Wall clock time and date at job start Tue Mar 31 2020 18:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34479 * 126.83626 * 2 1 4 4 N 1.36451 * 108.85675 * 180.02562 * 3 2 1 5 5 H 0.97000 * 124.84573 * 179.73168 * 4 3 2 6 6 C 1.34651 * 110.29824 * 0.02562 * 4 3 2 7 7 C 1.36772 * 108.39648 * 0.02562 * 6 4 3 8 8 C 1.47262 * 126.94026 * 180.02562 * 7 6 4 9 9 O 1.21633 * 120.00050 * 214.51129 * 8 7 6 10 10 N 1.34777 * 120.00625 * 34.51510 * 8 7 6 11 11 C 1.46508 * 119.99457 * 4.30211 * 10 8 7 12 12 C 1.46499 * 120.00581 * 184.30366 * 10 8 7 13 13 C 1.53778 * 113.61469 * 219.49545 * 12 10 8 14 14 C 1.54047 * 86.99027 * 270.83806 * 13 12 10 15 15 N 1.46895 * 113.69694 * 220.01131 * 14 13 12 16 16 C 1.46894 * 111.00150 * 252.53100 * 15 14 13 17 17 C 1.50698 * 109.47380 * 179.97438 * 16 15 14 18 18 O 1.21295 * 119.99982 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99962 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99817 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00058 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00062 * 180.02562 * 20 19 17 23 23 N 1.31408 * 119.99864 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00026 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47122 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47211 * 120.00141 * 24 22 20 27 27 H 1.48503 * 109.47258 * 240.00019 * 24 22 20 28 28 C 1.53780 * 113.61211 * 121.88984 * 12 10 8 29 29 H 1.09000 * 109.46902 * 90.02042 * 1 2 3 30 30 H 1.08998 * 109.47020 * 210.02367 * 1 2 3 31 31 H 1.09005 * 109.46694 * 330.02343 * 1 2 3 32 32 H 1.08000 * 125.57316 * 0.02562 * 3 2 1 33 33 H 1.07998 * 125.80669 * 179.97438 * 6 4 3 34 34 H 1.08998 * 109.46864 * 24.89213 * 11 10 8 35 35 H 1.08996 * 109.46680 * 144.89368 * 11 10 8 36 36 H 1.08999 * 109.47059 * 264.89393 * 11 10 8 37 37 H 1.08994 * 112.84651 * 350.69684 * 12 10 8 38 38 H 1.09004 * 113.61388 * 25.43951 * 13 12 10 39 39 H 1.09003 * 113.61338 * 156.33150 * 13 12 10 40 40 H 1.09001 * 113.61265 * 89.11392 * 14 13 12 41 41 H 1.00903 * 110.99755 * 128.57898 * 15 14 13 42 42 H 1.09003 * 109.47346 * 300.00558 * 16 15 14 43 43 H 1.09010 * 109.47232 * 59.99851 * 16 15 14 44 44 H 0.96996 * 120.00499 * 0.02562 * 19 17 16 45 45 H 0.96998 * 119.99950 * 179.97438 * 23 22 20 46 46 H 1.09000 * 113.61080 * 203.66745 * 28 12 10 47 47 H 1.09000 * 113.61927 * 334.56762 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6112 0.6551 -0.0006 5 1 4.3841 1.2412 -0.0044 6 6 3.6657 -0.6903 -0.0015 7 6 2.3864 -1.1741 -0.0022 8 6 1.9749 -2.5880 -0.0027 9 8 0.9718 -2.9293 -0.6000 10 7 2.7097 -3.5041 0.6586 11 6 3.8638 -3.0806 1.4555 12 6 2.3545 -4.9232 0.5806 13 6 2.5125 -5.6720 1.9144 14 6 3.9652 -5.9575 1.4887 15 7 4.4234 -7.3123 1.8243 16 6 5.3797 -7.2837 2.9389 17 6 5.8258 -8.6881 3.2543 18 8 5.3903 -9.6212 2.6132 19 7 6.7096 -8.9073 4.2480 20 6 7.1150 -10.1851 4.5353 21 1 6.7266 -11.0159 3.9650 22 6 8.0257 -10.4112 5.5601 23 7 8.4980 -9.4003 6.2543 24 14 8.5787 -12.1521 5.9510 25 1 7.9044 -13.1037 5.0318 26 1 10.0501 -12.2546 5.7785 27 1 8.2206 -12.4819 7.3540 28 6 3.4847 -5.8120 0.0352 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8903 0.5135 32 1 1.9869 2.1058 0.0004 33 1 4.5664 -1.2862 -0.0025 34 1 3.7316 -2.0435 1.7638 35 1 3.9479 -3.7143 2.3384 36 1 4.7706 -3.1690 0.8572 37 1 1.3931 -5.0928 0.0959 38 1 2.4311 -5.0272 2.7895 39 1 1.8952 -6.5674 1.9884 40 1 4.6699 -5.1844 1.7950 41 1 4.8217 -7.7694 1.0177 42 1 6.2444 -6.6812 2.6604 43 1 4.9017 -6.8489 3.8168 44 1 7.0582 -8.1612 4.7604 45 1 9.1334 -9.5582 6.9699 46 1 3.1327 -6.7456 -0.4038 47 1 4.1876 -5.2802 -0.6060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701030394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:15 Heat of formation + Delta-G solvation = 11.317805 kcal Electronic energy + Delta-G solvation = -28023.336313 eV Core-core repulsion = 24015.092018 eV Total energy + Delta-G solvation = -4008.244295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64205 -40.33334 -38.46133 -37.87473 -34.99863 -33.96705 -32.96247 -32.74447 -31.19970 -30.02684 -27.72217 -26.88730 -26.70244 -25.68335 -24.55618 -23.56954 -21.74036 -20.71056 -19.50396 -19.13859 -18.80545 -18.22823 -17.86916 -16.95276 -16.08763 -16.03831 -15.59039 -15.17273 -14.91508 -14.72230 -14.50382 -14.32061 -14.14552 -13.87262 -13.64613 -13.42521 -13.21820 -13.08937 -12.97664 -12.64526 -12.56644 -12.31713 -12.05669 -11.99489 -11.83616 -11.67319 -11.55918 -11.25884 -11.05485 -10.63095 -10.37308 -10.33954 -10.21371 -9.95663 -9.52121 -8.96739 -8.71006 -8.60698 -8.43209 -8.04596 -7.95590 -6.42150 -3.82708 1.53339 2.07644 2.71646 2.90457 3.16177 3.20119 3.26776 3.34303 3.91139 4.12247 4.39133 4.41354 4.48631 4.57613 4.61482 4.71993 4.84499 4.89755 4.99918 5.04047 5.17995 5.20400 5.21522 5.27148 5.45875 5.49876 5.52788 5.59039 5.73425 5.77408 5.80899 5.82055 5.88539 5.91644 5.94087 6.04969 6.15701 6.27666 6.42207 6.55839 6.60220 7.05568 7.28242 7.31262 7.55328 7.68589 8.06764 8.14683 8.61287 9.18019 9.54420 10.05964 10.75730 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026155 B = 0.001863 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.303269 B =15028.607980 C =15723.509771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.114 4.114 3 C -0.024 4.024 4 N -0.551 5.551 5 H 0.418 0.582 6 C 0.043 3.957 7 C -0.223 4.223 8 C 0.592 3.408 9 O -0.539 6.539 10 N -0.595 5.595 11 C 0.064 3.936 12 C 0.119 3.881 13 C -0.133 4.133 14 C 0.053 3.947 15 N -0.656 5.656 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C -0.151 4.151 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.351 0.649 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.100 0.900 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.112 24.928 -10.404 28.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C -0.152 4.152 4 N -0.145 5.145 5 H 0.254 0.746 6 C -0.093 4.093 7 C -0.233 4.233 8 C 0.382 3.618 9 O -0.416 6.416 10 N -0.327 5.327 11 C -0.079 4.079 12 C 0.015 3.985 13 C -0.173 4.173 14 C -0.058 4.058 15 N -0.289 5.289 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.190 4.190 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.186 0.814 33 H 0.191 0.809 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.129 0.871 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.171 0.829 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.119 0.881 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.241 24.063 -10.588 27.867 hybrid contribution 2.050 0.284 0.314 2.093 sum -7.191 24.347 -10.274 27.387 Atomic orbital electron populations 1.20121 0.89363 1.02023 1.02128 1.20531 0.95550 0.90340 1.05670 1.21566 0.82440 0.99190 1.11987 1.41518 1.08325 1.06701 1.57979 0.74580 1.22088 0.98593 0.83712 1.04869 1.20300 0.92886 0.92662 1.17477 1.17475 0.82368 0.84055 0.77925 1.90761 1.25608 1.81080 1.44197 1.47382 1.30046 1.06173 1.49133 1.22187 0.87924 1.01719 0.96020 1.21815 0.99316 0.78913 0.98461 1.23518 0.97314 1.00221 0.96214 1.23405 0.96101 0.90926 0.95341 1.60188 1.42295 1.15790 1.10583 1.21727 0.94213 0.96603 0.95694 1.19844 0.83530 0.89914 0.84093 1.90527 1.58954 1.44311 1.52864 1.41876 1.38567 1.09438 1.30282 1.19761 1.22408 0.85153 1.15438 0.87864 1.25264 0.96988 0.99523 0.96264 1.69618 1.31812 1.30803 1.22170 0.85798 0.78249 0.81968 0.78323 1.19205 1.20798 1.20749 1.23635 0.98426 1.00558 0.96415 0.91479 0.91448 0.92193 0.81410 0.80899 0.90246 0.90228 0.92747 0.87147 0.91376 0.87835 0.90676 0.82902 0.94032 0.89712 0.77503 0.91958 0.88123 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.05 36.01 0.36 -0.34 16 2 C -0.11 -1.08 6.35 -102.54 -0.65 -1.73 16 3 C -0.02 -0.15 11.82 -16.82 -0.20 -0.35 16 4 N -0.55 -2.73 5.90 -12.85 -0.08 -2.80 16 5 H 0.42 0.64 8.96 -40.82 -0.37 0.27 16 6 C 0.04 0.29 9.62 -16.85 -0.16 0.13 16 7 C -0.22 -2.28 5.46 -103.35 -0.56 -2.85 16 8 C 0.59 7.47 7.56 -12.59 -0.10 7.37 16 9 O -0.54 -8.67 16.09 5.25 0.08 -8.59 16 10 N -0.59 -6.31 3.08 -174.33 -0.54 -6.85 16 11 C 0.06 0.49 7.35 59.85 0.44 0.93 16 12 C 0.12 1.36 4.47 -67.12 -0.30 1.06 16 13 C -0.13 -1.55 7.12 -25.78 -0.18 -1.74 16 14 C 0.05 0.63 3.48 -66.76 -0.23 0.39 16 15 N -0.66 -10.38 6.19 -106.98 -0.66 -11.04 16 16 C 0.05 0.87 6.01 -4.98 -0.03 0.84 16 17 C 0.44 10.37 7.82 -10.98 -0.09 10.28 16 18 O -0.58 -15.86 15.78 5.54 0.09 -15.77 16 19 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 20 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 24 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 C -0.15 -1.65 7.29 -25.92 -0.19 -1.84 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.71 7.98 -51.93 -0.41 0.30 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 33 H 0.17 0.78 6.53 -52.49 -0.34 0.44 16 34 H 0.08 0.53 5.66 -51.93 -0.29 0.24 16 35 H 0.08 0.63 5.11 -51.93 -0.27 0.36 16 36 H 0.05 0.34 7.54 -51.93 -0.39 -0.05 16 37 H 0.11 1.41 7.19 -51.93 -0.37 1.04 16 38 H 0.07 0.76 7.41 -51.93 -0.38 0.38 16 39 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.08 0.80 5.25 -51.93 -0.27 0.53 16 41 H 0.35 5.76 8.25 -39.29 -0.32 5.44 16 42 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 43 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 44 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 384.14 15.07 5.79 5.79 Total: -1.00 -35.50 384.14 -8.45 -43.95 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -6.64 Total: 13.19 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -2.13 Total: 4.17 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.61 Total: -58.76 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: 0.17 Total: -24.36 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.50 -8.45 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701030394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.267 kcal (2) G-P(sol) polarization free energy of solvation -35.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds