Wall clock time and date at job start Tue Mar 31 2020 18:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34489 * 126.83454 * 2 1 4 4 N 1.36448 * 108.85995 * 179.97438 * 3 2 1 5 5 H 0.96998 * 124.85216 * 180.02562 * 4 3 2 6 6 C 1.34657 * 110.29486 * 359.75251 * 4 3 2 7 7 C 1.36774 * 108.39778 * 0.40800 * 6 4 3 8 8 C 1.47258 * 126.94138 * 179.87590 * 7 6 4 9 9 O 1.21632 * 120.00025 * 188.31490 * 8 7 6 10 10 N 1.34778 * 120.00255 * 8.30520 * 8 7 6 11 11 C 1.47430 * 125.64499 * 358.54695 * 10 8 7 12 12 C 1.54912 * 104.82666 * 155.90551 * 11 10 8 13 13 C 1.55156 * 101.58441 * 37.01268 * 12 11 10 14 14 H 1.09003 * 110.87172 * 82.92974 * 13 12 11 15 15 N 1.46899 * 110.72176 * 206.13231 * 13 12 11 16 16 C 1.46906 * 110.99882 * 268.52334 * 15 13 12 17 17 C 1.50702 * 109.46731 * 179.97438 * 16 15 13 18 18 O 1.21285 * 120.00245 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99749 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99871 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00174 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99905 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00006 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99979 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47435 * 269.99875 * 24 22 20 26 26 H 1.48498 * 109.47226 * 30.00011 * 24 22 20 27 27 H 1.48500 * 109.47194 * 149.99590 * 24 22 20 28 28 C 1.47019 * 125.65087 * 178.59116 * 10 8 7 29 29 H 1.08999 * 109.88577 * 61.60465 * 28 10 8 30 30 C 1.53001 * 110.00961 * 300.51096 * 28 10 8 31 31 H 1.08999 * 109.47100 * 270.02349 * 1 2 3 32 32 H 1.08995 * 109.47146 * 30.02317 * 1 2 3 33 33 H 1.08997 * 109.47076 * 150.02544 * 1 2 3 34 34 H 1.08006 * 125.57027 * 359.96185 * 3 2 1 35 35 H 1.07999 * 125.79931 * 180.29414 * 6 4 3 36 36 H 1.09000 * 110.36629 * 274.74426 * 11 10 8 37 37 H 1.08997 * 110.36833 * 36.96280 * 11 10 8 38 38 H 1.08994 * 111.00739 * 278.92978 * 12 11 10 39 39 H 1.09002 * 110.99895 * 155.08227 * 12 11 10 40 40 H 1.00899 * 110.99553 * 32.47368 * 15 13 12 41 41 H 1.08998 * 109.46984 * 59.99588 * 16 15 13 42 42 H 1.08997 * 109.46777 * 299.99319 * 16 15 13 43 43 H 0.97000 * 120.00176 * 359.97438 * 19 17 16 44 44 H 0.96999 * 120.00034 * 180.02562 * 23 22 20 45 45 H 1.08997 * 109.47576 * 302.11636 * 30 28 10 46 46 H 1.09011 * 109.47134 * 62.11808 * 30 28 10 47 47 H 1.08999 * 109.47409 * 182.11057 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 0.0006 5 1 4.3840 1.2414 0.0011 6 6 3.6656 -0.6901 0.0064 7 6 2.3864 -1.1740 0.0005 8 6 1.9750 -2.5880 0.0012 9 8 0.8051 -2.8811 -0.1568 10 7 2.8947 -3.5574 0.1768 11 6 4.3437 -3.3461 0.3481 12 6 4.8409 -4.6031 1.1047 13 6 3.9656 -5.7156 0.4696 14 1 4.3950 -6.0574 -0.4722 15 7 3.7976 -6.8396 1.4003 16 6 4.8427 -7.8519 1.1973 17 6 4.6383 -8.9865 2.1680 18 8 3.7134 -8.9547 2.9520 19 7 5.4839 -10.0360 2.1655 20 6 5.2977 -11.0683 3.0481 21 1 4.4737 -11.0404 3.7457 22 6 6.1698 -12.1501 3.0460 23 7 7.1728 -12.1838 2.1975 24 14 5.9165 -13.5564 4.2491 25 1 6.6620 -13.2759 5.5025 26 1 4.4695 -13.6927 4.5537 27 1 6.4167 -14.8186 3.6476 28 6 2.6194 -5.0006 0.2283 29 1 2.1890 -5.3299 -0.7175 30 6 1.6538 -5.3088 1.3744 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8897 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.9867 2.1059 -0.0006 35 1 4.5664 -1.2859 0.0126 36 1 4.8332 -3.2693 -0.6228 37 1 4.5291 -2.4483 0.9377 38 1 4.6484 -4.5171 2.1741 39 1 5.8990 -4.7813 0.9130 40 1 3.7862 -6.5185 2.3567 41 1 5.8213 -7.4024 1.3651 42 1 4.7873 -8.2317 0.1772 43 1 6.2238 -10.0612 1.5388 44 1 7.7814 -12.9391 2.1958 45 1 2.0824 -4.9608 2.3142 46 1 0.7057 -4.8009 1.1973 47 1 1.4852 -6.3844 1.4282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700856650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:44 Heat of formation + Delta-G solvation = -33.418309 kcal Electronic energy + Delta-G solvation = -28443.468024 eV Core-core repulsion = 24433.283825 eV Total energy + Delta-G solvation = -4010.184199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.20436 -40.94055 -40.03378 -38.65789 -36.17157 -35.53948 -33.33486 -33.26169 -32.64333 -31.75973 -30.15938 -28.18277 -27.47536 -26.50637 -25.48146 -24.69834 -22.70345 -21.52466 -21.11031 -20.32541 -19.91240 -19.71142 -18.70169 -17.85338 -17.46670 -16.99635 -16.75755 -16.30616 -16.25525 -15.89556 -15.58136 -15.27984 -14.97856 -14.77890 -14.64413 -14.25592 -14.18474 -13.94440 -13.81149 -13.62557 -13.52106 -13.46753 -13.37012 -13.18508 -13.03624 -12.93342 -12.68102 -12.42989 -12.39249 -12.18917 -12.11863 -11.79186 -11.62394 -11.48563 -10.77092 -10.31083 -9.98730 -9.76037 -9.42754 -9.23280 -9.16222 -8.45035 -5.92969 0.81825 1.38691 1.42705 1.50638 1.55051 1.96500 2.09128 2.30759 2.49000 2.57335 2.96082 3.22753 3.43971 3.55818 3.73498 3.92780 4.06144 4.12423 4.17016 4.28314 4.34089 4.37597 4.47793 4.50257 4.55834 4.62416 4.64488 4.68654 4.73670 4.82877 4.89514 4.92266 5.04081 5.10942 5.11776 5.16702 5.33859 5.41682 5.43104 5.52089 5.84764 5.92791 5.98875 6.14422 6.39847 6.63091 6.65888 6.72659 7.15488 7.35191 7.59871 8.15818 8.72203 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.033253 B = 0.001956 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.820077 B =14312.254793 C =14804.868808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.155 4.155 3 C -0.008 4.008 4 N -0.533 5.533 5 H 0.439 0.561 6 C 0.055 3.945 7 C -0.266 4.266 8 C 0.593 3.407 9 O -0.591 6.591 10 N -0.613 5.613 11 C 0.089 3.911 12 C -0.158 4.158 13 C 0.087 3.913 14 H 0.112 0.888 15 N -0.671 5.671 16 C 0.068 3.932 17 C 0.437 3.563 18 O -0.625 6.625 19 N -0.573 5.573 20 C -0.332 4.332 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.990 3.010 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.271 1.271 28 C 0.146 3.854 29 H 0.062 0.938 30 C -0.138 4.138 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.201 0.799 35 H 0.214 0.786 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.347 0.653 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.046 0.954 46 H 0.037 0.963 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.199 29.239 -8.064 30.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.161 4.161 3 C -0.136 4.136 4 N -0.129 5.129 5 H 0.279 0.721 6 C -0.083 4.083 7 C -0.276 4.276 8 C 0.386 3.614 9 O -0.473 6.473 10 N -0.346 5.346 11 C -0.032 4.032 12 C -0.197 4.197 13 C -0.024 4.024 14 H 0.130 0.870 15 N -0.303 5.303 16 C -0.064 4.064 17 C 0.224 3.776 18 O -0.512 6.512 19 N -0.211 5.211 20 C -0.462 4.462 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.814 3.186 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.196 1.196 28 C 0.042 3.958 29 H 0.080 0.920 30 C -0.196 4.196 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.217 0.783 35 H 0.230 0.770 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.131 0.869 40 H 0.167 0.833 41 H 0.095 0.905 42 H 0.124 0.876 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.056 0.944 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.719 28.797 -8.068 29.915 hybrid contribution 0.849 -0.591 0.754 1.280 sum 1.568 28.206 -7.314 29.181 Atomic orbital electron populations 1.20104 0.90195 1.02127 1.01338 1.20801 0.95902 0.91510 1.07851 1.21971 0.82521 0.99702 1.09438 1.41612 1.08686 1.06525 1.56040 0.72063 1.23035 0.98644 0.84599 1.02023 1.20352 0.94857 0.91428 1.21003 1.17573 0.83904 0.84677 0.75270 1.90705 1.19550 1.84056 1.52960 1.48438 1.08694 1.05623 1.71875 1.22921 0.79131 0.99416 1.01777 1.23553 1.01747 0.94318 1.00097 1.22616 0.93004 0.89353 0.97384 0.87021 1.59945 1.48232 1.12611 1.09485 1.21564 0.94707 0.91151 0.98981 1.20978 0.83731 0.85407 0.87440 1.90506 1.34675 1.81184 1.44788 1.41916 1.27441 1.17798 1.33931 1.19631 1.12874 0.98680 1.15008 0.90550 1.25992 0.95042 1.00769 0.99451 1.69661 1.16026 1.33098 1.37204 0.84963 0.78340 0.77255 0.77998 1.19584 1.20077 1.19578 1.21354 0.96230 0.79878 0.98315 0.92038 1.21748 0.98435 1.01924 0.97524 0.92610 0.90137 0.93474 0.78261 0.76988 0.88179 0.87819 0.91040 0.86893 0.83250 0.90525 0.87602 0.76859 0.91342 0.93517 0.94420 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 10.06 71.23 0.72 -0.99 16 2 C -0.15 -3.14 6.35 -18.52 -0.12 -3.26 16 3 C -0.01 -0.09 11.82 83.12 0.98 0.89 16 4 N -0.53 -3.73 5.90 -194.55 -1.15 -4.87 16 5 H 0.44 -0.55 8.96 -92.71 -0.83 -1.38 16 6 C 0.05 0.63 10.25 83.92 0.86 1.49 16 7 C -0.27 -5.79 6.23 -19.04 -0.12 -5.90 16 8 C 0.59 16.87 7.61 86.61 0.66 17.53 16 9 O -0.59 -22.04 14.26 -4.13 -0.06 -22.10 16 10 N -0.61 -13.98 3.08 -792.06 -2.44 -16.42 16 11 C 0.09 1.11 5.30 86.86 0.46 1.57 16 12 C -0.16 -2.28 6.67 31.99 0.21 -2.07 16 13 C 0.09 1.85 3.15 46.10 0.15 2.00 16 14 H 0.11 2.01 7.82 -2.39 -0.02 1.99 16 15 N -0.67 -19.76 4.39 -489.43 -2.15 -21.91 16 16 C 0.07 2.12 6.03 85.56 0.52 2.64 16 17 C 0.44 20.18 7.82 87.66 0.69 20.87 16 18 O -0.63 -34.40 15.78 -3.05 -0.05 -34.44 16 19 N -0.57 -28.77 5.29 -306.99 -1.62 -30.39 16 20 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 21 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 23 N -0.92 -48.94 13.05 21.67 0.28 -48.66 16 24 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 28 C 0.15 3.83 3.46 45.34 0.16 3.98 16 29 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 30 C -0.14 -4.34 8.27 71.98 0.60 -3.75 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.31 6.74 -2.39 -0.02 1.29 16 34 H 0.20 0.85 8.06 -2.91 -0.02 0.83 16 35 H 0.21 0.95 4.74 -2.91 -0.01 0.94 16 36 H 0.10 0.74 8.04 -2.39 -0.02 0.72 16 37 H 0.10 0.86 5.30 -2.39 -0.01 0.85 16 38 H 0.07 1.21 7.77 -2.39 -0.02 1.20 16 39 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.35 11.03 7.45 -89.69 -0.67 10.37 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.11 2.96 8.08 -2.39 -0.02 2.94 16 43 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 44 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 45 H 0.05 1.43 7.98 -2.39 -0.02 1.41 16 46 H 0.04 1.32 6.81 -2.38 -0.02 1.31 16 47 H 0.07 2.36 7.41 -2.39 -0.02 2.34 16 Total: -1.00 -82.59 380.05 0.68 -81.90 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: -1.19 Total: 35.11 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 7.04 Total: 16.83 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -7.08 Total: -122.26 kcal Atomic # 8 Polarization: -56.44 SS G_CDS: -0.11 Total: -56.55 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -82.59 0.68 -81.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700856650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.485 kcal (2) G-P(sol) polarization free energy of solvation -82.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds