Wall clock time and date at job start Tue Mar 31 2020 18:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34479 * 126.83626 * 2 1 4 4 N 1.36451 * 108.85675 * 180.02562 * 3 2 1 5 5 H 0.97000 * 124.84573 * 179.73168 * 4 3 2 6 6 C 1.34651 * 110.29824 * 0.02562 * 4 3 2 7 7 C 1.36772 * 108.39648 * 0.02562 * 6 4 3 8 8 C 1.47262 * 126.94026 * 180.02562 * 7 6 4 9 9 O 1.21633 * 120.00050 * 214.51129 * 8 7 6 10 10 N 1.34777 * 120.00625 * 34.51510 * 8 7 6 11 11 C 1.46508 * 119.99457 * 4.30211 * 10 8 7 12 12 C 1.46499 * 120.00581 * 184.30366 * 10 8 7 13 13 C 1.53778 * 113.61469 * 219.49545 * 12 10 8 14 14 C 1.54047 * 86.99027 * 270.83806 * 13 12 10 15 15 N 1.46895 * 113.69694 * 220.01131 * 14 13 12 16 16 C 1.46894 * 111.00150 * 252.53100 * 15 14 13 17 17 C 1.50698 * 109.47380 * 179.97438 * 16 15 14 18 18 O 1.21295 * 119.99982 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99962 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99817 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00058 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00062 * 180.02562 * 20 19 17 23 23 N 1.31408 * 119.99864 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00026 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47122 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47211 * 120.00141 * 24 22 20 27 27 H 1.48503 * 109.47258 * 240.00019 * 24 22 20 28 28 C 1.53780 * 113.61211 * 121.88984 * 12 10 8 29 29 H 1.09000 * 109.46902 * 90.02042 * 1 2 3 30 30 H 1.08998 * 109.47020 * 210.02367 * 1 2 3 31 31 H 1.09005 * 109.46694 * 330.02343 * 1 2 3 32 32 H 1.08000 * 125.57316 * 0.02562 * 3 2 1 33 33 H 1.07998 * 125.80669 * 179.97438 * 6 4 3 34 34 H 1.08998 * 109.46864 * 24.89213 * 11 10 8 35 35 H 1.08996 * 109.46680 * 144.89368 * 11 10 8 36 36 H 1.08999 * 109.47059 * 264.89393 * 11 10 8 37 37 H 1.08994 * 112.84651 * 350.69684 * 12 10 8 38 38 H 1.09004 * 113.61388 * 25.43951 * 13 12 10 39 39 H 1.09003 * 113.61338 * 156.33150 * 13 12 10 40 40 H 1.09001 * 113.61265 * 89.11392 * 14 13 12 41 41 H 1.00903 * 110.99755 * 128.57898 * 15 14 13 42 42 H 1.09003 * 109.47346 * 300.00558 * 16 15 14 43 43 H 1.09010 * 109.47232 * 59.99851 * 16 15 14 44 44 H 0.96996 * 120.00499 * 0.02562 * 19 17 16 45 45 H 0.96998 * 119.99950 * 179.97438 * 23 22 20 46 46 H 1.09000 * 113.61080 * 203.66745 * 28 12 10 47 47 H 1.09000 * 113.61927 * 334.56762 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6112 0.6551 -0.0006 5 1 4.3841 1.2412 -0.0044 6 6 3.6657 -0.6903 -0.0015 7 6 2.3864 -1.1741 -0.0022 8 6 1.9749 -2.5880 -0.0027 9 8 0.9718 -2.9293 -0.6000 10 7 2.7097 -3.5041 0.6586 11 6 3.8638 -3.0806 1.4555 12 6 2.3545 -4.9232 0.5806 13 6 2.5125 -5.6720 1.9144 14 6 3.9652 -5.9575 1.4887 15 7 4.4234 -7.3123 1.8243 16 6 5.3797 -7.2837 2.9389 17 6 5.8258 -8.6881 3.2543 18 8 5.3903 -9.6212 2.6132 19 7 6.7096 -8.9073 4.2480 20 6 7.1150 -10.1851 4.5353 21 1 6.7266 -11.0159 3.9650 22 6 8.0257 -10.4112 5.5601 23 7 8.4980 -9.4003 6.2543 24 14 8.5787 -12.1521 5.9510 25 1 7.9044 -13.1037 5.0318 26 1 10.0501 -12.2546 5.7785 27 1 8.2206 -12.4819 7.3540 28 6 3.4847 -5.8120 0.0352 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8903 0.5135 32 1 1.9869 2.1058 0.0004 33 1 4.5664 -1.2862 -0.0025 34 1 3.7316 -2.0435 1.7638 35 1 3.9479 -3.7143 2.3384 36 1 4.7706 -3.1690 0.8572 37 1 1.3931 -5.0928 0.0959 38 1 2.4311 -5.0272 2.7895 39 1 1.8952 -6.5674 1.9884 40 1 4.6699 -5.1844 1.7950 41 1 4.8217 -7.7694 1.0177 42 1 6.2444 -6.6812 2.6604 43 1 4.9017 -6.8489 3.8168 44 1 7.0582 -8.1612 4.7604 45 1 9.1334 -9.5582 6.9699 46 1 3.1327 -6.7456 -0.4038 47 1 4.1876 -5.2802 -0.6060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701030394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:14 Heat of formation + Delta-G solvation = -15.715153 kcal Electronic energy + Delta-G solvation = -28024.508550 eV Core-core repulsion = 24015.092018 eV Total energy + Delta-G solvation = -4009.416532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.24096 -41.19456 -40.07947 -39.09318 -36.23592 -35.73635 -34.14876 -33.34802 -33.21171 -30.68205 -28.68900 -28.08401 -27.40089 -26.70017 -26.07154 -24.67084 -22.62765 -21.39980 -21.06627 -20.10198 -19.85611 -19.54551 -18.84597 -18.03964 -17.46517 -16.91382 -16.82924 -16.43257 -16.22698 -16.10421 -15.57379 -15.45993 -15.23802 -14.95542 -14.73312 -14.35073 -14.14393 -13.97758 -13.86758 -13.62781 -13.52394 -13.35140 -13.24995 -13.20709 -13.00054 -12.87830 -12.84493 -12.41549 -12.36371 -12.25979 -12.11025 -11.62368 -11.50244 -11.33208 -10.90115 -10.30796 -10.00246 -9.70370 -9.44100 -9.26981 -9.13194 -8.46222 -5.94466 0.87835 1.36999 1.42517 1.51159 1.56499 1.95100 2.06832 2.29988 2.34219 2.53276 2.98007 3.21404 3.47566 3.55213 3.70487 3.87779 3.98194 4.00805 4.12330 4.26116 4.31040 4.31864 4.45527 4.50081 4.57952 4.61418 4.64914 4.69140 4.84419 4.87580 4.89026 4.91422 4.94461 4.98332 5.06264 5.15907 5.19977 5.30426 5.42224 5.66998 5.83780 5.95251 6.00726 6.19265 6.43691 6.47728 6.61638 6.72991 7.13993 7.27535 7.57886 8.13582 8.71338 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026155 B = 0.001863 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.303269 B =15028.607980 C =15723.509771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.157 4.157 3 C -0.006 4.006 4 N -0.534 5.534 5 H 0.438 0.562 6 C 0.064 3.936 7 C -0.264 4.264 8 C 0.584 3.416 9 O -0.591 6.591 10 N -0.591 5.591 11 C 0.058 3.942 12 C 0.121 3.879 13 C -0.130 4.130 14 C 0.059 3.941 15 N -0.673 5.673 16 C 0.066 3.934 17 C 0.437 3.563 18 O -0.625 6.625 19 N -0.573 5.573 20 C -0.333 4.333 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.275 1.275 26 H -0.270 1.270 27 H -0.272 1.272 28 C -0.141 4.141 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.200 0.800 33 H 0.200 0.800 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.346 0.654 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.093 0.907 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.964 27.354 -9.861 29.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.163 4.163 3 C -0.134 4.134 4 N -0.130 5.130 5 H 0.278 0.722 6 C -0.074 4.074 7 C -0.275 4.275 8 C 0.376 3.624 9 O -0.473 6.473 10 N -0.322 5.322 11 C -0.083 4.083 12 C 0.016 3.984 13 C -0.170 4.170 14 C -0.050 4.050 15 N -0.305 5.305 16 C -0.066 4.066 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.180 4.180 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.217 0.783 33 H 0.217 0.783 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.165 0.835 42 H 0.089 0.911 43 H 0.120 0.880 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.112 0.888 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.045 26.550 -10.014 29.237 hybrid contribution 1.358 -0.403 0.127 1.422 sum -5.687 26.147 -9.887 28.527 Atomic orbital electron populations 1.20037 0.90050 1.01672 1.01412 1.20766 0.95830 0.91412 1.08269 1.21952 0.82405 0.99737 1.09325 1.41569 1.08755 1.06415 1.56212 0.72156 1.22354 0.98046 0.84521 1.02454 1.20295 0.94819 0.91505 1.20864 1.17976 0.81772 0.85335 0.77279 1.90720 1.27936 1.82016 1.46599 1.47429 1.30570 1.05357 1.48860 1.22420 0.87462 1.02464 0.95990 1.21652 0.98697 0.79858 0.98194 1.23451 0.97120 0.99769 0.96619 1.23492 0.96188 0.89505 0.95814 1.60163 1.41946 1.18253 1.10156 1.21596 0.95722 0.92329 0.96986 1.20969 0.81934 0.92179 0.82497 1.90497 1.60044 1.46610 1.53991 1.41934 1.39292 1.08770 1.31075 1.19690 1.24105 0.85857 1.16610 0.90475 1.26017 0.96401 1.03340 0.95530 1.69667 1.31824 1.32294 1.22248 0.84885 0.78144 0.77251 0.78142 1.19947 1.19504 1.19678 1.23548 0.98162 1.00190 0.96133 0.92457 0.94325 0.89903 0.78296 0.78289 0.89007 0.90110 0.90374 0.89403 0.90642 0.89325 0.88235 0.83450 0.91069 0.87979 0.76898 0.91307 0.88820 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 10.05 71.24 0.72 -0.66 16 2 C -0.16 -2.83 6.35 -18.52 -0.12 -2.95 16 3 C -0.01 -0.06 11.82 83.11 0.98 0.93 16 4 N -0.53 -3.27 5.90 -194.56 -1.15 -4.41 16 5 H 0.44 -0.67 8.96 -92.71 -0.83 -1.50 16 6 C 0.06 0.67 9.62 83.92 0.81 1.48 16 7 C -0.26 -5.19 5.46 -19.04 -0.10 -5.29 16 8 C 0.58 15.04 7.56 86.62 0.65 15.69 16 9 O -0.59 -20.40 16.09 -4.14 -0.07 -20.47 16 10 N -0.59 -12.07 3.08 -823.70 -2.54 -14.61 16 11 C 0.06 0.72 7.35 127.77 0.94 1.66 16 12 C 0.12 2.76 4.47 45.52 0.20 2.96 16 13 C -0.13 -2.96 7.12 31.21 0.22 -2.74 16 14 C 0.06 1.30 3.48 45.53 0.16 1.46 16 15 N -0.67 -20.46 6.19 -492.39 -3.05 -23.50 16 16 C 0.07 2.16 6.01 85.56 0.51 2.67 16 17 C 0.44 20.53 7.82 87.66 0.69 21.21 16 18 O -0.62 -34.71 15.78 -3.08 -0.05 -34.76 16 19 N -0.57 -29.08 5.29 -306.98 -1.62 -30.70 16 20 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -49.02 13.05 21.66 0.28 -48.74 16 24 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 28 C -0.14 -2.95 7.29 31.12 0.23 -2.73 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.04 0.90 7.98 -2.39 -0.02 0.88 16 31 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.20 0.60 8.06 -2.91 -0.02 0.57 16 33 H 0.20 0.93 6.53 -2.91 -0.02 0.91 16 34 H 0.09 0.94 5.66 -2.39 -0.01 0.93 16 35 H 0.08 1.01 5.11 -2.39 -0.01 1.00 16 36 H 0.08 0.63 7.54 -2.39 -0.02 0.61 16 37 H 0.09 2.42 7.19 -2.39 -0.02 2.40 16 38 H 0.07 1.59 7.41 -2.38 -0.02 1.58 16 39 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.10 1.75 5.25 -2.39 -0.01 1.74 16 41 H 0.35 11.13 8.25 -89.69 -0.74 10.39 16 42 H 0.07 1.94 8.13 -2.39 -0.02 1.93 16 43 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 44 H 0.40 18.93 7.90 -92.71 -0.73 18.20 16 45 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 46 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -80.70 384.14 -0.26 -80.95 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: -1.26 Total: 36.00 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 7.17 Total: 15.40 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -8.08 Total: -121.97 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -0.12 Total: -55.23 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -80.70 -0.26 -80.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701030394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.237 kcal (2) G-P(sol) polarization free energy of solvation -80.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds