Wall clock time and date at job start Tue Mar 31 2020 18:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34485 * 126.83025 * 2 1 4 4 N 1.36454 * 108.85464 * 180.26479 * 3 2 1 5 5 H 0.96998 * 124.84885 * 179.73372 * 4 3 2 6 6 C 1.34651 * 110.29442 * 359.70350 * 4 3 2 7 7 C 1.36770 * 108.40308 * 0.02562 * 6 4 3 8 8 C 1.47260 * 126.94446 * 179.97438 * 7 6 4 9 9 O 1.21628 * 119.99642 * 180.02562 * 8 7 6 10 10 N 1.34769 * 120.00261 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00159 * 180.02562 * 10 8 7 12 12 C 1.53008 * 109.46986 * 179.97438 * 11 10 8 13 13 H 1.09002 * 110.62677 * 51.89411 * 12 11 10 14 14 C 1.55135 * 110.70624 * 288.59761 * 12 11 10 15 15 C 1.54903 * 101.65451 * 205.96860 * 14 12 11 16 16 N 1.47842 * 104.79653 * 37.06399 * 15 14 12 17 17 C 1.46904 * 111.00132 * 213.63866 * 16 15 14 18 18 C 1.50697 * 109.46892 * 290.84315 * 17 16 15 19 19 O 1.21291 * 120.00763 * 359.72740 * 18 17 16 20 20 N 1.34784 * 119.99774 * 179.97438 * 18 17 16 21 21 C 1.37092 * 119.99968 * 179.72830 * 20 18 17 22 22 H 1.08005 * 120.00127 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00107 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99828 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00407 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46940 * 60.00199 * 25 23 21 27 27 H 1.48496 * 109.47341 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47121 * 300.00728 * 25 23 21 29 29 C 1.47441 * 108.57087 * 335.91051 * 16 15 14 30 30 H 1.09000 * 109.47553 * 270.20793 * 1 2 3 31 31 H 1.09005 * 109.47392 * 30.21235 * 1 2 3 32 32 H 1.09009 * 109.46898 * 150.20983 * 1 2 3 33 33 H 1.07998 * 125.57521 * 359.96499 * 3 2 1 34 34 H 1.08003 * 125.80045 * 179.97438 * 6 4 3 35 35 H 0.97005 * 120.00106 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.47085 * 59.99933 * 11 10 8 37 37 H 1.09004 * 109.46894 * 299.99491 * 11 10 8 38 38 H 1.09003 * 110.98641 * 324.05592 * 14 12 11 39 39 H 1.08999 * 110.99268 * 87.86773 * 14 12 11 40 40 H 1.09004 * 110.37198 * 278.23798 * 15 14 12 41 41 H 1.09001 * 110.37498 * 155.90117 * 15 14 12 42 42 H 1.09001 * 109.46900 * 170.84975 * 17 16 15 43 43 H 1.08993 * 109.47169 * 50.84696 * 17 16 15 44 44 H 0.97005 * 119.99846 * 359.72750 * 20 18 17 45 45 H 0.96990 * 120.00373 * 180.02562 * 24 23 21 46 46 H 1.09001 * 109.89007 * 120.39254 * 29 16 15 47 47 H 1.09001 * 109.89037 * 241.42357 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0060 5 1 4.3839 1.2415 -0.0109 6 6 3.6656 -0.6901 -0.0034 7 6 2.3864 -1.1740 0.0039 8 6 1.9750 -2.5880 0.0084 9 8 0.7937 -2.8776 0.0143 10 7 2.9074 -3.5611 0.0059 11 6 2.4981 -4.9678 0.0098 12 6 3.7408 -5.8605 0.0052 13 1 4.4237 -5.5721 0.8043 14 6 4.4498 -5.8066 -1.3736 15 6 5.1731 -7.1760 -1.4072 16 7 4.2351 -8.1145 -0.7552 17 6 4.9611 -9.1503 -0.0081 18 6 5.6656 -10.0664 -0.9752 19 8 5.5683 -9.8784 -2.1695 20 7 6.4000 -11.0979 -0.5131 21 6 7.0364 -11.9347 -1.3930 22 1 6.9490 -11.7676 -2.4565 23 6 7.7939 -12.9977 -0.9167 24 7 7.8999 -13.2013 0.3772 25 14 8.6605 -14.1383 -2.1156 26 1 9.6176 -13.3564 -2.9389 27 1 9.3960 -15.1841 -1.3603 28 1 7.6565 -14.7814 -3.0008 29 6 3.3454 -7.3465 0.1351 30 1 -0.3634 0.0037 1.0276 31 1 -0.3634 0.8881 -0.5171 32 1 -0.3633 -0.8919 -0.5106 33 1 1.9867 2.1059 -0.0005 34 1 4.5664 -1.2859 -0.0072 35 1 3.8495 -3.3301 0.0008 36 1 1.8995 -5.1744 -0.8773 37 1 1.9071 -5.1717 0.9027 38 1 3.7240 -5.7284 -2.1830 39 1 5.1658 -4.9857 -1.4126 40 1 6.1081 -7.1251 -0.8493 41 1 5.3607 -7.4809 -2.4368 42 1 4.2566 -9.7271 0.5912 43 1 5.6945 -8.6795 0.6464 44 1 6.4782 -11.2481 0.4420 45 1 8.4289 -13.9430 0.7098 46 1 2.3080 -7.4823 -0.1705 47 1 3.4750 -7.6785 1.1651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753139583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:14 Heat of formation + Delta-G solvation = -54.342330 kcal Electronic energy + Delta-G solvation = -27542.165390 eV Core-core repulsion = 23531.073858 eV Total energy + Delta-G solvation = -4011.091532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.04920 -40.79205 -40.03950 -39.12799 -36.15340 -35.74276 -33.40260 -33.30440 -33.01882 -31.10753 -30.08055 -28.55646 -27.42162 -26.57313 -25.44187 -23.52475 -22.27673 -21.53904 -20.97285 -20.76602 -20.06728 -19.86747 -19.14081 -17.92377 -17.27512 -17.13312 -16.59978 -16.47643 -16.21653 -16.01288 -15.59143 -15.48157 -15.19801 -14.81682 -14.53585 -14.47862 -14.33550 -14.23103 -13.93993 -13.58891 -13.56730 -13.52105 -13.26366 -13.13719 -12.98169 -12.83056 -12.42238 -12.34113 -12.26904 -12.11289 -12.06625 -11.82043 -11.62464 -11.45973 -10.87206 -10.27983 -10.08615 -9.99111 -9.49068 -9.15166 -9.14861 -8.44961 -5.93522 0.83409 1.40295 1.41955 1.52607 1.52834 2.08201 2.25079 2.30779 2.51898 2.63070 2.87322 3.21750 3.41406 3.61505 3.67214 3.94168 4.02945 4.11259 4.30408 4.33240 4.35604 4.37434 4.40255 4.49486 4.52121 4.58324 4.66903 4.72711 4.85655 4.89715 4.91477 4.94406 4.99217 5.08624 5.18769 5.21699 5.32401 5.37137 5.41926 5.55225 5.85657 5.92094 6.00146 6.08859 6.18967 6.63201 6.68530 6.76566 7.14966 7.42348 7.58826 8.15355 8.72244 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.034903 B = 0.001660 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.031337 B =16866.173402 C =17189.805064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.153 4.153 3 C -0.013 4.013 4 N -0.534 5.534 5 H 0.438 0.562 6 C 0.070 3.930 7 C -0.272 4.272 8 C 0.581 3.419 9 O -0.593 6.593 10 N -0.714 5.714 11 C 0.142 3.858 12 C -0.103 4.103 13 H 0.105 0.895 14 C -0.112 4.112 15 C 0.051 3.949 16 N -0.533 5.533 17 C 0.054 3.946 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.576 5.576 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.274 1.274 29 C 0.048 3.952 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.198 0.802 34 H 0.207 0.793 35 H 0.412 0.588 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.041 0.959 41 H 0.053 0.947 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.078 0.922 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.394 30.565 5.457 31.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.159 4.159 3 C -0.141 4.141 4 N -0.129 5.129 5 H 0.278 0.722 6 C -0.068 4.068 7 C -0.282 4.282 8 C 0.372 3.628 9 O -0.475 6.475 10 N -0.366 5.366 11 C 0.017 3.983 12 C -0.123 4.123 13 H 0.123 0.877 14 C -0.150 4.150 15 C -0.077 4.077 16 N -0.257 5.257 17 C -0.077 4.077 18 C 0.228 3.772 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.463 4.463 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.199 1.199 29 C -0.080 4.080 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.215 0.785 34 H 0.224 0.776 35 H 0.249 0.751 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.119 0.881 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.125 0.875 43 H 0.090 0.910 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.377 30.168 4.407 31.148 hybrid contribution 1.508 -0.598 0.441 1.681 sum -4.870 29.570 4.847 30.358 Atomic orbital electron populations 1.20096 0.90135 1.01958 1.01445 1.20824 0.95926 0.91651 1.07531 1.21954 0.82531 0.99765 1.09845 1.41564 1.08700 1.06597 1.56043 0.72169 1.22354 0.98249 0.84649 1.01569 1.20421 0.94639 0.91860 1.21328 1.17831 0.84941 0.85275 0.74794 1.90724 1.19316 1.84581 1.52911 1.45658 1.09993 1.05411 1.75575 1.21141 0.95892 0.79529 1.01696 1.22505 0.96718 0.94299 0.98732 0.87692 1.22780 0.99537 0.95956 0.96730 1.22930 0.93927 0.91518 0.99280 1.63120 1.20098 1.12886 1.29613 1.21973 0.97788 0.94121 0.93853 1.20852 0.82776 0.83734 0.89878 1.90481 1.66399 1.74902 1.18493 1.41928 1.44397 1.25564 1.09453 1.19613 1.27521 1.08104 0.91058 0.90461 1.26017 0.97984 0.98959 0.98291 1.69662 1.41372 1.31957 1.13168 0.84998 0.78144 0.77548 0.77690 1.19682 1.19440 1.19911 1.22876 0.97714 0.91168 0.96234 0.92379 0.90427 0.93469 0.78516 0.77642 0.75139 0.92742 0.91695 0.91378 0.88147 0.94029 0.92877 0.87537 0.91012 0.77046 0.91340 0.90391 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.49 9.97 71.24 0.71 -0.78 16 2 C -0.15 -2.75 6.35 -18.52 -0.12 -2.86 16 3 C -0.01 -0.12 11.82 83.11 0.98 0.86 16 4 N -0.53 -2.88 5.90 -194.56 -1.15 -4.03 16 5 H 0.44 -0.98 8.96 -92.71 -0.83 -1.81 16 6 C 0.07 0.62 11.40 83.92 0.96 1.58 16 7 C -0.27 -4.99 6.29 -19.04 -0.12 -5.11 16 8 C 0.58 13.64 7.81 86.62 0.68 14.32 16 9 O -0.59 -19.32 15.32 -4.12 -0.06 -19.38 16 10 N -0.71 -11.91 5.46 -466.52 -2.55 -14.46 16 11 C 0.14 2.69 4.97 86.38 0.43 3.12 16 12 C -0.10 -1.79 2.96 -9.61 -0.03 -1.82 16 13 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 14 C -0.11 -2.27 6.44 31.98 0.21 -2.06 16 15 C 0.05 1.55 5.75 86.77 0.50 2.05 16 16 N -0.53 -17.27 4.86 -890.11 -4.33 -21.59 16 17 C 0.05 1.88 5.05 85.56 0.43 2.31 16 18 C 0.44 21.28 7.57 87.65 0.66 21.94 16 19 O -0.62 -34.77 14.62 -3.06 -0.04 -34.81 16 20 N -0.58 -29.86 5.29 -306.97 -1.62 -31.48 16 21 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 22 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 24 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 25 Si 0.99 43.24 29.55 68.60 2.03 45.26 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 29 C 0.05 1.10 6.46 86.65 0.56 1.66 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.05 1.17 6.86 -2.38 -0.02 1.16 16 33 H 0.20 0.63 8.06 -2.91 -0.02 0.61 16 34 H 0.21 0.17 7.45 -2.91 -0.02 0.14 16 35 H 0.41 3.95 7.41 -92.70 -0.69 3.26 16 36 H 0.05 1.26 8.00 -2.39 -0.02 1.24 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.54 7.94 -2.39 -0.02 1.52 16 39 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.04 1.24 7.62 -2.38 -0.02 1.22 16 41 H 0.05 2.03 7.38 -2.39 -0.02 2.01 16 42 H 0.11 3.30 8.03 -2.39 -0.02 3.29 16 43 H 0.07 2.16 7.85 -2.39 -0.02 2.14 16 44 H 0.40 19.42 7.90 -92.70 -0.73 18.68 16 45 H 0.28 14.08 8.31 -92.72 -0.77 13.31 16 46 H 0.08 1.84 7.82 -2.39 -0.02 1.82 16 47 H 0.07 1.48 7.55 -2.39 -0.02 1.46 16 Total: -1.00 -83.35 388.42 -1.54 -84.89 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -1.23 Total: 28.51 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 7.13 Total: 16.66 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -9.36 Total: -121.13 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: -0.11 Total: -54.19 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -83.35 -1.54 -84.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753139583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.548 kcal (2) G-P(sol) polarization free energy of solvation -83.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds