 * 180.02562 * 10 8 7 12 12 C 1.52998 * 110.28577 * 59.30076 * 11 10 8 13 13 C 1.54264 * 110.32128 * 297.17433 * 11 10 8 14 14 C 1.54612 * 104.94675 * 241.13104 * 13 11 10 15 15 N 1.48559 * 104.63533 * 23.78096 * 14 13 11 16 16 C 1.46906 * 110.99876 * 200.99960 * 15 14 13 17 17 C 1.50704 * 109.46793 * 285.41897 * 16 15 14 18 18 O 1.21289 * 120.00223 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99600 * 180.02562 * 17 16 15 20 20 C 1.37107 * 119.99766 * 180.02562 * 19 17 16 21 21 H 1.07993 * 119.99669 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99819 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99964 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99644 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47354 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47244 * 119.99917 * 24 22 20 27 27 H 1.48504 * 109.46757 * 239.99709 * 24 22 20 28 28 C 1.48564 * 104.22467 * 320.55364 * 15 14 13 29 29 H 1.08999 * 109.46995 * 90.02751 * 1 2 3 30 30 H 1.08994 * 109.46790 * 210.02438 * 1 2 3 31 31 H 1.08997 * 109.47305 * 330.02879 * 1 2 3 32 32 H 1.07993 * 125.57374 * 359.97438 * 3 2 1 33 33 H 1.07999 * 125.79969 * 179.97438 * 6 4 3 34 34 H 0.96997 * 119.99794 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.47181 * 60.70276 * 12 11 10 36 36 H 1.08997 * 109.46451 * 180.70161 * 12 11 10 37 37 H 1.08999 * 109.47295 * 300.69911 * 12 11 10 38 38 H 1.08996 * 110.32282 * 359.97438 * 13 11 10 39 39 H 1.08999 * 110.32315 * 122.20681 * 13 11 10 40 40 H 1.08997 * 110.36128 * 265.00553 * 14 13 11 41 41 H 1.09000 * 110.52336 * 142.64147 * 14 13 11 42 42 H 1.08994 * 109.47262 * 45.41759 * 16 15 14 43 43 H 1.09000 * 109.46868 * 165.41789 * 16 15 14 44 44 H 0.97001 * 120.00281 * 359.97438 * 19 17 16 45 45 H 0.97005 * 119.99651 * 180.02562 * 23 22 20 46 46 H 1.09000 * 110.41223 * 280.70915 * 28 15 14 47 47 H 1.08992 * 110.41334 * 158.26417 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6111 0.6554 0.0006 5 1 4.3840 1.2415 0.0011 6 6 3.6657 -0.6901 0.0004 7 6 2.3865 -1.1739 0.0054 8 6 1.9751 -2.5880 0.0122 9 8 0.7938 -2.8777 0.0133 10 7 2.9075 -3.5611 0.0170 11 6 2.4983 -4.9678 0.0232 12 6 1.6472 -5.2780 -1.2098 13 6 1.7136 -5.2918 1.3113 14 6 2.5489 -6.3803 2.0239 15 7 3.9285 -6.1946 1.5049 16 6 4.7261 -7.4155 1.6814 17 6 5.1058 -7.5621 3.1324 18 8 4.7476 -6.7311 3.9400 19 7 5.8442 -8.6162 3.5325 20 6 6.1892 -8.7499 4.8527 21 1 5.8695 -8.0103 5.5718 22 6 6.9501 -9.8369 5.2653 23 7 7.3386 -10.7370 4.3902 24 14 7.4206 -10.0186 7.0639 25 1 6.8642 -8.8804 7.8386 26 1 6.8720 -11.2932 7.5928 27 1 8.9003 -10.0264 7.1900 28 6 3.7381 -5.8867 0.0641 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 1.9868 2.1059 -0.0004 33 1 4.5665 -1.2858 0.0004 34 1 3.8496 -3.3300 0.0164 35 1 2.2316 -5.0920 -2.1109 36 1 1.3400 -6.3235 -1.1853 37 1 0.7637 -4.6397 -1.2114 38 1 1.6334 -4.4043 1.9390 39 1 0.7228 -5.6736 1.0651 40 1 2.1768 -7.3722 1.7678 41 1 2.5260 -6.2337 3.1037 42 1 4.1404 -8.2803 1.3699 43 1 5.6291 -7.3505 1.0743 44 1 6.1310 -9.2806 2.8866 45 1 7.8694 -11.4960 4.6784 46 1 3.5520 -6.8014 -0.4988 47 1 4.6101 -5.3664 -0.3320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671695046.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:57 Heat of formation + Delta-G solvation = -44.928251 kcal Electronic energy + Delta-G solvation = -28673.700862 eV Core-core repulsion = 24663.017555 eV Total energy + Delta-G solvation = -4010.683307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.07954 -41.13968 -40.04567 -38.76815 -36.03163 -35.39470 -33.32173 -33.27707 -32.85721 -30.91237 -29.96425 -28.93053 -27.40216 -26.88515 -25.44459 -24.09321 -22.65589 -21.44235 -20.95705 -20.14866 -20.11123 -19.80920 -19.13370 -17.77231 -17.33195 -17.16567 -16.67086 -16.32750 -16.04522 -15.82089 -15.50253 -15.40303 -14.97437 -14.82148 -14.52103 -14.43955 -14.19529 -13.95811 -13.87995 -13.54980 -13.52194 -13.35789 -13.24547 -13.13455 -12.98135 -12.88255 -12.65246 -12.39248 -12.26208 -12.16960 -12.11202 -11.92231 -11.79344 -11.47132 -10.59326 -10.30579 -10.00838 -9.97729 -9.47721 -9.34603 -9.13280 -8.45319 -5.93344 0.87367 1.36611 1.41602 1.54436 1.55588 2.09048 2.28491 2.30836 2.53267 2.67940 2.82463 3.21510 3.37685 3.49934 3.79270 4.04313 4.05431 4.14657 4.21713 4.31014 4.33572 4.43271 4.46971 4.51808 4.55666 4.66195 4.68433 4.74331 4.84689 4.85692 4.91932 4.92928 4.97127 5.12141 5.17373 5.21096 5.35274 5.38177 5.42494 5.71116 5.85773 5.88039 5.92177 6.02060 6.09929 6.63421 6.71953 6.82145 7.15704 7.50826 7.59710 8.16537 8.72389 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018823 B = 0.002264 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.165255 B =12364.354010 C =13068.688864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.152 4.152 3 C -0.014 4.014 4 N -0.535 5.535 5 H 0.436 0.564 6 C 0.064 3.936 7 C -0.269 4.269 8 C 0.585 3.415 9 O -0.578 6.578 10 N -0.706 5.706 11 C 0.180 3.820 12 C -0.149 4.149 13 C -0.110 4.110 14 C 0.040 3.960 15 N -0.502 5.502 16 C 0.046 3.954 17 C 0.443 3.557 18 O -0.617 6.617 19 N -0.576 5.576 20 C -0.329 4.329 21 H 0.076 0.924 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.270 1.270 28 C 0.034 3.966 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.199 0.801 33 H 0.200 0.800 34 H 0.408 0.592 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.117 0.883 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.080 0.920 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.678 19.170 -16.660 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.158 4.158 3 C -0.142 4.142 4 N -0.130 5.130 5 H 0.277 0.723 6 C -0.075 4.075 7 C -0.280 4.280 8 C 0.375 3.625 9 O -0.459 6.459 10 N -0.358 5.358 11 C 0.093 3.907 12 C -0.208 4.208 13 C -0.149 4.149 14 C -0.088 4.088 15 N -0.226 5.226 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.503 6.503 19 N -0.214 5.214 20 C -0.459 4.459 21 H 0.094 0.906 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.197 1.197 27 H -0.195 1.195 28 C -0.093 4.093 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.216 0.784 33 H 0.217 0.783 34 H 0.244 0.756 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.135 0.865 44 H 0.230 0.770 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.226 19.874 -15.817 26.152 hybrid contribution 0.657 -1.110 0.565 1.409 sum -5.569 18.763 -15.252 24.814 Atomic orbital electron populations 1.20081 0.89904 1.01921 1.01508 1.20816 0.95986 0.91449 1.07513 1.21968 0.82464 0.99809 1.09966 1.41546 1.08744 1.06468 1.56228 0.72326 1.22316 0.98378 0.84713 1.02044 1.20506 0.94475 0.92241 1.20745 1.17718 0.85138 0.84903 0.74722 1.90673 1.18708 1.84240 1.52307 1.45861 1.09798 1.04741 1.75412 1.20906 0.94080 0.80850 0.94857 1.22120 1.00245 1.02356 0.96045 1.22599 0.98433 0.97798 0.96049 1.23081 0.88280 0.97680 0.99750 1.65057 1.11834 1.32359 1.13387 1.21944 1.00436 0.92915 0.93207 1.20818 0.82182 0.82533 0.91476 1.90496 1.58972 1.44284 1.56549 1.41935 1.47490 1.22836 1.09186 1.19645 1.31761 1.08722 0.85756 0.90634 1.25995 0.96498 0.94854 1.03971 1.69674 1.37710 1.12882 1.35909 0.84906 0.78238 0.78135 0.77269 1.20025 1.19667 1.19499 1.23520 0.97768 0.99337 0.88704 0.92123 0.93387 0.90631 0.78436 0.78323 0.75561 0.91043 0.90716 0.92168 0.93221 0.90393 0.93291 0.92858 0.90901 0.86477 0.76980 0.91365 0.90227 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 9.98 71.24 0.71 -0.92 16 2 C -0.15 -3.22 6.35 -18.51 -0.12 -3.34 16 3 C -0.01 -0.19 11.82 83.12 0.98 0.80 16 4 N -0.53 -5.30 5.90 -194.55 -1.15 -6.44 16 5 H 0.44 0.99 8.96 -92.71 -0.83 0.15 16 6 C 0.06 0.91 11.40 83.91 0.96 1.86 16 7 C -0.27 -6.10 6.29 -19.04 -0.12 -6.22 16 8 C 0.58 15.90 6.99 86.62 0.61 16.50 16 9 O -0.58 -19.45 12.60 -4.12 -0.05 -19.50 16 10 N -0.71 -15.94 5.08 -422.23 -2.14 -18.09 16 11 C 0.18 4.25 1.01 4.50 0.00 4.26 16 12 C -0.15 -3.16 8.15 71.98 0.59 -2.57 16 13 C -0.11 -3.26 5.54 31.57 0.18 -3.09 16 14 C 0.04 1.35 5.93 86.53 0.51 1.86 16 15 N -0.50 -15.93 4.98 -885.56 -4.41 -20.34 16 16 C 0.05 1.56 5.32 85.56 0.46 2.01 16 17 C 0.44 21.13 7.63 87.66 0.67 21.79 16 18 O -0.62 -34.80 14.80 -3.06 -0.05 -34.84 16 19 N -0.58 -29.61 5.29 -306.98 -1.62 -31.23 16 20 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 21 H 0.08 4.66 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 23 N -0.92 -49.66 13.05 21.66 0.28 -49.37 16 24 Si 0.99 43.32 29.55 68.60 2.03 45.34 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 28 C 0.03 0.75 5.65 86.45 0.49 1.24 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.31 6.84 -2.39 -0.02 1.29 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.20 1.54 7.45 -2.91 -0.02 1.52 16 34 H 0.41 7.13 7.21 -92.71 -0.67 6.47 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.58 6.17 -2.39 -0.01 1.57 16 38 H 0.05 1.73 7.40 -2.39 -0.02 1.71 16 39 H 0.08 2.21 7.71 -2.39 -0.02 2.19 16 40 H 0.05 1.51 7.75 -2.39 -0.02 1.49 16 41 H 0.05 2.23 7.23 -2.39 -0.02 2.21 16 42 H 0.07 2.17 7.77 -2.39 -0.02 2.15 16 43 H 0.12 3.28 8.08 -2.39 -0.02 3.26 16 44 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 45 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 46 H 0.08 1.45 7.72 -2.39 -0.02 1.43 16 47 H 0.11 1.87 7.76 -2.39 -0.02 1.86 16 Total: -1.00 -80.38 381.86 -1.12 -81.51 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: -1.20 Total: 37.07 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 7.19 Total: 15.90 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -9.04 Total: -125.47 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -0.10 Total: -54.34 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -80.38 -1.12 -81.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671695046.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.577 kcal (2) G-P(sol) polarization free energy of solvation -80.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds