Wall clock time and date at job start Tue Mar 31 2020 18:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34489 * 126.83454 * 2 1 4 4 N 1.36448 * 108.85995 * 179.97438 * 3 2 1 5 5 H 0.96998 * 124.85216 * 180.02562 * 4 3 2 6 6 C 1.34657 * 110.29486 * 359.75251 * 4 3 2 7 7 C 1.36774 * 108.39778 * 0.40800 * 6 4 3 8 8 C 1.47258 * 126.94138 * 179.87590 * 7 6 4 9 9 O 1.21632 * 120.00025 * 188.31490 * 8 7 6 10 10 N 1.34778 * 120.00255 * 8.30520 * 8 7 6 11 11 C 1.47430 * 125.64499 * 358.54695 * 10 8 7 12 12 C 1.54912 * 104.82666 * 155.90551 * 11 10 8 13 13 C 1.55156 * 101.58441 * 37.01268 * 12 11 10 14 14 H 1.09003 * 110.87172 * 82.92974 * 13 12 11 15 15 N 1.46899 * 110.72176 * 206.13231 * 13 12 11 16 16 C 1.46906 * 110.99882 * 268.52334 * 15 13 12 17 17 C 1.50702 * 109.46731 * 179.97438 * 16 15 13 18 18 O 1.21285 * 120.00245 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99749 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99871 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00174 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99905 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00006 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99979 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47435 * 269.99875 * 24 22 20 26 26 H 1.48498 * 109.47226 * 30.00011 * 24 22 20 27 27 H 1.48500 * 109.47194 * 149.99590 * 24 22 20 28 28 C 1.47019 * 125.65087 * 178.59116 * 10 8 7 29 29 H 1.08999 * 109.88577 * 61.60465 * 28 10 8 30 30 C 1.53001 * 110.00961 * 300.51096 * 28 10 8 31 31 H 1.08999 * 109.47100 * 270.02349 * 1 2 3 32 32 H 1.08995 * 109.47146 * 30.02317 * 1 2 3 33 33 H 1.08997 * 109.47076 * 150.02544 * 1 2 3 34 34 H 1.08006 * 125.57027 * 359.96185 * 3 2 1 35 35 H 1.07999 * 125.79931 * 180.29414 * 6 4 3 36 36 H 1.09000 * 110.36629 * 274.74426 * 11 10 8 37 37 H 1.08997 * 110.36833 * 36.96280 * 11 10 8 38 38 H 1.08994 * 111.00739 * 278.92978 * 12 11 10 39 39 H 1.09002 * 110.99895 * 155.08227 * 12 11 10 40 40 H 1.00899 * 110.99553 * 32.47368 * 15 13 12 41 41 H 1.08998 * 109.46984 * 59.99588 * 16 15 13 42 42 H 1.08997 * 109.46777 * 299.99319 * 16 15 13 43 43 H 0.97000 * 120.00176 * 359.97438 * 19 17 16 44 44 H 0.96999 * 120.00034 * 180.02562 * 23 22 20 45 45 H 1.08997 * 109.47576 * 302.11636 * 30 28 10 46 46 H 1.09011 * 109.47134 * 62.11808 * 30 28 10 47 47 H 1.08999 * 109.47409 * 182.11057 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 0.0006 5 1 4.3840 1.2414 0.0011 6 6 3.6656 -0.6901 0.0064 7 6 2.3864 -1.1740 0.0005 8 6 1.9750 -2.5880 0.0012 9 8 0.8051 -2.8811 -0.1568 10 7 2.8947 -3.5574 0.1768 11 6 4.3437 -3.3461 0.3481 12 6 4.8409 -4.6031 1.1047 13 6 3.9656 -5.7156 0.4696 14 1 4.3950 -6.0574 -0.4722 15 7 3.7976 -6.8396 1.4003 16 6 4.8427 -7.8519 1.1973 17 6 4.6383 -8.9865 2.1680 18 8 3.7134 -8.9547 2.9520 19 7 5.4839 -10.0360 2.1655 20 6 5.2977 -11.0683 3.0481 21 1 4.4737 -11.0404 3.7457 22 6 6.1698 -12.1501 3.0460 23 7 7.1728 -12.1838 2.1975 24 14 5.9165 -13.5564 4.2491 25 1 6.6620 -13.2759 5.5025 26 1 4.4695 -13.6927 4.5537 27 1 6.4167 -14.8186 3.6476 28 6 2.6194 -5.0006 0.2283 29 1 2.1890 -5.3299 -0.7175 30 6 1.6538 -5.3088 1.3744 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8897 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.9867 2.1059 -0.0006 35 1 4.5664 -1.2859 0.0126 36 1 4.8332 -3.2693 -0.6228 37 1 4.5291 -2.4483 0.9377 38 1 4.6484 -4.5171 2.1741 39 1 5.8990 -4.7813 0.9130 40 1 3.7862 -6.5185 2.3567 41 1 5.8213 -7.4024 1.3651 42 1 4.7873 -8.2317 0.1772 43 1 6.2238 -10.0612 1.5388 44 1 7.7814 -12.9391 2.1958 45 1 2.0824 -4.9608 2.3142 46 1 0.7057 -4.8009 1.1973 47 1 1.4852 -6.3844 1.4282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700856650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:45 Heat of formation + Delta-G solvation = -7.046084 kcal Electronic energy + Delta-G solvation = -28442.324438 eV Core-core repulsion = 24433.283825 eV Total energy + Delta-G solvation = -4009.040613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55469 -40.02788 -38.33149 -37.50865 -34.75460 -33.80474 -32.66670 -31.69689 -31.21119 -30.82288 -29.31143 -26.89212 -26.60870 -25.18558 -24.16683 -23.62962 -21.95930 -20.76996 -19.51513 -19.26101 -18.98664 -18.06656 -17.88233 -16.74540 -16.15682 -15.92006 -15.43615 -15.21088 -14.86370 -14.53433 -14.27753 -14.21728 -13.90405 -13.63476 -13.60778 -13.38196 -13.11758 -12.88152 -12.78723 -12.69804 -12.46407 -12.22755 -12.15487 -12.11432 -11.62340 -11.52341 -11.46594 -11.25675 -11.03828 -10.81010 -10.69655 -10.39253 -10.21889 -9.72482 -9.51127 -8.94087 -8.61590 -8.56540 -8.46650 -8.05541 -7.95963 -6.42098 -3.82709 1.54277 2.13691 2.78288 3.02810 3.17862 3.26729 3.33028 3.46163 3.90353 4.05349 4.23735 4.35320 4.44708 4.53829 4.70244 4.86081 4.87269 5.06496 5.11879 5.14956 5.17596 5.21406 5.26012 5.33747 5.54592 5.56034 5.65412 5.69056 5.70889 5.79013 5.84122 5.88821 5.94990 6.03391 6.09976 6.24335 6.28059 6.49747 6.60414 6.61335 6.70900 7.10472 7.18685 7.55193 7.55409 7.61065 8.06129 8.30925 8.60905 9.17818 9.53990 10.05395 10.75608 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.033253 B = 0.001956 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.820077 B =14312.254793 C =14804.868808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.109 4.109 3 C -0.028 4.028 4 N -0.552 5.552 5 H 0.417 0.583 6 C 0.030 3.970 7 C -0.221 4.221 8 C 0.604 3.396 9 O -0.538 6.538 10 N -0.614 5.614 11 C 0.091 3.909 12 C -0.167 4.167 13 C 0.082 3.918 14 H 0.093 0.907 15 N -0.653 5.653 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.582 6.582 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.269 1.269 27 H -0.284 1.284 28 C 0.147 3.853 29 H 0.077 0.923 30 C -0.151 4.151 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.168 0.832 35 H 0.184 0.816 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.354 0.646 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.055 27.032 -7.377 28.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.156 4.156 4 N -0.146 5.146 5 H 0.253 0.747 6 C -0.106 4.106 7 C -0.231 4.231 8 C 0.395 3.605 9 O -0.416 6.416 10 N -0.349 5.349 11 C -0.032 4.032 12 C -0.207 4.207 13 C -0.030 4.030 14 H 0.111 0.889 15 N -0.285 5.285 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.466 6.466 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.194 1.194 27 H -0.209 1.209 28 C 0.044 3.956 29 H 0.095 0.905 30 C -0.209 4.209 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.185 0.815 35 H 0.200 0.800 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.175 0.825 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.612 26.546 -7.357 27.671 hybrid contribution 1.896 0.012 0.551 1.974 sum -0.716 26.558 -6.807 27.426 Atomic orbital electron populations 1.20215 0.89293 1.02767 1.01984 1.20569 0.95685 0.90276 1.05045 1.21593 0.82517 0.99198 1.12259 1.41560 1.08265 1.06792 1.57975 0.74703 1.22751 0.99275 0.83768 1.04810 1.20361 0.92705 0.92711 1.17343 1.17005 0.84297 0.83238 0.75995 1.90742 1.17315 1.83145 1.50386 1.48421 1.07032 1.06742 1.72654 1.22609 0.81710 0.98967 0.99917 1.23594 1.00854 0.95445 1.00787 1.22623 0.93391 0.89754 0.97193 0.88891 1.60041 1.48000 1.11216 1.09230 1.21719 0.92871 0.93178 1.00443 1.19799 0.85350 0.84774 0.87502 1.90533 1.33093 1.80171 1.42801 1.41859 1.26698 1.17569 1.33934 1.19703 1.12593 0.96687 1.13822 0.87913 1.25262 0.95581 0.99092 0.98056 1.69610 1.15825 1.32338 1.36587 0.85856 0.78855 0.79825 0.79752 1.20462 1.19385 1.20937 1.21470 0.95702 0.78347 1.00111 0.90525 1.21927 0.98734 1.03679 0.96536 0.91879 0.92399 0.90050 0.81485 0.79972 0.91144 0.89995 0.90108 0.89705 0.82476 0.93785 0.89488 0.77483 0.91898 0.93404 0.92171 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 10.06 36.00 0.36 -0.49 16 2 C -0.11 -1.14 6.35 -102.54 -0.65 -1.80 16 3 C -0.03 -0.20 11.82 -16.82 -0.20 -0.40 16 4 N -0.55 -3.09 5.90 -12.84 -0.08 -3.17 16 5 H 0.42 0.82 8.96 -40.82 -0.37 0.45 16 6 C 0.03 0.22 10.25 -16.84 -0.17 0.05 16 7 C -0.22 -2.49 6.23 -103.35 -0.64 -3.14 16 8 C 0.60 8.34 7.61 -12.59 -0.10 8.24 16 9 O -0.54 -9.20 14.26 5.25 0.07 -9.13 16 10 N -0.61 -7.20 3.08 -164.33 -0.51 -7.71 16 11 C 0.09 0.73 5.30 -2.52 -0.01 0.72 16 12 C -0.17 -1.50 6.67 -24.58 -0.16 -1.66 16 13 C 0.08 0.95 3.15 -65.88 -0.21 0.74 16 14 H 0.09 0.99 7.82 -51.93 -0.41 0.59 16 15 N -0.65 -9.87 4.39 -106.05 -0.47 -10.34 16 16 C 0.05 0.83 6.03 -4.97 -0.03 0.80 16 17 C 0.44 10.12 7.82 -10.98 -0.09 10.04 16 18 O -0.58 -15.55 15.78 5.55 0.09 -15.46 16 19 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 23 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 24 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 C 0.15 1.90 3.46 -66.95 -0.23 1.67 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 C -0.15 -2.21 8.27 37.16 0.31 -1.90 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 1.01 6.74 -51.93 -0.35 0.66 16 34 H 0.17 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.18 0.89 4.74 -52.49 -0.25 0.64 16 36 H 0.07 0.45 8.04 -51.93 -0.42 0.03 16 37 H 0.08 0.53 5.30 -51.93 -0.28 0.25 16 38 H 0.08 0.79 7.77 -51.93 -0.40 0.39 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.35 5.64 7.45 -39.29 -0.29 5.35 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 43 H 0.39 9.29 7.90 -40.82 -0.32 8.96 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.05 0.69 7.98 -51.93 -0.41 0.27 16 46 H 0.06 0.96 6.81 -51.92 -0.35 0.61 16 47 H 0.09 1.40 7.41 -51.93 -0.38 1.01 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -35.06 380.05 -8.28 -43.34 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -6.70 Total: 13.51 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -2.07 Total: 4.94 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.38 Total: -58.91 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: 0.16 Total: -24.59 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.06 -8.28 -43.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700856650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.297 kcal (2) G-P(sol) polarization free energy of solvation -35.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds