Wall clock time and date at job start Tue Mar 31 2020 18:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34486 * 126.83648 * 2 1 4 4 N 1.36444 * 108.85718 * 180.25877 * 3 2 1 5 5 H 0.96996 * 124.85244 * 179.77153 * 4 3 2 6 6 C 1.34662 * 110.29941 * 359.75063 * 4 3 2 7 7 C 1.36766 * 108.39219 * 359.97438 * 6 4 3 8 8 C 1.47266 * 126.94002 * 179.97438 * 7 6 4 9 9 O 1.21625 * 120.00274 * 173.60880 * 8 7 6 10 10 N 1.34775 * 119.99970 * 353.60808 * 8 7 6 11 11 C 1.47430 * 125.64623 * 354.69676 * 10 8 7 12 12 C 1.54918 * 104.83208 * 204.15021 * 11 10 8 13 13 C 1.55154 * 101.58359 * 322.99603 * 12 11 10 14 14 C 1.47028 * 125.65397 * 174.72842 * 10 8 7 15 15 H 1.09005 * 109.87931 * 59.49803 * 14 10 8 16 16 C 1.53003 * 109.87780 * 298.33867 * 14 10 8 17 17 N 1.46900 * 109.46763 * 175.84663 * 16 14 10 18 18 C 1.46902 * 110.99733 * 174.89773 * 17 16 14 19 19 C 1.50703 * 109.47141 * 179.97438 * 18 17 16 20 20 O 1.21290 * 119.99844 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00108 * 179.97438 * 19 18 17 22 22 C 1.37093 * 120.00186 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99731 * 0.02562 * 22 21 19 24 24 C 1.38948 * 120.00115 * 180.02562 * 22 21 19 25 25 N 1.31416 * 120.00066 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 120.00009 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47199 * 59.99404 * 26 24 22 28 28 H 1.48496 * 109.47143 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.46774 * 299.99718 * 26 24 22 30 30 H 1.09008 * 109.46659 * 270.14631 * 1 2 3 31 31 H 1.09001 * 109.47393 * 30.14259 * 1 2 3 32 32 H 1.08997 * 109.47819 * 150.14610 * 1 2 3 33 33 H 1.08000 * 125.57158 * 359.97155 * 3 2 1 34 34 H 1.07994 * 125.80469 * 180.02562 * 6 4 3 35 35 H 1.08996 * 110.36736 * 322.98805 * 11 10 8 36 36 H 1.09004 * 110.36597 * 85.31764 * 11 10 8 37 37 H 1.08998 * 111.00103 * 81.06926 * 12 11 10 38 38 H 1.09000 * 111.00315 * 204.91708 * 12 11 10 39 39 H 1.09001 * 110.71560 * 277.13917 * 13 12 11 40 40 H 1.08995 * 110.72353 * 153.86343 * 13 12 11 41 41 H 1.09001 * 109.46375 * 295.84074 * 16 14 10 42 42 H 1.09001 * 109.47228 * 55.84359 * 16 14 10 43 43 H 1.00897 * 110.99888 * 298.84835 * 17 16 14 44 44 H 1.09002 * 109.47209 * 299.99715 * 18 17 16 45 45 H 1.08996 * 109.47330 * 59.99767 * 18 17 16 46 46 H 0.97006 * 119.99581 * 0.02562 * 21 19 18 47 47 H 0.96997 * 120.00000 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6552 -0.0058 5 1 4.3840 1.2412 -0.0102 6 6 3.6656 -0.6903 -0.0042 7 6 2.3864 -1.1740 0.0034 8 6 1.9748 -2.5880 0.0072 9 8 0.8005 -2.8793 0.1313 10 7 2.8995 -3.5593 -0.1269 11 6 4.3340 -3.3489 -0.3944 12 6 4.8108 -4.6649 -1.0583 13 6 3.9875 -5.7236 -0.2781 14 6 2.6448 -5.0042 -0.0313 15 1 1.9193 -5.3035 -0.7879 16 6 2.1184 -5.3485 1.3635 17 7 1.7733 -6.7753 1.4181 18 6 1.3781 -7.1697 2.7769 19 6 1.0315 -8.6362 2.7935 20 8 1.1068 -9.2888 1.7739 21 7 0.6389 -9.2229 3.9416 22 6 0.3231 -10.5569 3.9567 23 1 0.3894 -11.1378 3.0486 24 6 -0.0821 -11.1616 5.1402 25 7 -0.1622 -10.4549 6.2453 26 14 -0.5117 -12.9795 5.1609 27 1 0.6709 -13.7724 4.7394 28 1 -0.9118 -13.3780 6.5343 29 1 -1.6366 -13.2328 4.2251 30 1 -0.3633 0.0026 1.0278 31 1 -0.3634 0.8887 -0.5160 32 1 -0.3634 -0.8912 -0.5115 33 1 1.9868 2.1059 -0.0004 34 1 4.5663 -1.2861 -0.0074 35 1 4.4739 -2.5087 -1.0744 36 1 4.8726 -3.1776 0.5377 37 1 4.5610 -4.6800 -2.1192 38 1 5.8801 -4.8132 -0.9082 39 1 4.4725 -5.9695 0.6666 40 1 3.8400 -6.6191 -0.8817 41 1 2.8870 -5.1319 2.1054 42 1 1.2311 -4.7517 1.5745 43 1 1.0489 -6.9979 0.7519 44 1 2.2036 -6.9833 3.4639 45 1 0.5098 -6.5880 3.0860 46 1 0.5791 -8.7010 4.7572 47 1 -0.4448 -10.8771 7.0716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716790388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:48 Heat of formation + Delta-G solvation = -15.158532 kcal Electronic energy + Delta-G solvation = -28263.761431 eV Core-core repulsion = 24254.369036 eV Total energy + Delta-G solvation = -4009.392395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55637 -39.89739 -38.17973 -37.36639 -35.17856 -33.76341 -32.66998 -32.08310 -31.18202 -30.59367 -29.29581 -26.93381 -26.63112 -25.02474 -24.05662 -22.71205 -21.87813 -21.11303 -19.93292 -19.17328 -18.92954 -17.96215 -17.76479 -16.76791 -16.52138 -15.77272 -15.38403 -15.11441 -14.88532 -14.46890 -14.25764 -14.14864 -13.97424 -13.81447 -13.53516 -13.38796 -13.36379 -13.13964 -12.86701 -12.79376 -12.50875 -12.23996 -12.14651 -11.62942 -11.61100 -11.48892 -11.42915 -11.20793 -11.00696 -10.80223 -10.77395 -10.39809 -10.15737 -9.84595 -9.43974 -8.97143 -8.69096 -8.57413 -8.34453 -7.94937 -7.88403 -6.35600 -3.76297 1.51666 2.12851 2.75377 2.99849 3.24635 3.29622 3.34394 3.42409 3.98698 4.18722 4.32598 4.39548 4.49778 4.55613 4.71103 4.78326 4.85505 5.01908 5.07822 5.15785 5.22961 5.30196 5.31504 5.32805 5.48098 5.54093 5.60685 5.69217 5.71107 5.84165 5.89247 5.91865 5.97436 6.02642 6.07081 6.09912 6.25692 6.32587 6.40842 6.55556 6.60417 7.09233 7.29140 7.51153 7.60694 7.76092 8.12579 8.26714 8.68116 9.23920 9.61217 10.13017 10.82227 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020100 B = 0.002078 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.671484 B =13470.712891 C =14307.065288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.108 4.108 3 C -0.028 4.028 4 N -0.551 5.551 5 H 0.417 0.583 6 C 0.033 3.967 7 C -0.221 4.221 8 C 0.602 3.398 9 O -0.536 6.536 10 N -0.614 5.614 11 C 0.092 3.908 12 C -0.138 4.138 13 C -0.112 4.112 14 C 0.144 3.856 15 H 0.076 0.924 16 C 0.050 3.950 17 N -0.664 5.664 18 C 0.052 3.948 19 C 0.443 3.557 20 O -0.583 6.583 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.102 0.898 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.168 0.832 34 H 0.181 0.819 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.041 0.959 43 H 0.350 0.650 44 H 0.084 0.916 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.208 25.824 -12.345 31.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C -0.156 4.156 4 N -0.146 5.146 5 H 0.253 0.747 6 C -0.102 4.102 7 C -0.232 4.232 8 C 0.393 3.607 9 O -0.413 6.413 10 N -0.349 5.349 11 C -0.031 4.031 12 C -0.176 4.176 13 C -0.150 4.150 14 C 0.041 3.959 15 H 0.094 0.906 16 C -0.080 4.080 17 N -0.297 5.297 18 C -0.080 4.080 19 C 0.229 3.771 20 O -0.467 6.467 21 N -0.202 5.202 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.186 0.814 34 H 0.198 0.802 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.169 0.831 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.223 25.127 -12.677 30.683 hybrid contribution -0.628 0.189 0.825 1.054 sum 11.596 25.315 -11.851 30.262 Atomic orbital electron populations 1.20186 0.89234 1.02450 1.02146 1.20581 0.95708 0.90288 1.04907 1.21589 0.82474 0.99211 1.12278 1.41545 1.08277 1.06763 1.57973 0.74698 1.22610 0.99156 0.83764 1.04717 1.20342 0.92736 0.92615 1.17486 1.17072 0.84361 0.83378 0.75934 1.90775 1.16981 1.83277 1.50290 1.48368 1.08316 1.06208 1.71999 1.22617 0.81837 0.98961 0.99707 1.22861 1.00482 0.94161 1.00088 1.22577 0.93408 0.97644 1.01410 1.21459 0.98210 0.78822 0.97391 0.90558 1.22245 1.00218 0.89276 0.96291 1.60014 1.48090 1.15251 1.06300 1.21644 0.99704 0.95509 0.91178 1.19811 0.84070 0.88467 0.84797 1.90512 1.57955 1.65118 1.33128 1.41858 1.58789 1.10315 1.09207 1.19653 1.41552 0.84894 0.96695 0.87983 1.25264 0.97551 1.00399 0.94828 1.69611 1.47919 1.36969 0.99940 0.85913 0.79075 0.82128 0.77058 1.19912 1.21031 1.19936 0.91652 0.92408 0.90462 0.81444 0.80201 0.90278 0.91289 0.90654 0.89842 0.89947 0.89441 0.91276 0.94088 0.83129 0.89743 0.93866 0.77459 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.93 36.00 0.36 -0.50 16 2 C -0.11 -1.14 6.35 -102.54 -0.65 -1.80 16 3 C -0.03 -0.20 11.82 -16.83 -0.20 -0.40 16 4 N -0.55 -2.98 5.90 -12.85 -0.08 -3.05 16 5 H 0.42 0.71 8.96 -40.82 -0.37 0.34 16 6 C 0.03 0.24 10.24 -16.84 -0.17 0.07 16 7 C -0.22 -2.49 6.22 -103.35 -0.64 -3.13 16 8 C 0.60 8.33 7.56 -12.59 -0.10 8.24 16 9 O -0.54 -9.40 14.61 5.26 0.08 -9.32 16 10 N -0.61 -7.06 3.06 -164.31 -0.50 -7.56 16 11 C 0.09 0.67 5.13 -2.52 -0.01 0.66 16 12 C -0.14 -0.99 7.09 -24.58 -0.17 -1.16 16 13 C -0.11 -1.17 6.27 -24.90 -0.16 -1.32 16 14 C 0.14 1.83 3.07 -66.95 -0.21 1.63 16 15 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 16 C 0.05 0.74 5.07 -3.82 -0.02 0.72 16 17 N -0.66 -11.58 5.88 -115.05 -0.68 -12.26 16 18 C 0.05 1.00 6.16 -4.97 -0.03 0.97 16 19 C 0.44 10.92 7.82 -10.98 -0.09 10.83 16 20 O -0.58 -16.29 15.78 5.55 0.09 -16.20 16 21 N -0.56 -14.86 5.29 -10.96 -0.06 -14.92 16 22 C -0.30 -8.55 9.68 -14.94 -0.14 -8.70 16 23 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -25.20 13.05 55.50 0.72 -24.48 16 26 Si 0.93 21.55 29.55 -169.99 -5.02 16.52 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 30 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.98 7.00 -51.93 -0.36 0.61 16 33 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.18 0.81 4.79 -52.49 -0.25 0.56 16 35 H 0.08 0.44 5.89 -51.93 -0.31 0.14 16 36 H 0.07 0.42 7.79 -51.93 -0.40 0.01 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.90 7.78 -51.93 -0.40 0.50 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 42 H 0.04 0.69 6.91 -51.93 -0.36 0.33 16 43 H 0.35 6.44 8.48 -39.29 -0.33 6.11 16 44 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.39 9.90 7.90 -40.82 -0.32 9.58 16 47 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -36.27 384.55 -8.83 -45.09 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -6.84 Total: 13.79 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -2.33 Total: 6.59 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.59 Total: -62.27 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: 0.16 Total: -25.52 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.27 -8.83 -45.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716790388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.936 kcal (2) G-P(sol) polarization free energy of solvation -36.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds