Wall clock time and date at job start Tue Mar 31 2020 18:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39830 * 126.45742 * 2 1 4 4 C 1.35458 * 107.86266 * 180.30470 * 3 2 1 5 5 N 1.35528 * 108.87041 * 359.73859 * 4 3 2 6 6 H 0.97003 * 125.67759 * 179.97438 * 5 4 3 7 7 C 1.37650 * 108.64802 * 0.02562 * 5 4 3 8 8 C 1.46676 * 126.23773 * 179.97438 * 7 5 4 9 9 O 1.21695 * 120.00298 * 180.02562 * 8 7 5 10 10 N 1.34774 * 119.99656 * 0.02919 * 8 7 5 11 11 C 1.46506 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 H 1.08998 * 112.85254 * 43.80385 * 12 11 10 14 14 C 1.53781 * 113.61399 * 174.99933 * 12 11 10 15 15 C 1.53785 * 87.08078 * 139.97945 * 14 12 11 16 16 H 1.09004 * 113.61397 * 220.02153 * 15 14 12 17 17 N 1.46900 * 113.61396 * 89.11596 * 15 14 12 18 18 C 1.46899 * 110.99841 * 155.00208 * 17 15 14 19 19 C 1.50699 * 109.47039 * 180.02562 * 18 17 15 20 20 O 1.21294 * 119.99918 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00015 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99958 * 179.97438 * 21 19 18 23 23 H 1.08002 * 120.00228 * 0.02562 * 22 21 19 24 24 C 1.38948 * 120.00026 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00071 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00190 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.46965 * 59.99783 * 26 24 22 28 28 H 1.48496 * 109.47010 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.46786 * 300.00379 * 26 24 22 30 30 C 1.53785 * 113.61053 * 272.49703 * 12 11 10 31 31 H 1.08994 * 109.47062 * 270.13602 * 1 2 3 32 32 H 1.09003 * 109.46914 * 30.13819 * 1 2 3 33 33 H 1.08997 * 109.46982 * 150.13541 * 1 2 3 34 34 H 1.08002 * 126.07280 * 0.06806 * 3 2 1 35 35 H 1.07997 * 125.56123 * 179.70610 * 4 3 2 36 36 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 38 38 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 39 39 H 1.08996 * 113.61569 * 254.53055 * 14 12 11 40 40 H 1.09002 * 113.61354 * 25.43545 * 14 12 11 41 41 H 1.00897 * 110.99653 * 31.04833 * 17 15 14 42 42 H 1.09001 * 109.46697 * 299.99910 * 18 17 15 43 43 H 1.08992 * 109.47503 * 59.99836 * 18 17 15 44 44 H 0.96999 * 119.99914 * 359.97438 * 21 19 18 45 45 H 0.96998 * 120.00333 * 180.02562 * 25 24 22 46 46 H 1.08995 * 113.61917 * 334.56530 * 30 12 11 47 47 H 1.08995 * 113.61487 * 105.47453 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6218 0.6927 -0.0069 5 7 3.6284 -0.6625 -0.0053 6 1 4.4190 -1.2245 -0.0095 7 6 2.3263 -1.1090 0.0021 8 6 1.8898 -2.5093 0.0055 9 8 0.7026 -2.7766 0.0117 10 7 2.8036 -3.4999 0.0019 11 6 2.3677 -4.8986 0.0058 12 6 3.5931 -5.8147 0.0011 13 1 4.3695 -5.4867 0.6922 14 6 3.2466 -7.3076 0.1276 15 6 4.3519 -7.5713 -0.9086 16 1 4.0914 -8.3367 -1.6397 17 7 5.6792 -7.7768 -0.3138 18 6 6.5354 -8.5762 -1.2004 19 6 7.8852 -8.7661 -0.5579 20 8 8.1119 -8.2827 0.5312 21 7 8.8405 -9.4732 -1.1934 22 6 10.0687 -9.6455 -0.6091 23 1 10.2706 -9.2151 0.3606 24 6 11.0535 -10.3749 -1.2640 25 7 10.8077 -10.8991 -2.4437 26 14 12.7268 -10.6104 -0.4676 27 1 12.5628 -11.3135 0.8300 28 1 13.5920 -11.4190 -1.3636 29 1 13.3558 -9.2852 -0.2364 30 6 4.1163 -6.1362 -1.4088 31 1 -0.3633 0.0024 1.0276 32 1 -0.3633 0.8888 -0.5160 33 1 -0.3633 -0.8912 -0.5117 34 1 2.0137 2.1549 0.0010 35 1 4.4972 1.3251 -0.0131 36 1 3.7499 -3.2869 -0.0034 37 1 1.7737 -5.0915 0.8992 38 1 1.7643 -5.0937 -0.8808 39 1 3.4621 -7.7241 1.1115 40 1 2.2465 -7.5554 -0.2282 41 1 5.6049 -8.2028 0.5978 42 1 6.0741 -9.5490 -1.3704 43 1 6.6553 -8.0595 -2.1525 44 1 8.6591 -9.8601 -2.0642 45 1 11.4950 -11.4086 -2.9008 46 1 3.3541 -6.0638 -2.1845 47 1 5.0341 -5.6071 -1.6651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691778939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:01 Heat of formation + Delta-G solvation = -12.416655 kcal Electronic energy + Delta-G solvation = -27197.652682 eV Core-core repulsion = 23188.379184 eV Total energy + Delta-G solvation = -4009.273499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.64061 -39.88343 -38.93419 -38.05425 -35.18552 -34.09021 -33.23917 -32.66840 -31.24548 -30.30941 -28.33497 -27.00906 -26.21474 -25.73284 -24.01658 -22.79767 -22.03023 -20.92388 -19.74775 -19.28963 -19.07699 -18.69573 -17.93180 -16.35586 -16.16122 -16.12887 -15.78307 -15.32018 -15.02126 -14.92476 -14.54569 -14.28344 -14.11288 -13.98179 -13.83014 -13.47901 -13.38377 -13.22460 -12.89381 -12.56253 -12.53336 -12.50468 -12.27571 -11.85765 -11.70708 -11.58022 -11.54805 -11.07488 -10.95735 -10.67703 -10.47636 -10.32121 -10.24819 -10.10493 -9.54052 -9.38229 -9.09827 -8.48905 -8.45793 -8.12519 -8.00151 -6.45417 -3.86559 1.17376 2.42358 2.75456 2.89425 3.13091 3.16879 3.22965 3.27084 3.86324 4.00534 4.22965 4.42243 4.45908 4.64798 4.67818 4.70442 4.73853 4.89301 5.01197 5.15113 5.15354 5.22031 5.40633 5.47802 5.49377 5.56175 5.60840 5.62734 5.65479 5.68482 5.80394 5.85612 5.89569 5.99216 6.04229 6.13158 6.15441 6.24879 6.31204 6.41250 6.64329 7.01962 7.21092 7.24164 7.51143 7.60492 7.92515 8.01957 8.56995 9.13700 9.50065 10.01305 10.72122 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.001729 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.559360 B =16193.593171 C =17298.697889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.074 4.074 3 C -0.214 4.214 4 C 0.028 3.972 5 N -0.540 5.540 6 H 0.417 0.583 7 C -0.063 4.063 8 C 0.588 3.412 9 O -0.530 6.530 10 N -0.728 5.728 11 C 0.130 3.870 12 C -0.116 4.116 13 H 0.102 0.898 14 C -0.134 4.134 15 C 0.061 3.939 16 H 0.059 0.941 17 N -0.650 5.650 18 C 0.052 3.948 19 C 0.440 3.560 20 O -0.585 6.585 21 N -0.563 5.563 22 C -0.301 4.301 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.274 1.274 30 C -0.128 4.128 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.172 0.828 36 H 0.396 0.604 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.352 0.648 42 H 0.044 0.956 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.080 0.920 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.715 17.635 1.028 25.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.238 4.238 4 C -0.108 4.108 5 N -0.137 5.137 6 H 0.255 0.745 7 C -0.175 4.175 8 C 0.376 3.624 9 O -0.407 6.407 10 N -0.379 5.379 11 C 0.007 3.993 12 C -0.134 4.134 13 H 0.121 0.879 14 C -0.172 4.172 15 C -0.050 4.050 16 H 0.077 0.923 17 N -0.284 5.284 18 C -0.081 4.081 19 C 0.225 3.775 20 O -0.469 6.469 21 N -0.199 5.199 22 C -0.431 4.431 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.199 1.199 30 C -0.166 4.166 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.160 0.840 35 H 0.189 0.811 36 H 0.229 0.771 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.172 0.828 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.935 18.059 1.420 25.491 hybrid contribution 1.478 -1.373 -0.175 2.025 sum -16.457 16.687 1.245 23.470 Atomic orbital electron populations 1.20344 0.89310 1.02865 1.02202 1.19977 0.95917 0.90809 1.01617 1.20820 0.91847 0.98839 1.12330 1.22043 0.99639 0.82963 1.06199 1.41981 1.07208 1.07371 1.57094 0.74528 1.20241 0.83798 0.93572 1.19909 1.17058 0.85871 0.83052 0.76465 1.90809 1.16020 1.83335 1.50528 1.45919 1.09368 1.06678 1.75952 1.21476 0.96693 0.78798 1.02304 1.22726 0.96875 0.94526 0.99302 0.87938 1.23191 0.98895 0.95231 0.99932 1.22549 0.88715 0.96952 0.96756 0.92308 1.59951 1.09487 1.53283 1.05650 1.21718 0.93452 0.95921 0.96987 1.19808 0.86038 0.84104 0.87531 1.90518 1.81533 1.52932 1.21954 1.41858 1.11714 1.46537 1.19795 1.19654 0.88138 1.31209 1.04083 0.87978 1.25266 1.00126 0.96652 0.95842 1.69599 1.35487 1.35346 1.13802 0.85912 0.81080 0.78488 0.78702 1.19905 1.20947 1.19893 1.23121 1.01169 0.96926 0.95407 0.91556 0.92030 0.90182 0.83959 0.81119 0.77076 0.91323 0.91214 0.90764 0.89414 0.82772 0.93771 0.89645 0.77445 0.91784 0.90178 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 9.83 36.01 0.35 -0.49 16 2 C -0.07 -0.76 6.21 -104.16 -0.65 -1.40 16 3 C -0.21 -1.73 10.76 -39.98 -0.43 -2.16 16 4 C 0.03 0.18 11.89 -16.91 -0.20 -0.02 16 5 N -0.54 -3.82 5.99 -9.39 -0.06 -3.87 16 6 H 0.42 1.87 8.19 -40.82 -0.33 1.53 16 7 C -0.06 -0.64 7.06 -81.98 -0.58 -1.21 16 8 C 0.59 6.68 7.79 -12.86 -0.10 6.58 16 9 O -0.53 -7.60 14.80 5.19 0.08 -7.53 16 10 N -0.73 -6.55 5.55 -61.61 -0.34 -6.89 16 11 C 0.13 1.19 5.51 -4.04 -0.02 1.17 16 12 C -0.12 -1.06 3.67 -89.81 -0.33 -1.39 16 13 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 14 C -0.13 -1.24 7.32 -25.92 -0.19 -1.43 16 15 C 0.06 0.69 4.22 -66.89 -0.28 0.41 16 16 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16 17 N -0.65 -9.79 6.08 -107.13 -0.65 -10.44 16 18 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 19 C 0.44 10.15 7.82 -10.99 -0.09 10.06 16 20 O -0.58 -15.54 15.78 5.55 0.09 -15.45 16 21 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 22 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 23 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 26 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 30 C -0.13 -1.28 7.43 -25.91 -0.19 -1.47 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.88 6.49 -51.93 -0.34 0.55 16 34 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 36 H 0.40 2.75 7.60 -40.82 -0.31 2.44 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 39 H 0.07 0.71 7.91 -51.93 -0.41 0.30 16 40 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.35 5.52 8.08 -39.29 -0.32 5.20 16 42 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.08 0.72 7.90 -51.93 -0.41 0.31 16 47 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 394.55 15.07 5.95 5.95 Total: -1.00 -33.77 394.55 -9.27 -43.04 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -6.99 Total: 15.50 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.98 Total: 1.54 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.38 Total: -58.83 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: 0.16 Total: -22.97 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.77 -9.27 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691778939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.623 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds