Wall clock time and date at job start Tue Mar 31 2020 18:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34130 * 125.98822 * 2 1 4 4 C 1.30497 * 109.25771 * 180.24774 * 3 2 1 5 5 N 1.35047 * 108.69758 * 359.75186 * 4 3 2 6 6 H 0.96997 * 126.39833 * 179.97438 * 5 4 3 7 7 C 1.34664 * 125.99145 * 179.81973 * 2 1 3 8 8 C 1.50701 * 126.58955 * 0.03214 * 7 2 1 9 9 C 1.50693 * 109.47468 * 84.70757 * 8 7 2 10 10 O 1.21282 * 119.99901 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00280 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00477 * 180.02562 * 11 9 8 13 13 C 1.52989 * 109.47323 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.82826 * 59.43042 * 13 12 11 15 15 C 1.54475 * 109.90954 * 180.37540 * 13 12 11 16 16 C 1.55506 * 102.38976 * 140.92038 * 15 13 12 17 17 C 1.53886 * 100.75646 * 327.02971 * 16 15 13 18 18 C 1.52379 * 115.67984 * 263.23393 * 17 16 15 19 19 N 1.47275 * 87.70591 * 218.74780 * 18 17 16 20 20 C 1.36929 * 135.93730 * 206.17955 * 19 18 17 21 21 H 1.08008 * 120.00050 * 7.79720 * 20 19 18 22 22 C 1.38814 * 120.00484 * 187.79880 * 20 19 18 23 23 N 1.31612 * 120.00208 * 195.39028 * 22 20 19 24 24 Si 1.86800 * 119.99390 * 15.38484 * 22 20 19 25 25 H 1.48502 * 109.47257 * 270.00241 * 24 22 20 26 26 H 1.48500 * 109.46659 * 150.00316 * 24 22 20 27 27 H 1.48500 * 109.47327 * 30.00383 * 24 22 20 28 28 C 1.47277 * 88.12670 * 26.43156 * 19 18 17 29 29 O 1.42401 * 106.67177 * 34.97544 * 17 16 15 30 30 H 1.09002 * 109.46916 * 270.18382 * 1 2 3 31 31 H 1.09000 * 109.46687 * 30.17621 * 1 2 3 32 32 H 1.08996 * 109.46904 * 150.17820 * 1 2 3 33 33 H 1.07998 * 125.65168 * 179.77364 * 4 3 2 34 34 H 1.09004 * 109.46916 * 324.70405 * 8 7 2 35 35 H 1.09006 * 109.47144 * 204.70862 * 8 7 2 36 36 H 0.97001 * 119.99627 * 359.97438 * 11 9 8 37 37 H 1.08997 * 109.47118 * 59.99282 * 12 11 9 38 38 H 1.09006 * 109.46890 * 299.99981 * 12 11 9 39 39 H 1.09004 * 110.82244 * 259.14397 * 15 13 12 40 40 H 1.08998 * 110.82295 * 22.49490 * 15 13 12 41 41 H 1.08997 * 111.16284 * 209.15773 * 16 15 13 42 42 H 1.08998 * 111.16024 * 84.89931 * 16 15 13 43 43 H 1.09003 * 113.51316 * 104.03729 * 18 17 16 44 44 H 1.09005 * 113.57184 * 333.46831 * 18 17 16 45 45 H 0.96995 * 120.00419 * 354.90735 * 23 22 20 46 46 H 1.09002 * 113.51029 * 88.27681 * 28 19 18 47 47 H 1.08999 * 113.51414 * 218.85324 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7096 -0.0053 5 7 3.5913 -0.6400 -0.0034 6 1 4.3913 -1.1885 -0.0066 7 6 2.2984 -1.0896 0.0034 8 6 1.8473 -2.5275 0.0073 9 6 1.5725 -2.9716 -1.4063 10 8 1.7272 -2.1966 -2.3263 11 7 1.1537 -4.2296 -1.6481 12 6 0.8871 -4.6616 -3.0223 13 6 0.4290 -6.1213 -3.0183 14 1 -0.4751 -6.2234 -2.4181 15 6 0.1540 -6.5903 -4.4642 16 6 0.7054 -8.0443 -4.4540 17 6 1.8761 -7.9005 -3.4656 18 6 3.2479 -7.6865 -4.0936 19 7 3.7984 -8.5646 -3.0473 20 6 5.0103 -8.7178 -2.4286 21 1 5.8030 -8.0070 -2.6100 22 6 5.2202 -9.7867 -1.5682 23 7 6.2496 -9.7791 -0.7481 24 14 4.0415 -11.2359 -1.5743 25 1 2.9477 -10.9884 -0.6008 26 1 4.7732 -12.4706 -1.1934 27 1 3.4665 -11.4006 -2.9336 28 6 2.4774 -9.2101 -2.9617 29 8 1.4666 -6.9559 -2.4818 30 1 -0.3633 0.0033 1.0277 31 1 -0.3633 0.8884 -0.5166 32 1 -0.3633 -0.8916 -0.5110 33 1 4.4004 1.3689 -0.0101 34 1 0.9379 -2.6213 0.6009 35 1 2.6291 -3.1524 0.4390 36 1 1.0296 -4.8493 -0.9122 37 1 1.7968 -4.5682 -3.6155 38 1 0.1058 -4.0364 -3.4546 39 1 -0.9150 -6.5828 -4.6773 40 1 0.6946 -5.9726 -5.1813 41 1 1.0587 -8.3381 -5.4423 42 1 -0.0409 -8.7454 -4.0805 43 1 3.6006 -6.6572 -4.0276 44 1 3.3364 -8.0991 -5.0987 45 1 6.9023 -9.0632 -0.7956 46 1 2.3537 -10.0410 -3.6563 47 1 2.1820 -9.4628 -1.9434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673542480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:56 Heat of formation + Delta-G solvation = 38.035410 kcal Electronic energy + Delta-G solvation = -28972.014299 eV Core-core repulsion = 24964.928566 eV Total energy + Delta-G solvation = -4007.085733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.23825 -40.41948 -39.44464 -36.93612 -34.52806 -33.22196 -32.92345 -32.41246 -32.09781 -29.98272 -28.82152 -27.09844 -25.88055 -25.47297 -23.83084 -21.86930 -21.60596 -21.18181 -20.62856 -19.66096 -19.34655 -17.97551 -17.45059 -17.25996 -16.75917 -16.00194 -15.74737 -15.58562 -15.17611 -14.66930 -14.49972 -14.16605 -13.89405 -13.71838 -13.44092 -13.39353 -13.16337 -13.06805 -12.92690 -12.89833 -12.70399 -12.33735 -12.25420 -12.01774 -11.80153 -11.65163 -11.41153 -10.87087 -10.72725 -10.44181 -10.20730 -10.11319 -10.06418 -9.86274 -9.76763 -9.29307 -9.12970 -8.96033 -8.71881 -8.33561 -7.19928 -6.31698 -3.22382 1.84007 2.56081 2.88942 3.01474 3.23548 3.38703 3.44064 3.59466 3.81404 4.37294 4.41984 4.56272 4.57955 4.59123 4.71192 4.76934 4.84504 4.88490 4.96581 5.10461 5.13957 5.17969 5.20759 5.30465 5.42655 5.48443 5.52512 5.59412 5.66512 5.78776 5.83933 5.87226 5.91118 6.02903 6.05984 6.12844 6.22458 6.27346 6.34970 6.37533 6.51394 6.63766 7.10341 7.24370 7.40918 7.44462 7.95293 8.15684 8.22355 8.96185 9.49787 10.35654 11.18441 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.002885 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.287101 B = 9704.523872 C =11135.868889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.018 3.982 3 N -0.494 5.494 4 C 0.188 3.812 5 N -0.561 5.561 6 H 0.420 0.580 7 C -0.004 4.004 8 C -0.067 4.067 9 C 0.512 3.488 10 O -0.534 6.534 11 N -0.720 5.720 12 C 0.114 3.886 13 C 0.064 3.936 14 H 0.085 0.915 15 C -0.144 4.144 16 C -0.139 4.139 17 C 0.072 3.928 18 C 0.106 3.894 19 N -0.617 5.617 20 C -0.301 4.301 21 H 0.080 0.920 22 C -0.024 4.024 23 N -0.933 5.933 24 Si 1.063 2.937 25 H -0.293 1.293 26 H -0.295 1.295 27 H -0.283 1.283 28 C 0.108 3.892 29 O -0.332 6.332 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.208 0.792 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.407 0.593 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.047 0.953 44 H 0.044 0.956 45 H 0.260 0.740 46 H 0.059 0.941 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.782 13.030 -1.460 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.112 4.112 3 N -0.214 5.214 4 C -0.096 4.096 5 N -0.164 5.164 6 H 0.258 0.742 7 C -0.120 4.120 8 C -0.109 4.109 9 C 0.297 3.703 10 O -0.410 6.410 11 N -0.372 5.372 12 C -0.010 4.010 13 C 0.005 3.995 14 H 0.103 0.897 15 C -0.182 4.182 16 C -0.177 4.177 17 C 0.031 3.969 18 C -0.021 4.021 19 N -0.344 5.344 20 C -0.427 4.427 21 H 0.097 0.903 22 C -0.223 4.223 23 N -0.575 5.575 24 Si 0.894 3.106 25 H -0.220 1.220 26 H -0.223 1.223 27 H -0.209 1.209 28 C -0.018 4.018 29 O -0.250 6.250 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.224 0.776 34 H 0.135 0.865 35 H 0.122 0.878 36 H 0.241 0.759 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.969 12.987 -1.052 19.846 hybrid contribution 1.280 0.019 -0.752 1.485 sum -13.689 13.007 -1.805 18.969 Atomic orbital electron populations 1.20015 0.87928 1.02707 1.01766 1.20396 0.96310 0.87812 1.06662 1.70154 1.00586 1.30644 1.19987 1.24859 0.97323 0.81882 1.05508 1.43160 1.08085 1.08765 1.56422 0.74229 1.20162 0.84170 0.95324 1.12363 1.20037 1.04251 0.91034 0.95532 1.20457 0.76986 0.81790 0.91032 1.90734 1.51278 1.53076 1.45947 1.45836 1.68644 1.12876 1.09813 1.21773 1.01579 0.93999 0.83601 1.23086 0.91476 0.89543 0.95352 0.89722 1.23063 1.02211 0.97054 0.95869 1.22999 0.97864 0.96277 1.00591 1.23134 0.93093 0.91919 0.88745 1.22727 0.90463 0.96203 0.92712 1.46096 1.07691 1.39904 1.40737 1.20091 0.88804 1.10258 1.23555 0.90257 1.25760 1.01859 1.00010 0.94680 1.70895 1.14477 1.37446 1.34702 0.83769 0.74681 0.76428 0.75694 1.22031 1.22257 1.20924 1.22764 0.85938 0.93081 1.00034 1.88358 1.53711 1.46689 1.36289 0.91517 0.91146 0.91672 0.77588 0.86538 0.87793 0.75864 0.91064 0.90693 0.89957 0.90143 0.89574 0.90112 0.93458 0.93845 0.92940 0.92393 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.14 36.01 0.37 -0.32 16 2 C 0.02 0.23 7.09 -82.85 -0.59 -0.36 16 3 N -0.49 -6.76 11.25 -10.87 -0.12 -6.89 16 4 C 0.19 2.00 13.04 -90.37 -1.18 0.83 16 5 N -0.56 -5.79 6.15 -10.30 -0.06 -5.85 16 6 H 0.42 3.25 8.96 -40.82 -0.37 2.89 16 7 C 0.00 -0.05 5.73 -81.60 -0.47 -0.52 16 8 C -0.07 -0.66 5.81 -29.04 -0.17 -0.82 16 9 C 0.51 6.52 7.82 -10.99 -0.09 6.43 16 10 O -0.53 -8.93 16.03 5.56 0.09 -8.85 16 11 N -0.72 -8.35 5.47 -60.30 -0.33 -8.68 16 12 C 0.11 1.36 5.24 -4.05 -0.02 1.34 16 13 C 0.06 0.73 3.61 -25.96 -0.09 0.64 16 14 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 15 C -0.14 -1.40 6.56 -24.63 -0.16 -1.56 16 16 C -0.14 -1.63 6.49 -24.94 -0.16 -1.80 16 17 C 0.07 1.21 1.56 -90.66 -0.14 1.07 16 18 C 0.11 2.08 8.24 -7.88 -0.06 2.02 16 19 N -0.62 -15.24 3.63 -184.78 -0.67 -15.91 16 20 C -0.30 -8.74 11.03 -15.06 -0.17 -8.91 16 21 H 0.08 2.45 8.06 -52.48 -0.42 2.02 16 22 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 23 N -0.93 -29.47 13.70 55.49 0.76 -28.71 16 24 Si 1.06 26.40 25.51 -169.99 -4.34 22.07 16 25 H -0.29 -6.98 6.97 56.52 0.39 -6.59 16 26 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.28 -6.42 5.64 56.52 0.32 -6.10 16 28 C 0.11 2.23 5.18 -7.73 -0.04 2.19 16 29 O -0.33 -5.46 10.69 -35.23 -0.38 -5.84 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.63 7.89 -51.93 -0.41 0.22 16 33 H 0.21 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.12 0.82 8.04 -51.93 -0.42 0.40 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.41 4.14 8.40 -40.82 -0.34 3.80 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.77 7.85 -51.93 -0.41 0.36 16 41 H 0.09 0.93 7.93 -51.93 -0.41 0.51 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.04 0.79 7.99 -51.93 -0.41 0.38 16 45 H 0.26 8.14 8.73 -40.82 -0.36 7.79 16 46 H 0.06 1.13 6.96 -51.93 -0.36 0.77 16 47 H 0.06 1.30 6.30 -51.93 -0.33 0.97 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -39.05 383.65 -9.69 -48.74 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.35 Total: 4.74 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -3.07 Total: -0.60 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: -0.43 Total: -66.04 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.29 Total: -14.68 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: -4.34 Total: 22.07 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.05 -9.69 -48.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673542480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.777 kcal (2) G-P(sol) polarization free energy of solvation -39.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds