Wall clock time and date at job start Tue Mar 31 2020 18:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34485 * 126.83025 * 2 1 4 4 N 1.36454 * 108.85464 * 180.26479 * 3 2 1 5 5 H 0.96998 * 124.84885 * 179.73372 * 4 3 2 6 6 C 1.34651 * 110.29442 * 359.70350 * 4 3 2 7 7 C 1.36770 * 108.40308 * 0.02562 * 6 4 3 8 8 C 1.47260 * 126.94446 * 179.97438 * 7 6 4 9 9 O 1.21628 * 119.99642 * 180.02562 * 8 7 6 10 10 N 1.34769 * 120.00261 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00159 * 180.02562 * 10 8 7 12 12 C 1.53008 * 109.46986 * 179.97438 * 11 10 8 13 13 H 1.09002 * 110.62677 * 51.89411 * 12 11 10 14 14 C 1.55135 * 110.70624 * 288.59761 * 12 11 10 15 15 C 1.54903 * 101.65451 * 205.96860 * 14 12 11 16 16 N 1.47842 * 104.79653 * 37.06399 * 15 14 12 17 17 C 1.46904 * 111.00132 * 213.63866 * 16 15 14 18 18 C 1.50697 * 109.46892 * 290.84315 * 17 16 15 19 19 O 1.21291 * 120.00763 * 359.72740 * 18 17 16 20 20 N 1.34784 * 119.99774 * 179.97438 * 18 17 16 21 21 C 1.37092 * 119.99968 * 179.72830 * 20 18 17 22 22 H 1.08005 * 120.00127 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00107 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99828 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00407 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46940 * 60.00199 * 25 23 21 27 27 H 1.48496 * 109.47341 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47121 * 300.00728 * 25 23 21 29 29 C 1.47441 * 108.57087 * 335.91051 * 16 15 14 30 30 H 1.09000 * 109.47553 * 270.20793 * 1 2 3 31 31 H 1.09005 * 109.47392 * 30.21235 * 1 2 3 32 32 H 1.09009 * 109.46898 * 150.20983 * 1 2 3 33 33 H 1.07998 * 125.57521 * 359.96499 * 3 2 1 34 34 H 1.08003 * 125.80045 * 179.97438 * 6 4 3 35 35 H 0.97005 * 120.00106 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.47085 * 59.99933 * 11 10 8 37 37 H 1.09004 * 109.46894 * 299.99491 * 11 10 8 38 38 H 1.09003 * 110.98641 * 324.05592 * 14 12 11 39 39 H 1.08999 * 110.99268 * 87.86773 * 14 12 11 40 40 H 1.09004 * 110.37198 * 278.23798 * 15 14 12 41 41 H 1.09001 * 110.37498 * 155.90117 * 15 14 12 42 42 H 1.09001 * 109.46900 * 170.84975 * 17 16 15 43 43 H 1.08993 * 109.47169 * 50.84696 * 17 16 15 44 44 H 0.97005 * 119.99846 * 359.72750 * 20 18 17 45 45 H 0.96990 * 120.00373 * 180.02562 * 24 23 21 46 46 H 1.09001 * 109.89007 * 120.39254 * 29 16 15 47 47 H 1.09001 * 109.89037 * 241.42357 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0060 5 1 4.3839 1.2415 -0.0109 6 6 3.6656 -0.6901 -0.0034 7 6 2.3864 -1.1740 0.0039 8 6 1.9750 -2.5880 0.0084 9 8 0.7937 -2.8776 0.0143 10 7 2.9074 -3.5611 0.0059 11 6 2.4981 -4.9678 0.0098 12 6 3.7408 -5.8605 0.0052 13 1 4.4237 -5.5721 0.8043 14 6 4.4498 -5.8066 -1.3736 15 6 5.1731 -7.1760 -1.4072 16 7 4.2351 -8.1145 -0.7552 17 6 4.9611 -9.1503 -0.0081 18 6 5.6656 -10.0664 -0.9752 19 8 5.5683 -9.8784 -2.1695 20 7 6.4000 -11.0979 -0.5131 21 6 7.0364 -11.9347 -1.3930 22 1 6.9490 -11.7676 -2.4565 23 6 7.7939 -12.9977 -0.9167 24 7 7.8999 -13.2013 0.3772 25 14 8.6605 -14.1383 -2.1156 26 1 9.6176 -13.3564 -2.9389 27 1 9.3960 -15.1841 -1.3603 28 1 7.6565 -14.7814 -3.0008 29 6 3.3454 -7.3465 0.1351 30 1 -0.3634 0.0037 1.0276 31 1 -0.3634 0.8881 -0.5171 32 1 -0.3633 -0.8919 -0.5106 33 1 1.9867 2.1059 -0.0005 34 1 4.5664 -1.2859 -0.0072 35 1 3.8495 -3.3301 0.0008 36 1 1.8995 -5.1744 -0.8773 37 1 1.9071 -5.1717 0.9027 38 1 3.7240 -5.7284 -2.1830 39 1 5.1658 -4.9857 -1.4126 40 1 6.1081 -7.1251 -0.8493 41 1 5.3607 -7.4809 -2.4368 42 1 4.2566 -9.7271 0.5912 43 1 5.6945 -8.6795 0.6464 44 1 6.4782 -11.2481 0.4420 45 1 8.4289 -13.9430 0.7098 46 1 2.3080 -7.4823 -0.1705 47 1 3.4750 -7.6785 1.1651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753139583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:15 Heat of formation + Delta-G solvation = -25.897664 kcal Electronic energy + Delta-G solvation = -27540.931937 eV Core-core repulsion = 23531.073858 eV Total energy + Delta-G solvation = -4009.858079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53666 -39.66778 -38.86861 -37.58892 -35.03242 -33.85266 -32.73855 -32.13189 -31.17522 -30.29941 -29.17262 -27.12195 -26.85019 -25.18582 -23.99930 -22.79839 -21.06989 -20.65491 -20.18073 -19.35353 -19.17181 -18.67530 -17.85346 -16.57651 -16.48230 -15.78638 -15.56441 -15.31986 -14.73138 -14.62497 -14.39588 -14.34954 -14.12175 -13.79806 -13.74764 -13.45903 -13.30715 -13.11589 -12.93404 -12.68267 -12.62426 -12.34318 -12.02742 -11.71768 -11.66715 -11.46186 -11.21061 -11.12083 -10.93669 -10.83183 -10.60482 -10.42231 -10.18836 -9.97232 -9.45876 -9.25293 -8.90791 -8.65436 -8.40978 -7.94178 -7.83418 -6.38911 -3.79540 1.43518 2.05948 2.78910 3.10357 3.21740 3.27104 3.31640 3.38980 3.94678 4.06690 4.28255 4.42592 4.52858 4.54268 4.67700 4.73434 4.82630 5.04878 5.15280 5.21922 5.26505 5.27213 5.40600 5.45354 5.45871 5.54786 5.61956 5.70665 5.78105 5.81464 5.84799 5.86458 5.95207 5.97532 6.07444 6.22615 6.32614 6.35552 6.44941 6.49135 6.52766 7.01755 7.28940 7.31630 7.42378 7.57484 8.09234 8.20372 8.65491 9.21287 9.58013 10.10461 10.78931 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.034903 B = 0.001660 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.031337 B =16866.173402 C =17189.805064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.109 4.109 3 C -0.028 4.028 4 N -0.549 5.549 5 H 0.418 0.582 6 C 0.046 3.954 7 C -0.227 4.227 8 C 0.587 3.413 9 O -0.542 6.542 10 N -0.729 5.729 11 C 0.134 3.866 12 C -0.123 4.123 13 H 0.080 0.920 14 C -0.125 4.125 15 C 0.053 3.947 16 N -0.505 5.505 17 C 0.041 3.959 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.567 5.567 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.050 3.950 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.396 0.604 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.081 0.919 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.141 28.517 4.303 29.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.155 4.155 4 N -0.143 5.143 5 H 0.254 0.746 6 C -0.090 4.090 7 C -0.238 4.238 8 C 0.376 3.624 9 O -0.420 6.420 10 N -0.380 5.380 11 C 0.010 3.990 12 C -0.143 4.143 13 H 0.098 0.902 14 C -0.163 4.163 15 C -0.075 4.075 16 N -0.229 5.229 17 C -0.091 4.091 18 C 0.230 3.770 19 O -0.461 6.461 20 N -0.204 5.204 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.758 3.242 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.078 4.078 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.186 0.814 34 H 0.188 0.812 35 H 0.229 0.771 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.099 0.901 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.171 28.085 3.225 29.427 hybrid contribution 2.058 -0.019 0.821 2.216 sum -6.113 28.066 4.046 29.008 Atomic orbital electron populations 1.20202 0.89258 1.02662 1.01994 1.20585 0.95716 0.90332 1.04886 1.21600 0.82405 0.99280 1.12244 1.41493 1.08377 1.06692 1.57783 0.74581 1.21925 0.98518 0.83950 1.04633 1.20402 0.92692 0.92888 1.17800 1.17393 0.85379 0.83987 0.75663 1.90756 1.17210 1.83747 1.50331 1.45843 1.09421 1.06279 1.76489 1.21324 0.96062 0.78893 1.02671 1.22661 0.96806 0.96068 0.98770 0.90154 1.22850 0.99500 0.97562 0.96356 1.23025 0.93328 0.89433 1.01665 1.63252 1.19534 1.11906 1.28178 1.22117 0.97244 0.94480 0.95257 1.19758 0.83902 0.84014 0.89342 1.90506 1.65339 1.74004 1.16204 1.41858 1.43843 1.25085 1.09589 1.19646 1.25377 1.06216 0.91536 0.88014 1.25247 0.97998 0.98220 0.96513 1.69601 1.41285 1.31516 1.12087 0.85922 0.79286 0.79361 0.79665 1.19989 1.21020 1.19907 1.22826 0.98855 0.90039 0.96119 0.91813 0.92382 0.90241 0.81401 0.81169 0.77051 0.90892 0.91341 0.90365 0.91298 0.94130 0.88825 0.89393 0.93459 0.77552 0.91890 0.90121 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.97 36.01 0.36 -0.39 16 2 C -0.11 -1.01 6.35 -102.54 -0.65 -1.66 16 3 C -0.03 -0.17 11.82 -16.82 -0.20 -0.37 16 4 N -0.55 -2.52 5.90 -12.85 -0.08 -2.59 16 5 H 0.42 0.48 8.96 -40.82 -0.37 0.11 16 6 C 0.05 0.28 11.40 -16.85 -0.19 0.09 16 7 C -0.23 -2.20 6.29 -103.35 -0.65 -2.85 16 8 C 0.59 6.91 7.81 -12.60 -0.10 6.81 16 9 O -0.54 -8.36 15.32 5.25 0.08 -8.28 16 10 N -0.73 -6.67 5.46 -61.43 -0.34 -7.00 16 11 C 0.13 1.35 4.97 -4.04 -0.02 1.33 16 12 C -0.12 -1.23 2.96 -88.80 -0.26 -1.49 16 13 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 14 C -0.12 -1.37 6.44 -24.60 -0.16 -1.53 16 15 C 0.05 0.81 5.75 -2.30 -0.01 0.80 16 16 N -0.50 -8.35 4.86 -232.69 -1.13 -9.48 16 17 C 0.04 0.73 5.05 -4.98 -0.03 0.70 16 18 C 0.44 10.57 7.57 -10.98 -0.08 10.48 16 19 O -0.58 -15.68 14.62 5.55 0.08 -15.60 16 20 N -0.57 -14.44 5.29 -10.96 -0.06 -14.50 16 21 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 22 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 25 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 29 C 0.05 0.62 6.46 -2.84 -0.02 0.60 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.89 6.86 -51.92 -0.36 0.54 16 33 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.17 0.49 7.45 -52.48 -0.39 0.10 16 35 H 0.40 2.55 7.41 -40.82 -0.30 2.25 16 36 H 0.07 0.84 8.00 -51.93 -0.42 0.42 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.92 7.94 -51.93 -0.41 0.50 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.04 0.62 7.62 -51.93 -0.40 0.23 16 41 H 0.09 1.71 7.38 -51.93 -0.38 1.33 16 42 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 43 H 0.05 0.77 7.85 -51.93 -0.41 0.36 16 44 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 45 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.08 0.99 7.82 -51.93 -0.41 0.58 16 47 H 0.06 0.64 7.55 -51.93 -0.39 0.25 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -36.02 388.42 -9.15 -45.17 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -7.01 Total: 9.72 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -2.25 Total: 4.50 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.88 Total: -57.50 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: 0.16 Total: -23.88 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.02 -9.15 -45.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753139583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.273 kcal (2) G-P(sol) polarization free energy of solvation -36.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds