Wall clock time and date at job start Tue Mar 31 2020 18:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34486 * 126.83648 * 2 1 4 4 N 1.36444 * 108.85718 * 180.25877 * 3 2 1 5 5 H 0.96996 * 124.85244 * 179.77153 * 4 3 2 6 6 C 1.34662 * 110.29941 * 359.75063 * 4 3 2 7 7 C 1.36766 * 108.39219 * 359.97438 * 6 4 3 8 8 C 1.47266 * 126.94002 * 179.97438 * 7 6 4 9 9 O 1.21625 * 120.00274 * 173.60880 * 8 7 6 10 10 N 1.34775 * 119.99970 * 353.60808 * 8 7 6 11 11 C 1.47430 * 125.64623 * 354.69676 * 10 8 7 12 12 C 1.54918 * 104.83208 * 204.15021 * 11 10 8 13 13 C 1.55154 * 101.58359 * 322.99603 * 12 11 10 14 14 C 1.47028 * 125.65397 * 174.72842 * 10 8 7 15 15 H 1.09005 * 109.87931 * 59.49803 * 14 10 8 16 16 C 1.53003 * 109.87780 * 298.33867 * 14 10 8 17 17 N 1.46900 * 109.46763 * 175.84663 * 16 14 10 18 18 C 1.46902 * 110.99733 * 174.89773 * 17 16 14 19 19 C 1.50703 * 109.47141 * 179.97438 * 18 17 16 20 20 O 1.21290 * 119.99844 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00108 * 179.97438 * 19 18 17 22 22 C 1.37093 * 120.00186 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99731 * 0.02562 * 22 21 19 24 24 C 1.38948 * 120.00115 * 180.02562 * 22 21 19 25 25 N 1.31416 * 120.00066 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 120.00009 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47199 * 59.99404 * 26 24 22 28 28 H 1.48496 * 109.47143 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.46774 * 299.99718 * 26 24 22 30 30 H 1.09008 * 109.46659 * 270.14631 * 1 2 3 31 31 H 1.09001 * 109.47393 * 30.14259 * 1 2 3 32 32 H 1.08997 * 109.47819 * 150.14610 * 1 2 3 33 33 H 1.08000 * 125.57158 * 359.97155 * 3 2 1 34 34 H 1.07994 * 125.80469 * 180.02562 * 6 4 3 35 35 H 1.08996 * 110.36736 * 322.98805 * 11 10 8 36 36 H 1.09004 * 110.36597 * 85.31764 * 11 10 8 37 37 H 1.08998 * 111.00103 * 81.06926 * 12 11 10 38 38 H 1.09000 * 111.00315 * 204.91708 * 12 11 10 39 39 H 1.09001 * 110.71560 * 277.13917 * 13 12 11 40 40 H 1.08995 * 110.72353 * 153.86343 * 13 12 11 41 41 H 1.09001 * 109.46375 * 295.84074 * 16 14 10 42 42 H 1.09001 * 109.47228 * 55.84359 * 16 14 10 43 43 H 1.00897 * 110.99888 * 298.84835 * 17 16 14 44 44 H 1.09002 * 109.47209 * 299.99715 * 18 17 16 45 45 H 1.08996 * 109.47330 * 59.99767 * 18 17 16 46 46 H 0.97006 * 119.99581 * 0.02562 * 21 19 18 47 47 H 0.96997 * 120.00000 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6552 -0.0058 5 1 4.3840 1.2412 -0.0102 6 6 3.6656 -0.6903 -0.0042 7 6 2.3864 -1.1740 0.0034 8 6 1.9748 -2.5880 0.0072 9 8 0.8005 -2.8793 0.1313 10 7 2.8995 -3.5593 -0.1269 11 6 4.3340 -3.3489 -0.3944 12 6 4.8108 -4.6649 -1.0583 13 6 3.9875 -5.7236 -0.2781 14 6 2.6448 -5.0042 -0.0313 15 1 1.9193 -5.3035 -0.7879 16 6 2.1184 -5.3485 1.3635 17 7 1.7733 -6.7753 1.4181 18 6 1.3781 -7.1697 2.7769 19 6 1.0315 -8.6362 2.7935 20 8 1.1068 -9.2888 1.7739 21 7 0.6389 -9.2229 3.9416 22 6 0.3231 -10.5569 3.9567 23 1 0.3894 -11.1378 3.0486 24 6 -0.0821 -11.1616 5.1402 25 7 -0.1622 -10.4549 6.2453 26 14 -0.5117 -12.9795 5.1609 27 1 0.6709 -13.7724 4.7394 28 1 -0.9118 -13.3780 6.5343 29 1 -1.6366 -13.2328 4.2251 30 1 -0.3633 0.0026 1.0278 31 1 -0.3634 0.8887 -0.5160 32 1 -0.3634 -0.8912 -0.5115 33 1 1.9868 2.1059 -0.0004 34 1 4.5663 -1.2861 -0.0074 35 1 4.4739 -2.5087 -1.0744 36 1 4.8726 -3.1776 0.5377 37 1 4.5610 -4.6800 -2.1192 38 1 5.8801 -4.8132 -0.9082 39 1 4.4725 -5.9695 0.6666 40 1 3.8400 -6.6191 -0.8817 41 1 2.8870 -5.1319 2.1054 42 1 1.2311 -4.7517 1.5745 43 1 1.0489 -6.9979 0.7519 44 1 2.2036 -6.9833 3.4639 45 1 0.5098 -6.5880 3.0860 46 1 0.5791 -8.7010 4.7572 47 1 -0.4448 -10.8771 7.0716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716790388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:47 Heat of formation + Delta-G solvation = -43.154575 kcal Electronic energy + Delta-G solvation = -28264.975431 eV Core-core repulsion = 24254.369036 eV Total energy + Delta-G solvation = -4010.606395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.19568 -40.79050 -40.12247 -38.39874 -36.64220 -35.80243 -33.34393 -33.30316 -32.94646 -31.57028 -30.16671 -28.26796 -27.47495 -26.45439 -25.37523 -23.96713 -22.55250 -21.88411 -21.23182 -20.59635 -19.92306 -19.66871 -18.57070 -17.93997 -17.67544 -17.11963 -16.81336 -16.52022 -16.12432 -15.84772 -15.59112 -15.29614 -14.97865 -14.93038 -14.78940 -14.74264 -14.12530 -14.02938 -13.90542 -13.64831 -13.59714 -13.48181 -13.27335 -13.22702 -13.15041 -12.85226 -12.63032 -12.44210 -12.33219 -12.12463 -11.86657 -11.81803 -11.57543 -11.51318 -10.88329 -10.39771 -10.03679 -9.80231 -9.47539 -9.39396 -9.17333 -8.47329 -5.96748 0.79188 1.39682 1.41129 1.49569 1.52807 1.93432 2.02157 2.29059 2.47910 2.53462 2.95140 3.19058 3.47736 3.63609 3.69547 3.91437 3.95490 4.11182 4.20506 4.25070 4.29343 4.34317 4.39234 4.46425 4.49892 4.53090 4.60438 4.67934 4.73672 4.84806 4.88287 4.91198 5.05781 5.07032 5.14419 5.21221 5.31485 5.39100 5.40277 5.48985 5.79579 5.83872 5.97715 6.03660 6.24614 6.57883 6.63395 6.72392 7.10382 7.31323 7.53196 8.08128 8.70011 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020100 B = 0.002078 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.671484 B =13470.712891 C =14307.065288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.155 4.155 3 C -0.007 4.007 4 N -0.532 5.532 5 H 0.439 0.561 6 C 0.061 3.939 7 C -0.267 4.267 8 C 0.590 3.410 9 O -0.593 6.593 10 N -0.613 5.613 11 C 0.085 3.915 12 C -0.125 4.125 13 C -0.110 4.110 14 C 0.144 3.856 15 H 0.051 0.949 16 C 0.061 3.939 17 N -0.665 5.665 18 C 0.066 3.934 19 C 0.440 3.560 20 O -0.620 6.620 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.080 0.920 24 C -0.015 4.015 25 N -0.921 5.921 26 Si 0.996 3.004 27 H -0.270 1.270 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.201 0.799 34 H 0.213 0.787 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.016 0.984 43 H 0.341 0.659 44 H 0.108 0.892 45 H 0.054 0.946 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.218 27.795 -12.262 33.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.161 4.161 3 C -0.135 4.135 4 N -0.127 5.127 5 H 0.280 0.720 6 C -0.077 4.077 7 C -0.278 4.278 8 C 0.384 3.616 9 O -0.475 6.475 10 N -0.346 5.346 11 C -0.036 4.036 12 C -0.163 4.163 13 C -0.148 4.148 14 C 0.040 3.960 15 H 0.069 0.931 16 C -0.069 4.069 17 N -0.297 5.297 18 C -0.067 4.067 19 C 0.228 3.772 20 O -0.506 6.506 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.098 0.902 24 C -0.215 4.215 25 N -0.562 5.562 26 Si 0.820 3.180 27 H -0.195 1.195 28 H -0.194 1.194 29 H -0.197 1.197 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.218 0.782 34 H 0.229 0.771 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.131 0.869 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.034 0.966 43 H 0.159 0.841 44 H 0.126 0.874 45 H 0.072 0.928 46 H 0.230 0.770 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.307 27.154 -12.586 33.617 hybrid contribution -1.537 -0.346 0.782 1.759 sum 13.770 26.808 -11.804 32.367 Atomic orbital electron populations 1.20067 0.90353 1.01810 1.01263 1.20791 0.95800 0.91640 1.07897 1.21955 0.82520 0.99662 1.09382 1.41595 1.08661 1.06510 1.55983 0.71980 1.22917 0.98506 0.84569 1.01712 1.20328 0.94924 0.91270 1.21234 1.17661 0.83945 0.84899 0.75142 1.90732 1.19412 1.84258 1.53129 1.48435 1.10035 1.05028 1.71094 1.22973 0.79144 0.99959 1.01494 1.22863 1.01521 0.92372 0.99563 1.22512 0.92473 0.98023 1.01777 1.21357 0.99085 0.80441 0.95121 0.93127 1.22207 0.99446 0.86999 0.98217 1.60061 1.47449 1.17008 1.05152 1.21521 1.00977 0.91527 0.92674 1.20704 0.82430 0.90434 0.83677 1.90480 1.59170 1.66694 1.34275 1.41924 1.59228 1.09917 1.09878 1.19660 1.44021 0.86118 0.96663 0.90155 1.26107 0.96571 1.04741 0.94032 1.69678 1.47511 1.38645 1.00363 0.84943 0.78788 0.76638 0.77680 1.19462 1.19412 1.19746 0.92763 0.90064 0.93946 0.78232 0.77058 0.87834 0.88933 0.90500 0.86869 0.90104 0.90520 0.90017 0.96618 0.84132 0.87448 0.92799 0.77030 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.73 9.93 71.23 0.71 -1.02 16 2 C -0.16 -3.21 6.35 -18.52 -0.12 -3.33 16 3 C -0.01 -0.08 11.82 83.12 0.98 0.90 16 4 N -0.53 -3.53 5.90 -194.56 -1.15 -4.68 16 5 H 0.44 -0.79 8.96 -92.71 -0.83 -1.62 16 6 C 0.06 0.68 10.24 83.91 0.86 1.54 16 7 C -0.27 -5.84 6.22 -19.04 -0.12 -5.96 16 8 C 0.59 17.04 7.56 86.62 0.66 17.70 16 9 O -0.59 -22.86 14.61 -4.11 -0.06 -22.92 16 10 N -0.61 -13.92 3.06 -792.02 -2.43 -16.35 16 11 C 0.09 0.98 5.13 86.86 0.45 1.43 16 12 C -0.13 -1.44 7.09 31.99 0.23 -1.21 16 13 C -0.11 -2.18 6.27 31.78 0.20 -1.99 16 14 C 0.14 3.77 3.07 45.34 0.14 3.91 16 15 H 0.05 1.56 8.14 -2.38 -0.02 1.55 16 16 C 0.06 1.88 5.07 86.30 0.44 2.32 16 17 N -0.66 -23.95 5.88 -517.92 -3.04 -26.99 16 18 C 0.07 2.54 6.16 85.56 0.53 3.07 16 19 C 0.44 22.29 7.82 87.66 0.69 22.98 16 20 O -0.62 -35.88 15.78 -3.06 -0.05 -35.93 16 21 N -0.57 -30.89 5.29 -306.99 -1.62 -32.51 16 22 C -0.34 -19.70 9.68 84.04 0.81 -18.88 16 23 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 24 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 25 N -0.92 -51.23 13.05 21.66 0.28 -50.95 16 26 Si 1.00 44.04 29.55 68.60 2.03 46.06 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 30 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.21 7.00 -2.39 -0.02 1.20 16 33 H 0.20 0.87 8.06 -2.91 -0.02 0.85 16 34 H 0.21 0.82 4.79 -2.91 -0.01 0.81 16 35 H 0.10 0.71 5.89 -2.39 -0.01 0.70 16 36 H 0.09 0.70 7.79 -2.39 -0.02 0.68 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.11 0.70 8.14 -2.39 -0.02 0.69 16 39 H 0.08 1.65 7.78 -2.39 -0.02 1.63 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.08 2.27 8.03 -2.39 -0.02 2.25 16 42 H 0.02 0.56 6.91 -2.39 -0.02 0.55 16 43 H 0.34 13.33 8.48 -89.70 -0.76 12.57 16 44 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 45 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.40 20.38 7.90 -92.70 -0.73 19.65 16 47 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -84.57 384.55 -0.42 -84.99 By element: Atomic # 1 Polarization: 39.47 SS G_CDS: -1.29 Total: 38.18 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 6.91 Total: 21.09 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -7.96 Total: -131.48 kcal Atomic # 8 Polarization: -58.74 SS G_CDS: -0.11 Total: -58.85 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -84.57 -0.42 -84.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716790388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.837 kcal (2) G-P(sol) polarization free energy of solvation -84.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds