Wall clock time and date at job start Tue Mar 31 2020 18:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34130 * 125.98822 * 2 1 4 4 C 1.30497 * 109.25771 * 180.24774 * 3 2 1 5 5 N 1.35047 * 108.69758 * 359.75186 * 4 3 2 6 6 H 0.96997 * 126.39833 * 179.97438 * 5 4 3 7 7 C 1.34664 * 125.99145 * 179.81973 * 2 1 3 8 8 C 1.50701 * 126.58955 * 0.03214 * 7 2 1 9 9 C 1.50693 * 109.47468 * 84.70757 * 8 7 2 10 10 O 1.21282 * 119.99901 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00280 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00477 * 180.02562 * 11 9 8 13 13 C 1.52989 * 109.47323 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.82826 * 59.43042 * 13 12 11 15 15 C 1.54475 * 109.90954 * 180.37540 * 13 12 11 16 16 C 1.55506 * 102.38976 * 140.92038 * 15 13 12 17 17 C 1.53886 * 100.75646 * 327.02971 * 16 15 13 18 18 C 1.52379 * 115.67984 * 263.23393 * 17 16 15 19 19 N 1.47275 * 87.70591 * 218.74780 * 18 17 16 20 20 C 1.36929 * 135.93730 * 206.17955 * 19 18 17 21 21 H 1.08008 * 120.00050 * 7.79720 * 20 19 18 22 22 C 1.38814 * 120.00484 * 187.79880 * 20 19 18 23 23 N 1.31612 * 120.00208 * 195.39028 * 22 20 19 24 24 Si 1.86800 * 119.99390 * 15.38484 * 22 20 19 25 25 H 1.48502 * 109.47257 * 270.00241 * 24 22 20 26 26 H 1.48500 * 109.46659 * 150.00316 * 24 22 20 27 27 H 1.48500 * 109.47327 * 30.00383 * 24 22 20 28 28 C 1.47277 * 88.12670 * 26.43156 * 19 18 17 29 29 O 1.42401 * 106.67177 * 34.97544 * 17 16 15 30 30 H 1.09002 * 109.46916 * 270.18382 * 1 2 3 31 31 H 1.09000 * 109.46687 * 30.17621 * 1 2 3 32 32 H 1.08996 * 109.46904 * 150.17820 * 1 2 3 33 33 H 1.07998 * 125.65168 * 179.77364 * 4 3 2 34 34 H 1.09004 * 109.46916 * 324.70405 * 8 7 2 35 35 H 1.09006 * 109.47144 * 204.70862 * 8 7 2 36 36 H 0.97001 * 119.99627 * 359.97438 * 11 9 8 37 37 H 1.08997 * 109.47118 * 59.99282 * 12 11 9 38 38 H 1.09006 * 109.46890 * 299.99981 * 12 11 9 39 39 H 1.09004 * 110.82244 * 259.14397 * 15 13 12 40 40 H 1.08998 * 110.82295 * 22.49490 * 15 13 12 41 41 H 1.08997 * 111.16284 * 209.15773 * 16 15 13 42 42 H 1.08998 * 111.16024 * 84.89931 * 16 15 13 43 43 H 1.09003 * 113.51316 * 104.03729 * 18 17 16 44 44 H 1.09005 * 113.57184 * 333.46831 * 18 17 16 45 45 H 0.96995 * 120.00419 * 354.90735 * 23 22 20 46 46 H 1.09002 * 113.51029 * 88.27681 * 28 19 18 47 47 H 1.08999 * 113.51414 * 218.85324 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7096 -0.0053 5 7 3.5913 -0.6400 -0.0034 6 1 4.3913 -1.1885 -0.0066 7 6 2.2984 -1.0896 0.0034 8 6 1.8473 -2.5275 0.0073 9 6 1.5725 -2.9716 -1.4063 10 8 1.7272 -2.1966 -2.3263 11 7 1.1537 -4.2296 -1.6481 12 6 0.8871 -4.6616 -3.0223 13 6 0.4290 -6.1213 -3.0183 14 1 -0.4751 -6.2234 -2.4181 15 6 0.1540 -6.5903 -4.4642 16 6 0.7054 -8.0443 -4.4540 17 6 1.8761 -7.9005 -3.4656 18 6 3.2479 -7.6865 -4.0936 19 7 3.7984 -8.5646 -3.0473 20 6 5.0103 -8.7178 -2.4286 21 1 5.8030 -8.0070 -2.6100 22 6 5.2202 -9.7867 -1.5682 23 7 6.2496 -9.7791 -0.7481 24 14 4.0415 -11.2359 -1.5743 25 1 2.9477 -10.9884 -0.6008 26 1 4.7732 -12.4706 -1.1934 27 1 3.4665 -11.4006 -2.9336 28 6 2.4774 -9.2101 -2.9617 29 8 1.4666 -6.9559 -2.4818 30 1 -0.3633 0.0033 1.0277 31 1 -0.3633 0.8884 -0.5166 32 1 -0.3633 -0.8916 -0.5110 33 1 4.4004 1.3689 -0.0101 34 1 0.9379 -2.6213 0.6009 35 1 2.6291 -3.1524 0.4390 36 1 1.0296 -4.8493 -0.9122 37 1 1.7968 -4.5682 -3.6155 38 1 0.1058 -4.0364 -3.4546 39 1 -0.9150 -6.5828 -4.6773 40 1 0.6946 -5.9726 -5.1813 41 1 1.0587 -8.3381 -5.4423 42 1 -0.0409 -8.7454 -4.0805 43 1 3.6006 -6.6572 -4.0276 44 1 3.3364 -8.0991 -5.0987 45 1 6.9023 -9.0632 -0.7956 46 1 2.3537 -10.0410 -3.6563 47 1 2.1820 -9.4628 -1.9434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673542480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:55 Heat of formation + Delta-G solvation = 7.628187 kcal Electronic energy + Delta-G solvation = -28973.332855 eV Core-core repulsion = 24964.928566 eV Total energy + Delta-G solvation = -4008.404289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.08222 -41.64599 -40.52183 -38.33832 -35.65573 -34.48786 -34.06361 -33.79025 -33.14045 -31.16249 -29.90355 -28.56034 -27.11235 -26.76069 -25.02994 -22.94462 -22.62496 -22.54409 -21.61181 -20.78862 -20.52024 -19.51543 -18.81676 -18.19771 -17.77191 -17.32810 -16.96854 -16.54799 -16.14079 -15.91778 -15.81133 -15.49462 -15.35288 -15.20175 -14.85202 -14.44886 -14.25711 -14.20421 -13.79832 -13.73270 -13.65649 -13.44935 -13.36882 -13.06333 -12.97851 -12.63052 -12.59462 -12.45900 -12.32057 -11.85815 -11.58585 -11.38428 -11.26451 -11.10028 -10.98760 -10.82679 -10.78746 -10.33305 -10.12262 -9.25711 -9.19495 -8.64412 -5.46703 0.98758 1.38774 1.51142 1.57922 1.66478 2.03495 2.19454 2.36316 2.54667 2.68925 3.04843 3.15137 3.44220 3.57854 3.68031 3.75982 3.79375 3.86514 4.00193 4.05456 4.20387 4.36516 4.40427 4.41904 4.48702 4.50422 4.55901 4.59155 4.64761 4.73429 4.82654 4.84969 4.90395 4.95728 4.98750 5.04453 5.06850 5.15979 5.20252 5.22137 5.33686 5.39664 5.79879 5.92982 6.25301 6.47170 6.53732 6.67936 7.09798 7.20179 7.32312 8.27168 8.87207 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.002885 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.287101 B = 9704.523872 C =11135.868889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.009 4.009 3 N -0.534 5.534 4 C 0.190 3.810 5 N -0.560 5.560 6 H 0.430 0.570 7 C -0.018 4.018 8 C -0.061 4.061 9 C 0.511 3.489 10 O -0.579 6.579 11 N -0.714 5.714 12 C 0.116 3.884 13 C 0.062 3.938 14 H 0.114 0.886 15 C -0.136 4.136 16 C -0.129 4.129 17 C 0.090 3.910 18 C 0.101 3.899 19 N -0.653 5.653 20 C -0.292 4.292 21 H 0.039 0.961 22 C -0.085 4.085 23 N -0.969 5.969 24 Si 1.105 2.895 25 H -0.277 1.277 26 H -0.302 1.302 27 H -0.247 1.247 28 C 0.099 3.901 29 O -0.362 6.362 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.242 0.758 34 H 0.147 0.853 35 H 0.117 0.883 36 H 0.415 0.585 37 H 0.040 0.960 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.028 0.972 44 H 0.068 0.932 45 H 0.244 0.756 46 H 0.081 0.919 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.276 12.118 -2.383 22.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.137 4.137 3 N -0.255 5.255 4 C -0.094 4.094 5 N -0.164 5.164 6 H 0.270 0.730 7 C -0.134 4.134 8 C -0.102 4.102 9 C 0.298 3.702 10 O -0.459 6.459 11 N -0.366 5.366 12 C -0.009 4.009 13 C 0.005 3.995 14 H 0.131 0.869 15 C -0.173 4.173 16 C -0.167 4.167 17 C 0.049 3.951 18 C -0.025 4.025 19 N -0.382 5.382 20 C -0.419 4.419 21 H 0.056 0.944 22 C -0.277 4.277 23 N -0.614 5.614 24 Si 0.929 3.071 25 H -0.204 1.204 26 H -0.230 1.230 27 H -0.171 1.171 28 C -0.025 4.025 29 O -0.281 6.281 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.258 0.742 34 H 0.164 0.836 35 H 0.136 0.864 36 H 0.251 0.749 37 H 0.059 0.941 38 H 0.108 0.892 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.047 0.953 44 H 0.085 0.915 45 H 0.053 0.947 46 H 0.098 0.902 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.509 12.082 -2.005 22.194 hybrid contribution 2.423 0.471 -0.512 2.521 sum -16.086 12.553 -2.517 20.559 Atomic orbital electron populations 1.20052 0.86762 1.02530 1.02823 1.20881 0.97528 0.88143 1.07190 1.70139 1.01965 1.31653 1.21759 1.25596 0.97652 0.82440 1.03738 1.43236 1.08262 1.08952 1.55945 0.73038 1.20467 0.84583 0.96017 1.12350 1.20110 1.06038 0.90060 0.93959 1.20943 0.75999 0.81566 0.91736 1.90712 1.53360 1.54309 1.47529 1.45863 1.67895 1.12714 1.10144 1.21772 1.00643 0.95060 0.83382 1.23364 0.90907 0.87984 0.97252 0.86858 1.23108 1.04496 0.95429 0.94315 1.23013 0.95864 0.98119 0.99676 1.22810 0.93528 0.89624 0.89170 1.23005 0.92266 0.94338 0.92888 1.46182 1.07524 1.41852 1.42612 1.19905 0.89875 1.08743 1.23403 0.94353 1.27194 1.03100 1.02843 0.94520 1.71016 1.15819 1.37552 1.37018 0.83303 0.73270 0.72599 0.77944 1.20365 1.23048 1.17110 1.23040 0.83802 0.95627 1.00077 1.88331 1.55271 1.47324 1.37178 0.89783 0.91927 0.91174 0.74157 0.83576 0.86448 0.74915 0.94123 0.89157 0.86249 0.90168 0.88015 0.87855 0.95339 0.91458 0.94725 0.90158 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.29 10.14 71.24 0.72 -0.57 16 2 C -0.01 -0.22 7.09 41.39 0.29 0.07 16 3 N -0.53 -14.65 11.25 -188.32 -2.12 -16.77 16 4 C 0.19 3.94 13.04 180.26 2.35 6.30 16 5 N -0.56 -11.31 6.15 -186.49 -1.15 -12.46 16 6 H 0.43 6.50 8.96 -92.71 -0.83 5.67 16 7 C -0.02 -0.42 5.73 40.95 0.23 -0.18 16 8 C -0.06 -1.11 5.81 29.10 0.17 -0.94 16 9 C 0.51 12.65 7.82 87.65 0.69 13.33 16 10 O -0.58 -19.50 16.03 -3.03 -0.05 -19.55 16 11 N -0.71 -15.61 5.47 -463.08 -2.53 -18.14 16 12 C 0.12 2.55 5.24 86.38 0.45 3.00 16 13 C 0.06 1.21 3.61 31.09 0.11 1.32 16 14 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 15 C -0.14 -1.98 6.56 31.96 0.21 -1.77 16 16 C -0.13 -2.37 6.49 31.76 0.21 -2.16 16 17 C 0.09 2.76 1.56 -10.81 -0.02 2.75 16 18 C 0.10 3.85 8.24 83.47 0.69 4.54 16 19 N -0.65 -32.10 3.63 -739.92 -2.69 -34.78 16 20 C -0.29 -17.51 11.03 84.04 0.93 -16.58 16 21 H 0.04 2.53 8.06 -2.91 -0.02 2.51 16 22 C -0.09 -5.17 5.50 84.86 0.47 -4.70 16 23 N -0.97 -63.62 13.70 21.65 0.30 -63.32 16 24 Si 1.10 52.80 25.51 68.60 1.75 54.55 16 25 H -0.28 -12.44 6.97 99.48 0.69 -11.74 16 26 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 27 H -0.25 -10.19 5.64 99.48 0.56 -9.63 16 28 C 0.10 3.83 5.18 83.57 0.43 4.26 16 29 O -0.36 -11.07 10.69 -148.98 -1.59 -12.66 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.29 7.89 -2.39 -0.02 1.27 16 33 H 0.24 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.15 1.74 8.04 -2.38 -0.02 1.72 16 35 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.41 7.68 8.40 -92.71 -0.78 6.90 16 37 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.08 1.21 7.85 -2.39 -0.02 1.19 16 41 H 0.10 1.62 7.93 -2.39 -0.02 1.60 16 42 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 2.28 7.99 -2.38 -0.02 2.26 16 45 H 0.24 16.16 8.73 -92.71 -0.81 15.35 16 46 H 0.08 2.77 6.96 -2.39 -0.02 2.76 16 47 H 0.05 1.95 6.30 -2.39 -0.02 1.93 16 Total: -1.00 -90.50 383.65 -0.95 -91.45 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -0.81 Total: 23.03 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 7.93 Total: 8.66 kcal Atomic # 7 Polarization: -137.29 SS G_CDS: -8.19 Total: -145.48 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.64 Total: -32.21 kcal Atomic # 14 Polarization: 52.80 SS G_CDS: 1.75 Total: 54.55 kcal Total: -90.50 -0.95 -91.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673542480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.079 kcal (2) G-P(sol) polarization free energy of solvation -90.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds