Wall clock time and date at job start Tue Mar 31 2020 18:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34481 * 126.83749 * 2 1 4 4 N 1.36444 * 108.85873 * 180.02562 * 3 2 1 5 5 H 0.96999 * 124.84958 * 180.02562 * 4 3 2 6 6 C 1.34661 * 110.29785 * 359.74503 * 4 3 2 7 7 C 1.36768 * 108.39398 * 0.41324 * 6 4 3 8 8 C 1.47263 * 126.93899 * 179.86575 * 7 6 4 9 9 O 1.21633 * 120.00118 * 214.11274 * 8 7 6 10 10 N 1.34774 * 119.99992 * 34.11728 * 8 7 6 11 11 C 1.47424 * 125.64986 * 355.72288 * 10 8 7 12 12 C 1.54905 * 104.83691 * 155.83621 * 11 10 8 13 13 C 1.55165 * 101.58208 * 37.00705 * 12 11 10 14 14 H 1.09000 * 110.71932 * 82.86031 * 13 12 11 15 15 N 1.46898 * 110.71904 * 206.13736 * 13 12 11 16 16 C 1.46896 * 111.00119 * 273.54443 * 15 13 12 17 17 C 1.50700 * 109.47313 * 180.02562 * 16 15 13 18 18 O 1.21295 * 119.99631 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99858 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99888 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99777 * 0.02562 * 20 19 17 22 22 C 1.38946 * 119.99974 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00086 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00146 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46792 * 59.99854 * 24 22 20 26 26 H 1.48488 * 109.47356 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46842 * 300.00776 * 24 22 20 28 28 C 1.47029 * 125.65105 * 175.67843 * 10 8 7 29 29 H 1.09004 * 109.87835 * 300.51189 * 28 10 8 30 30 C 1.53000 * 110.00655 * 61.60217 * 28 10 8 31 31 H 1.08989 * 109.47092 * 269.97892 * 1 2 3 32 32 H 1.08998 * 109.46881 * 29.98065 * 1 2 3 33 33 H 1.09002 * 109.46972 * 149.97229 * 1 2 3 34 34 H 1.08006 * 125.56967 * 359.97438 * 3 2 1 35 35 H 1.07997 * 125.80436 * 180.29312 * 6 4 3 36 36 H 1.09004 * 110.36498 * 36.99295 * 11 10 8 37 37 H 1.09004 * 110.36285 * 274.67137 * 11 10 8 38 38 H 1.08997 * 111.00629 * 155.07934 * 12 11 10 39 39 H 1.08999 * 111.00552 * 278.89845 * 12 11 10 40 40 H 1.00903 * 111.00000 * 37.50394 * 15 13 12 41 41 H 1.09007 * 109.46969 * 300.00652 * 16 15 13 42 42 H 1.08995 * 109.46900 * 59.99970 * 16 15 13 43 43 H 0.97001 * 120.00489 * 0.02562 * 19 17 16 44 44 H 0.97004 * 120.00003 * 179.97438 * 23 22 20 45 45 H 1.09004 * 109.46763 * 177.89065 * 30 28 10 46 46 H 1.08996 * 109.47411 * 297.88522 * 30 28 10 47 47 H 1.08999 * 109.47196 * 57.89378 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6551 -0.0006 5 1 4.3840 1.2412 -0.0003 6 6 3.6656 -0.6904 0.0047 7 6 2.3864 -1.1741 -0.0006 8 6 1.9749 -2.5881 -0.0004 9 8 0.9703 -2.9293 -0.5953 10 7 2.7114 -3.5041 0.6591 11 6 3.9917 -3.2466 1.3431 12 6 4.1015 -4.3619 2.4124 13 6 3.4863 -5.5734 1.6632 14 1 4.2294 -6.0490 1.0232 15 7 2.9219 -6.5405 2.6141 16 6 3.9481 -7.4845 3.0764 17 6 3.3332 -8.4591 4.0475 18 8 2.1559 -8.3751 4.3274 19 7 4.0916 -9.4232 4.6058 20 6 3.5323 -10.3096 5.4897 21 1 2.4839 -10.2354 5.7383 22 6 4.3140 -11.3039 6.0649 23 7 5.5895 -11.3944 5.7620 24 14 3.5519 -12.5120 7.2687 25 1 2.4594 -13.2591 6.5953 26 1 4.5893 -13.4658 7.7364 27 1 3.0009 -11.7709 8.4316 28 6 2.3706 -4.9257 0.8163 29 1 1.4130 -5.0229 1.3279 30 6 2.2990 -5.6015 -0.5545 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5143 34 1 1.9869 2.1058 -0.0004 35 1 4.5663 -1.2862 0.0099 36 1 3.9773 -2.2656 1.8181 37 1 4.8194 -3.3151 0.6371 38 1 5.1426 -4.5518 2.6734 39 1 3.5179 -4.1125 3.2985 40 1 2.4864 -6.0696 3.3931 41 1 4.3521 -8.0287 2.2227 42 1 4.7501 -6.9360 3.5702 43 1 5.0333 -9.4896 4.3829 44 1 6.1354 -12.0884 6.1639 45 1 2.0830 -6.6622 -0.4258 46 1 1.5093 -5.1393 -1.1468 47 1 3.2536 -5.4849 -1.0674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700856651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:48 Heat of formation + Delta-G solvation = -47.129898 kcal Electronic energy + Delta-G solvation = -28332.988197 eV Core-core repulsion = 24322.209420 eV Total energy + Delta-G solvation = -4010.778778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.15317 -40.91558 -40.05448 -38.64417 -36.17496 -35.52135 -33.37824 -33.26012 -32.69713 -31.78402 -30.18179 -28.37884 -27.45477 -26.47377 -25.01373 -24.66651 -22.62281 -21.78282 -21.11165 -20.51541 -19.88365 -19.58158 -18.73940 -17.91836 -17.54997 -17.21427 -16.67891 -16.31822 -15.92007 -15.82516 -15.49459 -15.25610 -14.99715 -14.89398 -14.69947 -14.34107 -14.10762 -14.01443 -13.92939 -13.70229 -13.58137 -13.47186 -13.27028 -13.19073 -13.08367 -12.89440 -12.61075 -12.51427 -12.41857 -12.30972 -12.11981 -11.96391 -11.71627 -11.49083 -10.84849 -10.32866 -9.99771 -9.72607 -9.45098 -9.27219 -9.14632 -8.45318 -5.93595 0.91029 1.40509 1.42552 1.50935 1.53073 1.92417 2.07871 2.30384 2.38458 2.52533 2.94235 3.22160 3.43514 3.53703 3.73531 4.00918 4.04034 4.07411 4.23850 4.26866 4.32703 4.37404 4.44816 4.48437 4.53937 4.59480 4.65856 4.68247 4.75410 4.78099 4.86728 4.94751 5.03899 5.07378 5.11629 5.15632 5.27915 5.31319 5.42342 5.47259 5.83657 5.91918 6.00628 6.13116 6.35535 6.62233 6.63537 6.74064 7.14598 7.30835 7.58651 8.14692 8.71629 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027739 B = 0.001959 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.178793 B =14288.564763 C =14528.349809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.158 4.158 3 C -0.005 4.005 4 N -0.534 5.534 5 H 0.438 0.562 6 C 0.064 3.936 7 C -0.262 4.262 8 C 0.596 3.404 9 O -0.590 6.590 10 N -0.612 5.612 11 C 0.101 3.899 12 C -0.162 4.162 13 C 0.090 3.910 14 H 0.114 0.886 15 N -0.676 5.676 16 C 0.070 3.930 17 C 0.436 3.564 18 O -0.627 6.627 19 N -0.572 5.572 20 C -0.334 4.334 21 H 0.076 0.924 22 C -0.012 4.012 23 N -0.918 5.918 24 Si 0.991 3.009 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.144 3.856 29 H 0.048 0.952 30 C -0.147 4.147 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.200 0.800 35 H 0.203 0.797 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.345 0.655 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.398 0.602 44 H 0.278 0.722 45 H 0.064 0.936 46 H 0.043 0.957 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.465 27.231 -12.071 30.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.165 4.165 3 C -0.133 4.133 4 N -0.129 5.129 5 H 0.279 0.721 6 C -0.074 4.074 7 C -0.273 4.273 8 C 0.388 3.612 9 O -0.471 6.471 10 N -0.345 5.345 11 C -0.021 4.021 12 C -0.202 4.202 13 C -0.021 4.021 14 H 0.132 0.868 15 N -0.308 5.308 16 C -0.062 4.062 17 C 0.223 3.777 18 O -0.513 6.513 19 N -0.209 5.209 20 C -0.464 4.464 21 H 0.094 0.906 22 C -0.212 4.212 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.194 1.194 27 H -0.197 1.197 28 C 0.040 3.960 29 H 0.066 0.934 30 C -0.206 4.206 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.217 0.783 35 H 0.219 0.781 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.086 0.914 40 H 0.165 0.835 41 H 0.126 0.874 42 H 0.095 0.905 43 H 0.232 0.768 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.062 0.938 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.144 26.707 -12.654 29.998 hybrid contribution 0.397 -0.367 1.123 1.247 sum 5.541 26.340 -11.531 29.283 Atomic orbital electron populations 1.20120 0.90312 1.02218 1.01388 1.20752 0.95772 0.91474 1.08461 1.21936 0.82459 0.99656 1.09260 1.41528 1.08663 1.06383 1.56347 0.72094 1.22321 0.97954 0.84543 1.02550 1.20284 0.94991 0.91275 1.20724 1.17601 0.81663 0.84768 0.77128 1.90716 1.28533 1.81823 1.46044 1.48470 1.24037 1.08373 1.53592 1.22628 0.85085 0.99932 0.94461 1.23575 1.03726 0.94983 0.97884 1.22675 0.94356 0.91115 0.93937 0.86798 1.59877 1.30656 1.19758 1.20467 1.21527 0.93284 0.93675 0.97682 1.20973 0.87056 0.84514 0.85119 1.90509 1.18389 1.75854 1.66575 1.41906 1.11935 1.27385 1.39722 1.19602 0.96113 1.09507 1.21153 0.90563 1.25997 0.95821 0.99488 0.99891 1.69654 1.06138 1.35301 1.44811 0.85022 0.77834 0.77639 0.78048 1.19965 1.19394 1.19746 1.21336 0.98124 0.80195 0.96365 0.93378 1.21965 1.02135 1.00432 0.96023 0.92347 0.89963 0.93812 0.78269 0.78082 0.88818 0.88220 0.86997 0.91358 0.83544 0.87437 0.90519 0.76813 0.91292 0.91698 0.93755 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.74 10.29 71.24 0.73 -1.00 16 2 C -0.16 -3.17 6.35 -18.51 -0.12 -3.28 16 3 C 0.00 -0.05 11.82 83.12 0.98 0.93 16 4 N -0.53 -3.65 5.90 -194.56 -1.15 -4.79 16 5 H 0.44 -0.56 8.96 -92.71 -0.83 -1.39 16 6 C 0.06 0.73 9.98 83.91 0.84 1.56 16 7 C -0.26 -5.63 5.82 -19.04 -0.11 -5.74 16 8 C 0.60 16.87 7.56 86.62 0.65 17.52 16 9 O -0.59 -22.00 14.79 -4.14 -0.06 -22.06 16 10 N -0.61 -14.10 3.07 -792.05 -2.43 -16.53 16 11 C 0.10 1.35 5.37 86.85 0.47 1.82 16 12 C -0.16 -2.55 6.63 31.99 0.21 -2.34 16 13 C 0.09 1.97 2.76 46.11 0.13 2.10 16 14 H 0.11 2.13 7.61 -2.39 -0.02 2.11 16 15 N -0.68 -20.70 5.90 -489.45 -2.89 -23.59 16 16 C 0.07 2.24 6.03 85.56 0.52 2.75 16 17 C 0.44 20.39 7.82 87.66 0.69 21.07 16 18 O -0.63 -34.99 15.78 -3.07 -0.05 -35.04 16 19 N -0.57 -28.88 5.29 -306.98 -1.62 -30.51 16 20 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 21 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 23 N -0.92 -48.93 13.05 21.66 0.28 -48.65 16 24 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 C 0.14 3.81 3.23 45.34 0.15 3.96 16 29 H 0.05 1.61 8.03 -2.38 -0.02 1.59 16 30 C -0.15 -3.93 9.10 71.98 0.65 -3.27 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.04 1.20 6.99 -2.39 -0.02 1.18 16 34 H 0.20 0.83 8.06 -2.91 -0.02 0.80 16 35 H 0.20 0.93 6.47 -2.91 -0.02 0.91 16 36 H 0.09 1.02 6.60 -2.39 -0.02 1.00 16 37 H 0.10 0.76 7.73 -2.39 -0.02 0.74 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.27 7.82 -2.39 -0.02 1.25 16 40 H 0.35 11.47 8.00 -89.69 -0.72 10.75 16 41 H 0.11 3.03 8.09 -2.38 -0.02 3.01 16 42 H 0.08 1.99 8.13 -2.39 -0.02 1.97 16 43 H 0.40 18.80 7.90 -92.71 -0.73 18.07 16 44 H 0.28 13.88 8.31 -92.70 -0.77 13.11 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.04 1.39 6.78 -2.39 -0.02 1.38 16 47 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -82.70 385.93 -0.08 -82.77 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: -1.25 Total: 35.62 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 7.07 Total: 17.79 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -7.81 Total: -124.08 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: -0.11 Total: -57.10 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -82.70 -0.08 -82.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700856651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.645 kcal (2) G-P(sol) polarization free energy of solvation -82.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds