Wall clock time and date at job start Tue Mar 31 2020 18:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30848 * 125.76849 * 2 1 4 4 N 1.40070 * 108.42469 * 180.02562 * 3 2 1 5 5 C 1.46500 * 126.10268 * 180.02562 * 4 3 2 6 6 C 1.35855 * 107.80134 * 359.97438 * 4 3 2 7 7 N 1.39197 * 126.27087 * 179.97438 * 6 4 3 8 8 C 1.34773 * 120.00196 * 300.90823 * 7 6 4 9 9 O 1.21397 * 120.00032 * 6.52120 * 8 7 6 10 10 C 1.49307 * 120.00376 * 186.52431 * 8 7 6 11 11 O 1.21367 * 119.99919 * 353.30652 * 10 8 7 12 12 N 1.34776 * 120.00322 * 173.30674 * 10 8 7 13 13 C 1.46921 * 120.62843 * 356.02828 * 12 10 8 14 14 C 1.53193 * 108.77447 * 233.63063 * 13 12 10 15 15 C 1.53038 * 109.34082 * 305.38065 * 14 13 12 16 16 C 1.53044 * 109.53830 * 61.31609 * 15 14 13 17 17 H 1.09004 * 109.49476 * 58.65123 * 16 15 14 18 18 C 1.50693 * 109.49832 * 178.71656 * 16 15 14 19 19 H 1.08006 * 120.00078 * 359.93627 * 18 16 15 20 20 C 1.37875 * 120.00210 * 180.21360 * 18 16 15 21 21 N 1.31517 * 119.99873 * 359.72358 * 20 18 16 22 22 Si 1.86798 * 120.00267 * 179.72319 * 20 18 16 23 23 H 1.48502 * 109.47245 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47268 * 119.99773 * 22 20 18 25 25 H 1.48501 * 109.47380 * 239.99536 * 22 20 18 26 26 C 1.46926 * 120.63216 * 176.04960 * 12 10 8 27 27 C 1.36212 * 107.45572 * 0.22782 * 6 4 3 28 28 C 1.50705 * 126.06819 * 179.76693 * 27 6 4 29 29 H 1.08998 * 109.46829 * 90.03362 * 1 2 3 30 30 H 1.09001 * 109.46828 * 210.02648 * 1 2 3 31 31 H 1.08998 * 109.47728 * 330.02683 * 1 2 3 32 32 H 1.09004 * 109.46513 * 273.96748 * 5 4 3 33 33 H 1.09001 * 109.47249 * 33.96037 * 5 4 3 34 34 H 1.08997 * 109.47933 * 153.96376 * 5 4 3 35 35 H 0.97004 * 120.00070 * 120.90882 * 7 6 4 36 36 H 1.08999 * 109.58867 * 353.41667 * 13 12 10 37 37 H 1.09001 * 109.58709 * 113.70121 * 13 12 10 38 38 H 1.08995 * 109.50051 * 65.31582 * 14 13 12 39 39 H 1.09006 * 109.49975 * 185.41584 * 14 13 12 40 40 H 1.08999 * 109.43340 * 301.31545 * 15 14 13 41 41 H 1.09004 * 109.49081 * 181.35539 * 15 14 13 42 42 H 0.97001 * 120.00239 * 180.02562 * 21 20 18 43 43 H 1.09009 * 109.58408 * 6.58549 * 26 12 10 44 44 H 1.08998 * 109.70487 * 246.22797 * 26 12 10 45 45 H 1.09001 * 109.46852 * 90.00890 * 28 27 6 46 46 H 1.08999 * 109.47094 * 210.00084 * 28 27 6 47 47 H 1.08995 * 109.47308 * 330.00404 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2718 1.0617 0.0000 4 7 3.6088 0.6441 -0.0006 5 6 4.7856 1.5166 -0.0003 6 6 3.6197 -0.7144 -0.0004 7 7 4.7484 -1.5289 -0.0013 8 6 5.6448 -1.4372 -1.0036 9 8 5.5315 -0.5661 -1.8414 10 6 6.7771 -2.4071 -1.0836 11 8 6.9616 -3.2001 -0.1835 12 7 7.5944 -2.4020 -2.1552 13 6 7.3332 -1.5081 -3.2916 14 6 7.2895 -2.3427 -4.5755 15 6 8.5820 -3.1530 -4.6975 16 6 8.7035 -4.1052 -3.5056 17 1 7.8382 -4.7676 -3.4794 18 6 9.9605 -4.9250 -3.6428 19 1 10.6079 -4.7823 -4.4954 20 6 10.2812 -5.8612 -2.6828 21 7 9.4929 -6.0351 -1.6446 22 14 11.8354 -6.8828 -2.8569 23 1 12.5441 -6.4974 -4.1037 24 1 12.7208 -6.6399 -1.6896 25 1 11.4774 -8.3228 -2.9153 26 6 8.7632 -3.2906 -2.2096 27 6 2.3236 -1.1333 -0.0048 28 6 1.8540 -2.5653 -0.0112 29 1 -0.3633 -0.0006 -1.0277 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3634 0.8902 0.5134 32 1 5.0349 1.7908 -1.0254 33 1 4.5700 2.4174 0.5745 34 1 5.6276 0.9911 0.4502 35 1 4.8899 -2.1625 0.7194 36 1 6.3761 -1.0063 -3.1493 37 1 8.1281 -0.7657 -3.3627 38 1 6.4373 -3.0212 -4.5395 39 1 7.1923 -1.6811 -5.4364 40 1 9.4354 -2.4750 -4.7091 41 1 8.5639 -3.7295 -5.6225 42 1 9.7187 -6.6935 -0.9690 43 1 8.7497 -3.9650 -1.3532 44 1 9.6773 -2.6971 -2.1928 45 1 1.7384 -2.9143 1.0149 46 1 0.8963 -2.6314 -0.5275 47 1 2.5876 -3.1860 -0.5257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595086791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:46 Heat of formation + Delta-G solvation = 1.437980 kcal Electronic energy + Delta-G solvation = -29702.541922 eV Core-core repulsion = 25693.869206 eV Total energy + Delta-G solvation = -4008.672716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.87373 -41.78802 -39.87658 -38.62253 -36.51246 -35.20110 -35.15696 -33.52284 -32.06007 -31.61317 -30.57363 -28.49882 -27.47656 -26.84861 -25.55049 -24.80063 -23.57584 -22.20257 -21.40614 -20.76582 -20.46583 -19.02264 -18.49310 -18.33862 -17.58336 -17.30736 -16.73178 -16.49325 -16.34231 -16.24327 -15.62594 -15.26973 -14.98858 -14.70287 -14.59650 -14.50096 -14.41138 -14.08916 -13.95990 -13.68890 -13.56245 -13.48493 -13.27342 -13.13269 -12.90995 -12.90695 -12.78643 -12.50915 -12.31829 -12.18907 -11.95979 -11.75563 -11.66590 -11.25650 -11.16531 -11.00750 -10.56148 -10.24665 -10.04515 -9.62797 -9.27874 -8.12423 -6.28524 -0.00321 0.57102 0.95218 1.40260 1.43190 1.47236 1.54378 1.61652 1.99638 2.36774 2.43867 3.06666 3.16781 3.43098 3.98848 4.05315 4.11275 4.14054 4.27304 4.28400 4.32282 4.47458 4.52903 4.55816 4.58388 4.70071 4.77988 4.86101 4.91634 4.96590 4.97371 5.03668 5.09227 5.11667 5.16854 5.20382 5.21755 5.29757 5.39370 5.54940 5.62991 5.71629 5.84058 5.91134 5.93554 6.25002 6.32654 6.48682 6.64004 6.79269 6.86107 7.41422 8.91599 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021143 B = 0.002827 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.985424 B = 9903.352232 C =10335.264365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.077 3.923 3 N -0.302 5.302 4 N -0.373 5.373 5 C 0.103 3.897 6 C 0.278 3.722 7 N -0.617 5.617 8 C 0.530 3.470 9 O -0.497 6.497 10 C 0.494 3.506 11 O -0.548 6.548 12 N -0.568 5.568 13 C 0.060 3.940 14 C -0.125 4.125 15 C -0.107 4.107 16 C 0.039 3.961 17 H -0.009 1.009 18 C -0.534 4.534 19 H 0.062 0.938 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.957 3.043 23 H -0.264 1.264 24 H -0.281 1.281 25 H -0.283 1.283 26 C 0.121 3.879 27 C -0.232 4.232 28 C -0.073 4.073 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.437 0.563 36 H 0.144 0.856 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.262 0.738 43 H 0.088 0.912 44 H 0.049 0.951 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.341 13.207 3.306 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 N -0.127 5.127 4 N -0.158 5.158 5 C -0.038 4.038 6 C 0.060 3.940 7 N -0.271 5.271 8 C 0.313 3.687 9 O -0.372 6.372 10 C 0.276 3.724 11 O -0.427 6.427 12 N -0.299 5.299 13 C -0.060 4.060 14 C -0.163 4.163 15 C -0.145 4.145 16 C 0.020 3.980 17 H 0.009 0.991 18 C -0.573 4.573 19 H 0.080 0.920 20 C -0.187 4.187 21 N -0.551 5.551 22 Si 0.783 3.217 23 H -0.188 1.188 24 H -0.207 1.207 25 H -0.209 1.209 26 C 0.000 4.000 27 C -0.245 4.245 28 C -0.130 4.130 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.099 0.901 35 H 0.279 0.721 36 H 0.160 0.840 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.097 0.903 46 H 0.106 0.894 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.098 14.647 3.305 21.294 hybrid contribution 1.525 -1.989 0.418 2.541 sum -13.573 12.658 3.723 18.930 Atomic orbital electron populations 1.20350 0.83625 1.04724 1.04172 1.22643 0.98602 0.89049 0.98506 1.77319 0.85639 1.23083 1.26677 1.48934 1.06340 1.03523 1.57001 1.21968 0.83025 0.94573 1.04193 1.17797 0.87649 0.82612 1.05950 1.42329 1.19939 1.38888 1.25894 1.20342 0.82581 0.84534 0.81245 1.90428 1.73968 1.34963 1.37817 1.19925 0.83809 0.84794 0.83893 1.90789 1.72679 1.40014 1.39221 1.48460 1.25733 1.38858 1.16889 1.23138 1.06634 0.91918 0.84328 1.21902 0.97651 0.98913 0.97846 1.21558 0.97036 0.97647 0.98210 1.18907 0.95477 0.92544 0.91098 0.99092 1.21491 1.08134 1.19891 1.07740 0.92006 1.25845 0.99755 0.98071 0.95020 1.70046 1.38530 1.34989 1.11530 0.85518 0.79628 0.78328 0.78260 1.18756 1.20718 1.20886 1.22013 0.83608 0.90990 1.03423 1.20069 0.89441 0.98616 1.16384 1.20150 1.01775 0.88246 1.02870 0.89337 0.88217 0.90151 0.90278 0.87604 0.90076 0.72057 0.83957 0.90432 0.93386 0.88327 0.92313 0.92799 0.92917 0.89385 0.93255 0.90271 0.89436 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.11 71.24 0.72 -0.18 16 2 C 0.08 1.69 7.20 43.06 0.31 2.00 16 3 N -0.30 -7.83 12.56 -47.49 -0.60 -8.43 16 4 N -0.37 -9.59 3.98 -366.12 -1.46 -11.04 16 5 C 0.10 2.14 9.94 127.77 1.27 3.41 16 6 C 0.28 7.19 6.68 131.25 0.88 8.07 16 7 N -0.62 -16.15 5.18 -309.58 -1.60 -17.75 16 8 C 0.53 16.32 7.25 87.23 0.63 16.95 16 9 O -0.50 -15.36 11.33 -3.39 -0.04 -15.40 16 10 C 0.49 19.02 7.75 87.22 0.68 19.69 16 11 O -0.55 -24.44 15.91 -3.30 -0.05 -24.49 16 12 N -0.57 -22.62 2.97 -820.65 -2.44 -25.06 16 13 C 0.06 1.95 6.10 86.36 0.53 2.48 16 14 C -0.13 -4.03 6.08 30.67 0.19 -3.84 16 15 C -0.11 -4.17 5.11 30.62 0.16 -4.01 16 16 C 0.04 1.92 2.25 -11.46 -0.03 1.90 16 17 H -0.01 -0.52 8.14 -2.38 -0.02 -0.53 16 18 C -0.53 -28.66 8.56 25.60 0.22 -28.44 16 19 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 20 C 0.01 0.70 5.31 84.65 0.45 1.15 16 21 N -0.91 -53.09 11.40 21.45 0.24 -52.85 16 22 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 C 0.12 5.79 5.41 86.36 0.47 6.26 16 27 C -0.23 -5.30 6.12 -19.98 -0.12 -5.42 16 28 C -0.07 -1.28 9.98 71.24 0.71 -0.57 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 0.86 7.91 -2.39 -0.02 0.84 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.70 7.75 -2.39 -0.02 1.68 16 33 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 1.62 7.80 -2.39 -0.02 1.60 16 35 H 0.44 10.52 8.31 -92.71 -0.77 9.75 16 36 H 0.14 4.42 4.03 -69.31 -0.28 4.14 16 37 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 43 H 0.09 4.94 5.13 -2.38 -0.01 4.93 16 44 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.09 1.19 7.92 -2.39 -0.02 1.17 16 47 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -68.73 380.64 3.09 -65.64 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -0.04 Total: 24.86 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 7.05 Total: 19.44 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -5.85 Total: -115.13 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -0.09 Total: -39.89 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -68.73 3.09 -65.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.077 kcal (2) G-P(sol) polarization free energy of solvation -68.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds