Wall clock time and date at job start Tue Mar 31 2020 18:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39830 * 126.45742 * 2 1 4 4 C 1.35458 * 107.86266 * 180.30470 * 3 2 1 5 5 N 1.35528 * 108.87041 * 359.73859 * 4 3 2 6 6 H 0.97003 * 125.67759 * 179.97438 * 5 4 3 7 7 C 1.37650 * 108.64802 * 0.02562 * 5 4 3 8 8 C 1.46676 * 126.23773 * 179.97438 * 7 5 4 9 9 O 1.21695 * 120.00298 * 180.02562 * 8 7 5 10 10 N 1.34774 * 119.99656 * 0.02919 * 8 7 5 11 11 C 1.46506 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 H 1.08998 * 112.85254 * 43.80385 * 12 11 10 14 14 C 1.53781 * 113.61399 * 174.99933 * 12 11 10 15 15 C 1.53785 * 87.08078 * 139.97945 * 14 12 11 16 16 H 1.09004 * 113.61397 * 220.02153 * 15 14 12 17 17 N 1.46900 * 113.61396 * 89.11596 * 15 14 12 18 18 C 1.46899 * 110.99841 * 155.00208 * 17 15 14 19 19 C 1.50699 * 109.47039 * 180.02562 * 18 17 15 20 20 O 1.21294 * 119.99918 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00015 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99958 * 179.97438 * 21 19 18 23 23 H 1.08002 * 120.00228 * 0.02562 * 22 21 19 24 24 C 1.38948 * 120.00026 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00071 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00190 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.46965 * 59.99783 * 26 24 22 28 28 H 1.48496 * 109.47010 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.46786 * 300.00379 * 26 24 22 30 30 C 1.53785 * 113.61053 * 272.49703 * 12 11 10 31 31 H 1.08994 * 109.47062 * 270.13602 * 1 2 3 32 32 H 1.09003 * 109.46914 * 30.13819 * 1 2 3 33 33 H 1.08997 * 109.46982 * 150.13541 * 1 2 3 34 34 H 1.08002 * 126.07280 * 0.06806 * 3 2 1 35 35 H 1.07997 * 125.56123 * 179.70610 * 4 3 2 36 36 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 38 38 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 39 39 H 1.08996 * 113.61569 * 254.53055 * 14 12 11 40 40 H 1.09002 * 113.61354 * 25.43545 * 14 12 11 41 41 H 1.00897 * 110.99653 * 31.04833 * 17 15 14 42 42 H 1.09001 * 109.46697 * 299.99910 * 18 17 15 43 43 H 1.08992 * 109.47503 * 59.99836 * 18 17 15 44 44 H 0.96999 * 119.99914 * 359.97438 * 21 19 18 45 45 H 0.96998 * 120.00333 * 180.02562 * 25 24 22 46 46 H 1.08995 * 113.61917 * 334.56530 * 30 12 11 47 47 H 1.08995 * 113.61487 * 105.47453 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6218 0.6927 -0.0069 5 7 3.6284 -0.6625 -0.0053 6 1 4.4190 -1.2245 -0.0095 7 6 2.3263 -1.1090 0.0021 8 6 1.8898 -2.5093 0.0055 9 8 0.7026 -2.7766 0.0117 10 7 2.8036 -3.4999 0.0019 11 6 2.3677 -4.8986 0.0058 12 6 3.5931 -5.8147 0.0011 13 1 4.3695 -5.4867 0.6922 14 6 3.2466 -7.3076 0.1276 15 6 4.3519 -7.5713 -0.9086 16 1 4.0914 -8.3367 -1.6397 17 7 5.6792 -7.7768 -0.3138 18 6 6.5354 -8.5762 -1.2004 19 6 7.8852 -8.7661 -0.5579 20 8 8.1119 -8.2827 0.5312 21 7 8.8405 -9.4732 -1.1934 22 6 10.0687 -9.6455 -0.6091 23 1 10.2706 -9.2151 0.3606 24 6 11.0535 -10.3749 -1.2640 25 7 10.8077 -10.8991 -2.4437 26 14 12.7268 -10.6104 -0.4676 27 1 12.5628 -11.3135 0.8300 28 1 13.5920 -11.4190 -1.3636 29 1 13.3558 -9.2852 -0.2364 30 6 4.1163 -6.1362 -1.4088 31 1 -0.3633 0.0024 1.0276 32 1 -0.3633 0.8888 -0.5160 33 1 -0.3633 -0.8912 -0.5117 34 1 2.0137 2.1549 0.0010 35 1 4.4972 1.3251 -0.0131 36 1 3.7499 -3.2869 -0.0034 37 1 1.7737 -5.0915 0.8992 38 1 1.7643 -5.0937 -0.8808 39 1 3.4621 -7.7241 1.1115 40 1 2.2465 -7.5554 -0.2282 41 1 5.6049 -8.2028 0.5978 42 1 6.0741 -9.5490 -1.3704 43 1 6.6553 -8.0595 -2.1525 44 1 8.6591 -9.8601 -2.0642 45 1 11.4950 -11.4086 -2.9008 46 1 3.3541 -6.0638 -2.1845 47 1 5.0341 -5.6071 -1.6651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691778939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:00 Heat of formation + Delta-G solvation = -37.911150 kcal Electronic energy + Delta-G solvation = -27198.758206 eV Core-core repulsion = 23188.379184 eV Total energy + Delta-G solvation = -4010.379023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.28013 -40.77971 -40.09544 -39.55116 -36.25498 -35.85712 -34.44304 -33.39187 -33.23152 -31.00475 -29.25610 -28.08022 -27.34578 -26.62735 -25.64628 -23.61981 -22.80221 -21.55874 -21.11342 -20.51707 -19.91931 -19.83222 -19.42232 -17.71649 -17.18465 -16.91371 -16.85909 -16.55272 -16.38316 -16.07734 -15.84093 -15.46165 -15.18457 -15.06860 -14.81916 -14.56756 -14.39652 -13.99709 -13.87508 -13.59229 -13.58858 -13.41539 -13.23117 -13.17659 -13.13466 -12.85479 -12.54570 -12.47294 -12.43635 -12.13439 -11.77808 -11.58977 -11.50388 -11.14692 -10.98097 -10.33104 -10.19822 -10.02660 -9.70185 -9.30845 -9.11142 -8.47337 -5.96341 0.45804 1.39266 1.41463 1.52272 1.83007 2.04377 2.08227 2.27348 2.28270 2.33486 2.88135 3.19970 3.46542 3.61784 3.69385 3.85521 3.95477 3.97773 4.25285 4.26586 4.28133 4.37358 4.40175 4.45728 4.55572 4.63931 4.71064 4.81928 4.86834 4.87815 4.89241 4.94153 5.00889 5.14905 5.18718 5.26067 5.36030 5.40059 5.44711 5.49918 5.77375 5.92124 5.98660 6.14346 6.42128 6.44214 6.59070 6.60974 7.11503 7.12440 7.55324 8.10289 8.69673 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.001729 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.559360 B =16193.593171 C =17298.697889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.096 4.096 3 C -0.231 4.231 4 C 0.046 3.954 5 N -0.531 5.531 6 H 0.429 0.571 7 C -0.091 4.091 8 C 0.584 3.416 9 O -0.569 6.569 10 N -0.718 5.718 11 C 0.136 3.864 12 C -0.104 4.104 13 H 0.092 0.908 14 C -0.125 4.125 15 C 0.053 3.947 16 H 0.069 0.931 17 N -0.661 5.661 18 C 0.067 3.933 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.336 4.336 23 H 0.079 0.921 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.272 1.272 30 C -0.122 4.122 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.159 0.841 35 H 0.210 0.790 36 H 0.406 0.594 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.346 0.654 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.096 0.904 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.273 18.388 0.522 25.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.255 4.255 4 C -0.091 4.091 5 N -0.128 5.128 6 H 0.269 0.731 7 C -0.203 4.203 8 C 0.373 3.627 9 O -0.449 6.449 10 N -0.369 5.369 11 C 0.013 3.987 12 C -0.123 4.123 13 H 0.111 0.889 14 C -0.164 4.164 15 C -0.057 4.057 16 H 0.087 0.913 17 N -0.295 5.295 18 C -0.065 4.065 19 C 0.225 3.775 20 O -0.510 6.510 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.097 0.903 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.197 1.197 30 C -0.160 4.160 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.177 0.823 35 H 0.227 0.773 36 H 0.241 0.759 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.166 0.834 42 H 0.084 0.916 43 H 0.119 0.881 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.114 0.886 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.477 18.796 0.889 25.681 hybrid contribution 1.317 -1.537 -0.013 2.024 sum -16.161 17.259 0.876 23.660 Atomic orbital electron populations 1.20294 0.89566 1.02567 1.02007 1.20302 0.96341 0.91910 1.02005 1.21114 0.92249 0.99155 1.12965 1.22687 1.00443 0.82774 1.03233 1.41997 1.06631 1.07927 1.56284 0.73141 1.20118 0.85216 0.92941 1.22050 1.17299 0.85562 0.83918 0.75925 1.90780 1.17553 1.84004 1.52584 1.45837 1.09695 1.06352 1.75043 1.21402 0.96529 0.78783 1.01992 1.22578 0.96401 0.94635 0.98682 0.88941 1.23189 0.99082 0.94770 0.99317 1.22654 0.87397 0.97931 0.97678 0.91289 1.59947 1.11454 1.52766 1.05297 1.21562 0.90219 0.97685 0.97057 1.20880 0.87617 0.82111 0.86893 1.90486 1.82696 1.54008 1.23791 1.41934 1.11637 1.47348 1.20080 1.19637 0.90029 1.32847 1.04010 0.90269 1.26039 1.03152 0.95772 0.96268 1.69661 1.36626 1.35306 1.14450 0.84991 0.76892 0.78476 0.77994 1.19702 1.19527 1.19711 1.23111 1.01046 0.95748 0.96089 0.91727 0.90353 0.92341 0.82311 0.77342 0.75857 0.91895 0.91299 0.90974 0.87453 0.83419 0.91632 0.88079 0.76993 0.91290 0.88609 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 9.83 71.24 0.70 -0.99 16 2 C -0.10 -1.94 6.21 -19.56 -0.12 -2.06 16 3 C -0.23 -3.35 10.76 22.01 0.24 -3.11 16 4 C 0.05 0.48 11.89 83.48 0.99 1.47 16 5 N -0.53 -6.62 5.99 -183.62 -1.10 -7.72 16 6 H 0.43 3.03 8.19 -92.71 -0.76 2.27 16 7 C -0.09 -1.81 7.06 40.35 0.28 -1.52 16 8 C 0.58 13.42 7.79 86.45 0.67 14.09 16 9 O -0.57 -16.94 14.80 -4.33 -0.06 -17.01 16 10 N -0.72 -12.56 5.55 -467.07 -2.59 -15.15 16 11 C 0.14 2.37 5.51 86.38 0.48 2.85 16 12 C -0.10 -1.77 3.67 -10.27 -0.04 -1.81 16 13 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 14 C -0.13 -2.08 7.32 31.12 0.23 -1.85 16 15 C 0.05 1.10 4.22 45.45 0.19 1.29 16 16 H 0.07 1.33 7.87 -2.39 -0.02 1.31 16 17 N -0.66 -19.18 6.08 -492.84 -2.99 -22.18 16 18 C 0.07 2.20 6.01 85.56 0.51 2.71 16 19 C 0.44 20.29 7.82 87.66 0.69 20.97 16 20 O -0.62 -33.70 15.78 -3.07 -0.05 -33.74 16 21 N -0.57 -28.92 5.29 -306.98 -1.62 -30.54 16 22 C -0.34 -18.84 9.68 84.04 0.81 -18.02 16 23 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 25 N -0.92 -49.05 13.05 21.66 0.28 -48.77 16 26 Si 0.99 42.32 29.55 68.60 2.03 44.35 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 29 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 30 C -0.12 -2.21 7.43 31.12 0.23 -1.98 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.38 6.49 -2.39 -0.02 1.36 16 34 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.21 0.48 8.06 -2.91 -0.02 0.46 16 36 H 0.41 5.28 7.60 -92.71 -0.70 4.57 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.25 7.85 -2.38 -0.02 1.23 16 39 H 0.07 1.27 7.91 -2.39 -0.02 1.25 16 40 H 0.11 1.41 8.10 -2.39 -0.02 1.39 16 41 H 0.35 10.66 8.08 -89.70 -0.73 9.93 16 42 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 43 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 44 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 45 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 46 H 0.10 1.47 7.90 -2.39 -0.02 1.46 16 47 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -74.43 394.55 -1.66 -76.10 By element: Atomic # 1 Polarization: 44.70 SS G_CDS: -1.88 Total: 42.82 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 6.34 Total: 11.85 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -8.03 Total: -124.36 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -0.11 Total: -50.75 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -74.43 -1.66 -76.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691778939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.186 kcal (2) G-P(sol) polarization free energy of solvation -74.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds