Wall clock time and date at job start Tue Mar 31 2020 18:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35448 * 125.56493 * 2 1 4 4 C 1.39840 * 107.86378 * 179.71566 * 3 2 1 5 5 C 1.50704 * 126.45819 * 180.26275 * 4 3 2 6 6 C 1.37872 * 107.08369 * 0.41692 * 4 3 2 7 7 C 1.46679 * 126.23223 * 179.84738 * 6 4 3 8 8 O 1.21696 * 119.99910 * 359.71143 * 7 6 4 9 9 N 1.34770 * 120.00045 * 179.71775 * 7 6 4 10 10 C 1.46508 * 119.99844 * 180.02562 * 9 7 6 11 11 H 1.08990 * 112.84936 * 336.19188 * 10 9 7 12 12 C 1.53783 * 113.61262 * 107.50197 * 10 9 7 13 13 C 1.53777 * 87.08101 * 89.11427 * 12 10 9 14 14 H 1.09002 * 113.69157 * 270.86487 * 13 12 10 15 15 N 1.46906 * 113.61406 * 139.98083 * 13 12 10 16 16 C 1.46904 * 111.00071 * 107.49977 * 15 13 12 17 17 C 1.50700 * 109.47105 * 180.02562 * 16 15 13 18 18 O 1.21294 * 119.99799 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99763 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99668 * 179.97438 * 19 17 16 21 21 H 1.07995 * 119.99955 * 359.97438 * 20 19 17 22 22 C 1.38947 * 119.99755 * 179.97438 * 20 19 17 23 23 N 1.31403 * 120.00299 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99872 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46886 * 60.00227 * 24 22 20 26 26 H 1.48499 * 109.47275 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47126 * 300.00413 * 24 22 20 28 28 C 1.53772 * 87.08493 * 25.42920 * 13 12 10 29 29 N 1.35539 * 125.56271 * 179.97438 * 2 1 3 30 30 H 0.96998 * 125.67944 * 0.02562 * 29 2 1 31 31 H 1.09002 * 109.47398 * 270.02709 * 1 2 3 32 32 H 1.09007 * 109.46821 * 30.02965 * 1 2 3 33 33 H 1.09001 * 109.47209 * 150.02426 * 1 2 3 34 34 H 1.08005 * 126.07095 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.47086 * 270.18259 * 5 4 3 36 36 H 1.08999 * 109.47181 * 30.18210 * 5 4 3 37 37 H 1.09001 * 109.47051 * 150.18160 * 5 4 3 38 38 H 0.97000 * 120.00318 * 359.97438 * 9 7 6 39 39 H 1.08997 * 113.61293 * 334.55958 * 12 10 9 40 40 H 1.08996 * 113.61084 * 203.66476 * 12 10 9 41 41 H 1.00897 * 110.99665 * 231.45464 * 15 13 12 42 42 H 1.08999 * 109.46647 * 300.00163 * 16 15 13 43 43 H 1.08996 * 109.46868 * 59.99743 * 16 15 13 44 44 H 0.97002 * 120.00196 * 359.97438 * 19 17 16 45 45 H 0.97000 * 120.00191 * 179.97438 * 23 22 20 46 46 H 1.09003 * 113.61268 * 89.11502 * 28 13 12 47 47 H 1.08996 * 113.62028 * 219.93253 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6766 0.0066 5 6 4.8486 1.5591 0.0145 6 6 3.6121 -0.7020 0.0009 7 6 4.7859 -1.5816 0.0016 8 8 5.9049 -1.1031 0.0022 9 7 4.6252 -2.9197 0.0013 10 6 5.7976 -3.7983 0.0025 11 1 6.6878 -3.3167 -0.4020 12 6 6.0350 -4.5069 1.3465 13 6 5.1261 -5.6320 0.8243 14 1 4.0699 -5.4810 1.0476 15 7 5.5963 -6.9789 1.1748 16 6 4.7474 -7.5795 2.2124 17 6 5.2598 -8.9570 2.5455 18 8 6.2359 -9.3954 1.9743 19 7 4.6330 -9.7020 3.4774 20 6 5.0989 -10.9554 3.7800 21 1 5.9679 -11.3458 3.2715 22 6 4.4529 -11.7233 4.7411 23 7 3.3952 -11.2485 5.3595 24 14 5.0872 -13.4314 5.1530 25 1 6.4832 -13.3344 5.6501 26 1 4.2297 -14.0382 6.2026 27 1 5.0536 -14.2791 3.9342 28 6 5.5253 -5.1896 -0.5933 29 7 2.2953 -1.1026 0.0005 30 1 1.9834 -2.0210 0.0006 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3634 -0.8902 -0.5135 34 1 1.9545 2.1269 -0.0004 35 1 5.1468 1.7760 -1.0112 36 1 4.6202 2.4912 0.5313 37 1 5.6624 1.0483 0.5292 38 1 3.7334 -3.3011 0.0010 39 1 5.6208 -3.9721 2.2012 40 1 7.0687 -4.8165 1.5002 41 1 5.6419 -7.5697 0.3582 42 1 4.7717 -6.9570 3.1069 43 1 3.7229 -7.6509 1.8473 44 1 3.8522 -9.3514 3.9339 45 1 2.9440 -11.7847 6.0302 46 1 6.4197 -5.6859 -0.9699 47 1 4.6999 -5.2074 -1.3050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731447288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:33 Heat of formation + Delta-G solvation = -39.631007 kcal Electronic energy + Delta-G solvation = -27443.133063 eV Core-core repulsion = 23432.679462 eV Total energy + Delta-G solvation = -4010.453601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.44512 -41.03381 -40.10764 -39.16637 -36.16596 -35.50653 -33.96204 -33.55002 -33.22992 -32.15280 -28.71500 -28.53606 -27.43348 -26.73590 -26.05348 -24.10298 -22.71096 -21.43825 -21.15242 -20.49180 -20.12797 -19.87941 -19.34334 -17.92293 -17.15399 -16.87994 -16.48545 -16.41295 -16.35564 -16.15606 -15.65335 -15.54168 -15.16929 -15.07895 -14.80496 -14.31461 -14.15067 -13.94159 -13.90328 -13.57661 -13.52148 -13.44817 -13.28750 -13.16753 -13.03802 -12.91379 -12.88887 -12.59047 -12.44388 -12.39928 -12.13281 -11.57499 -11.52051 -11.50598 -11.07118 -10.35892 -10.19736 -10.03180 -9.72145 -9.33518 -8.98060 -8.47958 -5.96795 0.40241 1.38923 1.41091 1.51879 1.72258 1.96230 2.03866 2.16686 2.28212 2.29553 2.94019 3.19335 3.44916 3.51115 3.61679 3.85094 3.94461 3.96090 4.07861 4.19461 4.27777 4.28515 4.44629 4.54094 4.57041 4.63610 4.78465 4.81457 4.83397 4.83880 4.87710 4.93395 4.95149 5.03955 5.10188 5.15964 5.21572 5.39479 5.46788 5.49796 5.80782 5.91548 5.95853 6.14039 6.41126 6.41712 6.57986 6.58768 7.10911 7.11160 7.54743 8.10074 8.69110 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019068 B = 0.001811 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.051353 B =15454.099264 C =16443.107868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.069 3.931 3 C -0.228 4.228 4 C -0.089 4.089 5 C -0.088 4.088 6 C -0.087 4.087 7 C 0.589 3.411 8 O -0.565 6.565 9 N -0.700 5.700 10 C 0.127 3.873 11 H 0.094 0.906 12 C -0.138 4.138 13 C 0.061 3.939 14 H 0.089 0.911 15 N -0.671 5.671 16 C 0.066 3.934 17 C 0.436 3.564 18 O -0.624 6.624 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.271 1.271 28 C -0.132 4.132 29 N -0.528 5.528 30 H 0.427 0.573 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.158 0.842 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.407 0.593 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.348 0.652 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.103 0.897 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.593 24.526 -12.020 29.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C -0.252 4.252 4 C -0.099 4.099 5 C -0.145 4.145 6 C -0.199 4.199 7 C 0.379 3.621 8 O -0.444 6.444 9 N -0.351 5.351 10 C 0.021 3.979 11 H 0.112 0.888 12 C -0.178 4.178 13 C -0.049 4.049 14 H 0.107 0.893 15 N -0.304 5.304 16 C -0.067 4.067 17 C 0.224 3.776 18 O -0.510 6.510 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.196 1.196 28 C -0.170 4.170 29 N -0.126 5.126 30 H 0.267 0.733 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.175 0.825 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.244 0.756 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.168 0.832 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.121 0.879 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.811 24.498 -11.805 28.586 hybrid contribution -1.110 -1.628 0.278 1.990 sum -9.921 22.870 -11.527 27.465 Atomic orbital electron populations 1.20571 0.84892 1.05051 1.04200 1.21095 0.95157 0.85575 1.03129 1.20862 0.91114 0.99399 1.13777 1.20262 0.96539 0.91503 1.01549 1.20306 0.94044 0.98050 1.02124 1.19961 0.83492 0.94069 1.22381 1.17258 0.87472 0.81834 0.75526 1.90798 1.25760 1.75699 1.52175 1.45417 1.09773 1.04817 1.75075 1.21608 0.89165 0.89767 0.97350 0.88764 1.23527 1.01338 0.95953 0.97000 1.23218 0.97693 0.87715 0.96265 0.89324 1.60172 1.52604 1.03742 1.13882 1.21584 0.95483 0.91777 0.97838 1.20926 0.85550 0.88615 0.82549 1.90493 1.30069 1.74666 1.55792 1.41934 1.28503 1.14991 1.35590 1.19633 1.13045 0.92705 1.21110 0.90339 1.26041 0.95961 1.03592 0.95697 1.69656 1.20028 1.39851 1.26516 0.84992 0.78139 0.77056 0.78171 1.19871 1.19441 1.19588 1.23513 1.03791 0.93801 0.95902 1.41847 1.04350 1.09355 1.57071 0.73309 0.89478 0.88456 0.89989 0.82454 0.91505 0.90388 0.92373 0.75643 0.91962 0.89544 0.83190 0.88430 0.91123 0.76968 0.91268 0.87897 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.36 10.41 71.24 0.74 0.38 16 2 C 0.07 0.79 7.13 41.34 0.29 1.09 16 3 C -0.23 -3.44 10.66 22.01 0.23 -3.20 16 4 C -0.09 -1.80 6.21 -19.56 -0.12 -1.92 16 5 C -0.09 -1.73 9.83 71.24 0.70 -1.03 16 6 C -0.09 -1.70 7.06 40.35 0.28 -1.41 16 7 C 0.59 13.40 7.79 86.45 0.67 14.07 16 8 O -0.57 -17.12 14.40 -4.34 -0.06 -17.18 16 9 N -0.70 -11.72 5.26 -443.99 -2.33 -14.05 16 10 C 0.13 2.45 4.33 45.52 0.20 2.65 16 11 H 0.09 2.15 7.46 -2.39 -0.02 2.13 16 12 C -0.14 -3.10 7.68 31.12 0.24 -2.86 16 13 C 0.06 1.25 4.02 45.44 0.18 1.44 16 14 H 0.09 1.49 7.87 -2.39 -0.02 1.47 16 15 N -0.67 -19.91 6.18 -492.86 -3.05 -22.96 16 16 C 0.07 2.16 6.01 85.56 0.51 2.67 16 17 C 0.44 20.51 7.82 87.66 0.69 21.20 16 18 O -0.62 -34.40 15.78 -3.07 -0.05 -34.45 16 19 N -0.57 -29.18 5.29 -306.99 -1.62 -30.81 16 20 C -0.34 -19.01 9.68 84.04 0.81 -18.19 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -49.26 13.05 21.66 0.28 -48.98 16 24 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 C -0.13 -2.19 7.40 31.12 0.23 -1.96 16 29 N -0.53 -6.37 5.99 -171.93 -1.03 -7.40 16 30 H 0.43 2.48 8.19 -92.71 -0.76 1.72 16 31 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.10 0.21 8.14 -2.38 -0.02 0.19 16 33 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.41 6.49 -2.39 -0.02 1.39 16 38 H 0.41 4.25 7.83 -92.71 -0.73 3.53 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.35 10.67 8.25 -89.70 -0.74 9.93 16 42 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 44 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 45 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 46 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -76.14 395.39 -1.62 -77.75 By element: Atomic # 1 Polarization: 42.54 SS G_CDS: -1.92 Total: 40.63 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 6.14 Total: 12.67 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -7.75 Total: -124.20 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -0.11 Total: -51.63 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -76.14 -1.62 -77.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731447288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.122 kcal (2) G-P(sol) polarization free energy of solvation -76.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds