Wall clock time and date at job start Tue Mar 31 2020 19:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 112.99797 * 2 1 4 4 N 1.46503 * 109.47318 * 48.17581 * 3 2 1 5 5 C 1.34842 * 126.59625 * 124.99760 * 4 3 2 6 6 C 1.36661 * 106.82589 * 179.97438 * 5 4 3 7 7 C 1.47441 * 125.77486 * 179.97438 * 6 5 4 8 8 O 1.21626 * 120.00114 * 353.47493 * 7 6 5 9 9 N 1.34775 * 119.99994 * 173.47695 * 7 6 5 10 10 C 1.36955 * 119.99965 * 3.79156 * 9 7 6 11 11 H 1.07999 * 120.00425 * 117.84614 * 10 9 7 12 12 C 1.38992 * 119.99800 * 297.84772 * 10 9 7 13 13 N 1.31399 * 120.00069 * 351.32343 * 12 10 9 14 14 Si 1.86799 * 120.00208 * 171.32761 * 12 10 9 15 15 H 1.48505 * 109.47282 * 59.99527 * 14 12 10 16 16 H 1.48500 * 109.47320 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46901 * 299.99838 * 14 12 10 18 18 C 1.46500 * 120.00018 * 183.78471 * 9 7 6 19 19 C 1.55228 * 110.58257 * 231.85823 * 18 9 7 20 20 C 1.54897 * 102.58728 * 203.34160 * 19 18 9 21 21 C 1.54264 * 104.31064 * 37.93591 * 20 19 18 22 22 C 1.53870 * 106.60175 * 336.32029 * 21 20 19 23 23 N 1.34416 * 108.44757 * 0.23217 * 6 5 4 24 24 N 1.28757 * 109.52763 * 359.60688 * 23 6 5 25 25 C 1.54038 * 113.92514 * 131.93206 * 2 1 3 26 26 O 1.44177 * 85.51624 * 91.66092 * 25 2 1 27 27 C 1.44179 * 93.34139 * 24.19237 * 26 25 2 28 28 H 1.08999 * 109.47483 * 60.00168 * 1 2 3 29 29 H 1.09005 * 109.46917 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47085 * 299.99728 * 1 2 3 31 31 H 1.09001 * 109.47455 * 288.17203 * 3 2 1 32 32 H 1.09006 * 109.47188 * 168.17112 * 3 2 1 33 33 H 1.08005 * 126.58073 * 359.96711 * 5 4 3 34 34 H 0.97002 * 120.00619 * 180.02562 * 13 12 10 35 35 H 1.08999 * 110.43663 * 354.45250 * 18 9 7 36 36 H 1.08996 * 110.90197 * 85.05252 * 19 18 9 37 37 H 1.09002 * 110.76970 * 321.56992 * 19 18 9 38 38 H 1.08998 * 110.48577 * 279.18785 * 20 19 18 39 39 H 1.09002 * 110.48418 * 156.67642 * 20 19 18 40 40 H 1.08996 * 110.03238 * 95.61197 * 21 20 19 41 41 H 1.09003 * 110.02790 * 216.98590 * 21 20 19 42 42 H 1.09001 * 110.03121 * 119.28534 * 22 21 20 43 43 H 1.08998 * 110.03408 * 240.67063 * 22 21 20 44 44 H 1.08997 * 113.86569 * 205.80709 * 25 2 1 45 45 H 1.09000 * 113.86323 * 337.51563 * 25 2 1 46 46 H 1.08999 * 113.86102 * 221.65927 * 27 26 25 47 47 H 1.08996 * 113.98159 * 89.96856 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4083 0.0000 4 7 1.4707 2.2178 1.0293 5 6 2.0743 2.8886 2.0312 6 6 1.0859 3.5029 2.7477 7 6 1.2835 4.3490 3.9389 8 8 2.3897 4.4545 4.4332 9 7 0.2382 5.0056 4.4800 10 6 -1.0207 4.8261 3.9715 11 1 -1.7990 4.4068 4.5917 12 6 -1.2967 5.1838 2.6570 13 7 -0.4056 5.8478 1.9558 14 14 -2.9344 4.7205 1.8871 15 1 -4.0391 5.3358 2.6658 16 1 -2.9804 5.2137 0.4871 17 1 -3.0854 3.2432 1.8962 18 6 0.4486 5.9111 5.6123 19 6 -0.5205 5.5658 6.7746 20 6 -0.5990 6.9006 7.5565 21 6 -0.5908 7.9858 6.4602 22 6 0.0754 7.3568 5.2240 23 7 -0.0973 3.2004 2.1862 24 7 0.0934 2.4442 1.1616 25 6 2.1547 -0.9409 1.0475 26 8 2.1471 -1.9296 -0.0018 27 6 2.1520 -0.9397 -1.0501 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9747 1.8681 -0.9764 32 1 3.1957 1.3498 0.2107 33 1 3.1351 2.9321 2.2293 34 1 -0.5982 6.0977 1.0386 35 1 1.4834 5.8623 5.9514 36 1 -0.1096 4.7745 7.4015 37 1 -1.5011 5.2853 6.3899 38 1 0.2665 7.0115 8.2097 39 1 -1.5214 6.9500 8.1352 40 1 -1.6118 8.2845 6.2228 41 1 -0.0174 8.8503 6.7949 42 1 -0.6224 7.3501 4.3866 43 1 0.9723 7.9161 4.9579 44 1 3.1538 -0.6443 1.3666 45 1 1.4916 -1.1763 1.8800 46 1 1.4869 -1.1742 -1.8811 47 1 3.1494 -0.6415 -1.3731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184922555.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:17 Heat of formation + Delta-G solvation = 70.825117 kcal Electronic energy + Delta-G solvation = -30382.817033 eV Core-core repulsion = 26377.153168 eV Total energy + Delta-G solvation = -4005.663864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.44534 -40.61050 -38.61214 -36.51878 -34.79044 -33.94074 -31.62433 -31.22269 -29.73943 -27.89056 -27.47258 -26.91130 -26.78949 -25.45160 -24.68939 -22.38593 -21.35175 -19.90125 -19.85281 -19.14350 -18.99572 -17.43376 -16.54235 -16.22071 -15.97592 -15.66622 -15.55704 -15.11141 -14.78725 -14.51954 -14.20763 -13.80857 -13.74230 -13.48537 -13.22672 -12.98119 -12.57423 -12.48996 -12.35414 -12.17876 -11.84520 -11.52234 -11.36848 -11.22875 -11.10009 -10.94581 -10.77722 -10.59262 -10.54946 -10.40813 -10.31724 -10.21703 -9.93185 -9.83167 -9.74090 -9.50298 -9.42165 -8.77763 -8.36771 -8.10044 -7.04271 -6.15467 -4.06716 1.99648 2.66772 2.95722 3.39716 3.40675 3.45232 3.49910 3.94530 4.29458 4.34809 4.64069 4.69521 4.78943 4.85349 5.00951 5.05600 5.18645 5.23206 5.28971 5.37922 5.40719 5.48532 5.56778 5.68520 5.71050 5.81785 5.85099 5.93914 5.96998 6.10353 6.22223 6.24111 6.25591 6.26845 6.34857 6.44515 6.50508 6.58087 6.60666 6.79312 6.97317 7.05118 7.13584 7.16534 7.42143 7.67034 8.16205 8.72302 9.03738 9.22459 9.66370 10.07632 10.89705 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017540 B = 0.003768 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.992720 B = 7429.523701 C = 8301.411790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.138 4.138 3 C 0.136 3.864 4 N -0.378 5.378 5 C 0.050 3.950 6 C -0.021 4.021 7 C 0.586 3.414 8 O -0.613 6.613 9 N -0.424 5.424 10 C -0.345 4.345 11 H 0.077 0.923 12 C 0.103 3.897 13 N -0.867 5.867 14 Si 0.917 3.083 15 H -0.284 1.284 16 H -0.292 1.292 17 H -0.263 1.263 18 C 0.136 3.864 19 C -0.127 4.127 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.123 4.123 23 N -0.137 5.137 24 N -0.108 5.108 25 C 0.043 3.957 26 O -0.377 6.377 27 C 0.048 3.952 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.186 0.814 34 H 0.264 0.736 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.956 -6.830 -2.993 8.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.139 4.139 3 C 0.013 3.987 4 N -0.164 5.164 5 C -0.105 4.105 6 C -0.160 4.160 7 C 0.374 3.626 8 O -0.498 6.498 9 N -0.141 5.141 10 C -0.473 4.473 11 H 0.094 0.906 12 C -0.106 4.106 13 N -0.502 5.502 14 Si 0.744 3.256 15 H -0.210 1.210 16 H -0.218 1.218 17 H -0.188 1.188 18 C 0.032 3.968 19 C -0.165 4.165 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.162 4.162 23 N -0.009 5.009 24 N -0.088 5.088 25 C -0.033 4.033 26 O -0.295 6.295 27 C -0.030 4.030 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.203 0.797 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.108 0.892 43 H 0.066 0.934 44 H 0.100 0.900 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.150 -7.262 -3.512 8.660 hybrid contribution 0.319 0.375 -0.527 0.721 sum 3.469 -6.887 -4.039 8.705 Atomic orbital electron populations 1.21777 0.90221 1.01944 1.05081 1.24038 0.99602 0.93585 0.96720 1.21846 0.96259 0.89573 0.91004 1.50170 1.08114 1.36289 1.21839 1.23080 1.00253 0.96700 0.90455 1.21172 0.87768 1.05457 1.01567 1.17133 0.84386 0.79223 0.81839 1.90598 1.25658 1.68820 1.64764 1.42930 1.06837 1.36070 1.28256 1.18799 0.87622 1.44667 0.96261 0.90559 1.25306 0.97469 0.90926 0.96868 1.69899 1.35290 1.35225 1.09783 0.86235 0.81890 0.79906 0.77535 1.21042 1.21831 1.18804 1.21885 0.98130 0.89435 0.87304 1.22786 1.01459 0.95909 0.96358 1.22269 1.00452 0.95825 0.97315 1.22065 1.00298 0.97363 0.95944 1.22331 1.00465 0.95187 0.98188 1.75160 1.22555 1.02699 1.00508 1.81894 0.90609 1.18354 1.17898 1.24133 1.00390 0.86331 0.92477 1.89685 1.95703 1.27324 1.16831 1.24022 1.00313 0.86254 0.92372 0.91714 0.92374 0.89008 0.88970 0.88407 0.79693 0.92659 0.90304 0.92746 0.90131 0.92463 0.92516 0.92432 0.93095 0.89210 0.93396 0.89957 0.88842 0.88707 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 8.22 37.16 0.31 -1.41 16 2 C -0.14 -1.50 1.23 -153.43 -0.19 -1.69 16 3 C 0.14 1.52 6.10 -4.04 -0.02 1.50 16 4 N -0.38 -6.28 3.65 -61.03 -0.22 -6.50 16 5 C 0.05 0.93 11.28 -16.80 -0.19 0.74 16 6 C -0.02 -0.49 5.82 -83.56 -0.49 -0.98 16 7 C 0.59 15.01 7.19 -12.51 -0.09 14.92 16 8 O -0.61 -16.23 16.24 5.25 0.09 -16.15 16 9 N -0.42 -10.56 2.37 -106.97 -0.25 -10.81 16 10 C -0.35 -8.76 6.29 -14.98 -0.09 -8.85 16 11 H 0.08 1.94 6.95 -52.49 -0.36 1.57 16 12 C 0.10 2.64 2.83 -17.46 -0.05 2.59 16 13 N -0.87 -23.26 11.96 55.50 0.66 -22.60 16 14 Si 0.92 21.41 28.58 -169.99 -4.86 16.55 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 17 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 18 C 0.14 3.00 3.25 -66.08 -0.22 2.79 16 19 C -0.13 -2.38 6.41 -24.55 -0.16 -2.54 16 20 C -0.12 -1.90 6.82 -25.07 -0.17 -2.07 16 21 C -0.12 -1.99 6.80 -25.62 -0.17 -2.16 16 22 C -0.12 -2.56 6.43 -25.61 -0.16 -2.73 16 23 N -0.14 -3.24 6.69 32.84 0.22 -3.02 16 24 N -0.11 -2.22 10.45 60.35 0.63 -1.59 16 25 C 0.04 0.48 8.36 37.61 0.31 0.79 16 26 O -0.38 -4.52 12.37 -35.23 -0.44 -4.96 16 27 C 0.05 0.43 8.36 37.61 0.31 0.74 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.09 1.48 5.60 -51.93 -0.29 1.19 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.10 0.81 7.87 -51.93 -0.41 0.40 16 33 H 0.19 2.89 8.06 -52.48 -0.42 2.46 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.08 1.81 6.99 -51.93 -0.36 1.45 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.60 6.54 -51.93 -0.34 1.26 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 2.14 7.17 -51.93 -0.37 1.77 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.08 0.77 7.96 -51.93 -0.41 0.36 16 45 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 46 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 47 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -31.20 372.00 -6.81 -38.01 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.17 Total: 3.84 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.07 Total: 1.64 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 1.04 Total: -44.53 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.35 Total: -21.11 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.86 Total: 16.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.20 -6.81 -38.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184922555.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.832 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds