Wall clock time and date at job start Tue Mar 31 2020 18:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34481 * 126.83749 * 2 1 4 4 N 1.36444 * 108.85873 * 180.02562 * 3 2 1 5 5 H 0.96999 * 124.84958 * 180.02562 * 4 3 2 6 6 C 1.34661 * 110.29785 * 359.74503 * 4 3 2 7 7 C 1.36768 * 108.39398 * 0.41324 * 6 4 3 8 8 C 1.47263 * 126.93899 * 179.86575 * 7 6 4 9 9 O 1.21633 * 120.00118 * 214.11274 * 8 7 6 10 10 N 1.34774 * 119.99992 * 34.11728 * 8 7 6 11 11 C 1.47424 * 125.64986 * 355.72288 * 10 8 7 12 12 C 1.54905 * 104.83691 * 155.83621 * 11 10 8 13 13 C 1.55165 * 101.58208 * 37.00705 * 12 11 10 14 14 H 1.09000 * 110.71932 * 82.86031 * 13 12 11 15 15 N 1.46898 * 110.71904 * 206.13736 * 13 12 11 16 16 C 1.46896 * 111.00119 * 273.54443 * 15 13 12 17 17 C 1.50700 * 109.47313 * 180.02562 * 16 15 13 18 18 O 1.21295 * 119.99631 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99858 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99888 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99777 * 0.02562 * 20 19 17 22 22 C 1.38946 * 119.99974 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00086 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00146 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46792 * 59.99854 * 24 22 20 26 26 H 1.48488 * 109.47356 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46842 * 300.00776 * 24 22 20 28 28 C 1.47029 * 125.65105 * 175.67843 * 10 8 7 29 29 H 1.09004 * 109.87835 * 300.51189 * 28 10 8 30 30 C 1.53000 * 110.00655 * 61.60217 * 28 10 8 31 31 H 1.08989 * 109.47092 * 269.97892 * 1 2 3 32 32 H 1.08998 * 109.46881 * 29.98065 * 1 2 3 33 33 H 1.09002 * 109.46972 * 149.97229 * 1 2 3 34 34 H 1.08006 * 125.56967 * 359.97438 * 3 2 1 35 35 H 1.07997 * 125.80436 * 180.29312 * 6 4 3 36 36 H 1.09004 * 110.36498 * 36.99295 * 11 10 8 37 37 H 1.09004 * 110.36285 * 274.67137 * 11 10 8 38 38 H 1.08997 * 111.00629 * 155.07934 * 12 11 10 39 39 H 1.08999 * 111.00552 * 278.89845 * 12 11 10 40 40 H 1.00903 * 111.00000 * 37.50394 * 15 13 12 41 41 H 1.09007 * 109.46969 * 300.00652 * 16 15 13 42 42 H 1.08995 * 109.46900 * 59.99970 * 16 15 13 43 43 H 0.97001 * 120.00489 * 0.02562 * 19 17 16 44 44 H 0.97004 * 120.00003 * 179.97438 * 23 22 20 45 45 H 1.09004 * 109.46763 * 177.89065 * 30 28 10 46 46 H 1.08996 * 109.47411 * 297.88522 * 30 28 10 47 47 H 1.08999 * 109.47196 * 57.89378 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6551 -0.0006 5 1 4.3840 1.2412 -0.0003 6 6 3.6656 -0.6904 0.0047 7 6 2.3864 -1.1741 -0.0006 8 6 1.9749 -2.5881 -0.0004 9 8 0.9703 -2.9293 -0.5953 10 7 2.7114 -3.5041 0.6591 11 6 3.9917 -3.2466 1.3431 12 6 4.1015 -4.3619 2.4124 13 6 3.4863 -5.5734 1.6632 14 1 4.2294 -6.0490 1.0232 15 7 2.9219 -6.5405 2.6141 16 6 3.9481 -7.4845 3.0764 17 6 3.3332 -8.4591 4.0475 18 8 2.1559 -8.3751 4.3274 19 7 4.0916 -9.4232 4.6058 20 6 3.5323 -10.3096 5.4897 21 1 2.4839 -10.2354 5.7383 22 6 4.3140 -11.3039 6.0649 23 7 5.5895 -11.3944 5.7620 24 14 3.5519 -12.5120 7.2687 25 1 2.4594 -13.2591 6.5953 26 1 4.5893 -13.4658 7.7364 27 1 3.0009 -11.7709 8.4316 28 6 2.3706 -4.9257 0.8163 29 1 1.4130 -5.0229 1.3279 30 6 2.2990 -5.6015 -0.5545 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5143 34 1 1.9869 2.1058 -0.0004 35 1 4.5663 -1.2862 0.0099 36 1 3.9773 -2.2656 1.8181 37 1 4.8194 -3.3151 0.6371 38 1 5.1426 -4.5518 2.6734 39 1 3.5179 -4.1125 3.2985 40 1 2.4864 -6.0696 3.3931 41 1 4.3521 -8.0287 2.2227 42 1 4.7501 -6.9360 3.5702 43 1 5.0333 -9.4896 4.3829 44 1 6.1354 -12.0884 6.1639 45 1 2.0830 -6.6622 -0.4258 46 1 1.5093 -5.1393 -1.1468 47 1 3.2536 -5.4849 -1.0674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700856651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:49 Heat of formation + Delta-G solvation = -20.080583 kcal Electronic energy + Delta-G solvation = -28331.815251 eV Core-core repulsion = 24322.209420 eV Total energy + Delta-G solvation = -4009.605831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.51934 -39.99778 -38.33009 -37.49239 -34.70489 -33.78505 -32.71760 -31.77278 -31.23672 -30.82537 -29.38201 -26.98002 -26.76409 -24.94553 -23.95658 -23.52010 -21.83471 -20.91127 -19.90746 -19.20079 -18.86895 -18.06174 -17.89371 -16.80935 -16.38931 -15.92691 -15.25512 -14.97438 -14.72413 -14.52828 -14.28933 -14.10962 -13.98888 -13.82086 -13.63923 -13.44281 -13.13878 -13.08079 -12.87614 -12.62920 -12.48193 -12.40887 -12.16003 -11.89237 -11.65456 -11.60670 -11.49265 -11.44489 -11.07118 -10.96276 -10.77675 -10.43900 -10.21155 -9.80615 -9.49816 -8.91444 -8.64252 -8.57451 -8.46589 -8.06262 -7.95793 -6.41621 -3.82370 1.61326 2.13654 2.77633 2.97736 3.20727 3.26308 3.29961 3.31415 3.90621 4.05461 4.24574 4.36099 4.51563 4.54920 4.72520 4.84706 4.89209 5.07727 5.11277 5.13313 5.20097 5.25592 5.27690 5.35132 5.48959 5.56007 5.58335 5.64534 5.69143 5.77477 5.82441 5.87333 5.90083 5.97701 6.02830 6.15477 6.27885 6.36499 6.41163 6.54990 6.61624 7.10677 7.18978 7.52894 7.55372 7.60820 8.06260 8.26455 8.61285 9.18057 9.54192 10.05736 10.75990 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027739 B = 0.001959 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.178793 B =14288.564763 C =14528.349809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.114 4.114 3 C -0.024 4.024 4 N -0.552 5.552 5 H 0.417 0.583 6 C 0.040 3.960 7 C -0.218 4.218 8 C 0.605 3.395 9 O -0.537 6.537 10 N -0.613 5.613 11 C 0.101 3.899 12 C -0.170 4.170 13 C 0.084 3.916 14 H 0.095 0.905 15 N -0.656 5.656 16 C 0.053 3.947 17 C 0.440 3.560 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.145 3.855 29 H 0.085 0.915 30 C -0.156 4.156 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.168 0.832 35 H 0.172 0.828 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.353 0.647 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.036 25.255 -12.026 28.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C -0.152 4.152 4 N -0.146 5.146 5 H 0.253 0.747 6 C -0.096 4.096 7 C -0.228 4.228 8 C 0.395 3.605 9 O -0.414 6.414 10 N -0.348 5.348 11 C -0.022 4.022 12 C -0.210 4.210 13 C -0.028 4.028 14 H 0.113 0.887 15 N -0.288 5.288 16 C -0.080 4.080 17 C 0.225 3.775 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C 0.042 3.958 29 H 0.103 0.897 30 C -0.214 4.214 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.185 0.815 35 H 0.189 0.811 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.174 0.826 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.632 24.692 -12.608 27.773 hybrid contribution 1.487 0.171 1.143 1.883 sum 3.119 24.863 -11.465 27.556 Atomic orbital electron populations 1.20219 0.89418 1.02971 1.01879 1.20525 0.95569 0.90276 1.05640 1.21563 0.82450 0.99167 1.12031 1.41481 1.08261 1.06662 1.58244 0.74691 1.22019 0.98542 0.83719 1.05319 1.20307 0.92871 0.92633 1.17003 1.17040 0.82253 0.83414 0.77766 1.90755 1.26187 1.80858 1.43597 1.48435 1.22957 1.09361 1.54003 1.22350 0.86065 0.99556 0.94264 1.23617 1.02731 0.96270 0.98396 1.22697 0.94759 0.90817 0.94515 0.88677 1.59949 1.30061 1.18510 1.20284 1.21677 0.93058 0.94625 0.98625 1.19800 0.87628 0.84626 0.85412 1.90537 1.16176 1.74783 1.65119 1.41852 1.11582 1.27030 1.39555 1.19657 0.96733 1.07474 1.19014 0.87965 1.25259 0.95370 0.98524 0.98802 1.69603 1.05535 1.34828 1.44408 0.85913 0.78375 0.79673 0.80243 1.19858 1.21004 1.19931 1.21475 0.99011 0.78757 0.96592 0.89663 1.22069 1.02044 1.01232 0.96070 0.91923 0.92094 0.90273 0.81450 0.81101 0.90384 0.91519 0.89707 0.90164 0.82630 0.89492 0.93724 0.77471 0.91841 0.90999 0.91281 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 10.29 36.01 0.37 -0.49 16 2 C -0.11 -1.17 6.35 -102.54 -0.65 -1.82 16 3 C -0.02 -0.17 11.82 -16.83 -0.20 -0.37 16 4 N -0.55 -3.01 5.90 -12.85 -0.08 -3.09 16 5 H 0.42 0.78 8.96 -40.82 -0.37 0.42 16 6 C 0.04 0.29 9.98 -16.84 -0.17 0.12 16 7 C -0.22 -2.41 5.82 -103.35 -0.60 -3.02 16 8 C 0.61 8.27 7.56 -12.59 -0.10 8.18 16 9 O -0.54 -9.16 14.79 5.25 0.08 -9.08 16 10 N -0.61 -7.20 3.07 -164.33 -0.50 -7.71 16 11 C 0.10 0.85 5.37 -2.53 -0.01 0.83 16 12 C -0.17 -1.60 6.63 -24.58 -0.16 -1.76 16 13 C 0.08 0.99 2.76 -65.88 -0.18 0.81 16 14 H 0.10 1.05 7.61 -51.93 -0.40 0.66 16 15 N -0.66 -10.21 5.90 -106.05 -0.63 -10.84 16 16 C 0.05 0.88 6.03 -4.98 -0.03 0.85 16 17 C 0.44 10.22 7.82 -10.99 -0.09 10.13 16 18 O -0.58 -15.74 15.78 5.54 0.09 -15.66 16 19 N -0.56 -14.11 5.29 -10.96 -0.06 -14.16 16 20 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 24 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 28 C 0.14 1.88 3.23 -66.95 -0.22 1.66 16 29 H 0.09 1.31 8.03 -51.93 -0.42 0.89 16 30 C -0.16 -2.02 9.10 37.16 0.34 -1.68 16 31 H 0.06 0.58 8.14 -51.94 -0.42 0.16 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.96 6.99 -51.93 -0.36 0.60 16 34 H 0.17 0.69 8.06 -52.48 -0.42 0.27 16 35 H 0.17 0.83 6.47 -52.49 -0.34 0.49 16 36 H 0.08 0.57 6.60 -51.93 -0.34 0.23 16 37 H 0.07 0.43 7.73 -51.93 -0.40 0.03 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.82 7.82 -51.93 -0.41 0.41 16 40 H 0.35 5.77 8.00 -39.29 -0.31 5.45 16 41 H 0.09 1.34 8.09 -51.93 -0.42 0.92 16 42 H 0.04 0.66 8.13 -51.93 -0.42 0.23 16 43 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 1.01 6.78 -51.93 -0.35 0.65 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -35.16 385.93 -8.43 -43.59 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -6.91 Total: 13.26 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -1.94 Total: 5.49 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.54 Total: -59.44 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.17 Total: -24.74 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.16 -8.43 -43.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700856651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.512 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds