Wall clock time and date at job start Tue Mar 31 2020 19:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30121 * 126.70370 * 2 1 4 4 O 1.20888 * 111.98100 * 179.67989 * 3 2 1 5 5 C 1.34647 * 111.46579 * 0.49550 * 4 3 2 6 6 C 1.47511 * 126.94377 * 179.78944 * 5 4 3 7 7 O 1.21581 * 119.99767 * 186.49325 * 6 5 4 8 8 N 1.34775 * 120.00038 * 6.49145 * 6 5 4 9 9 C 1.47080 * 120.87965 * 175.85022 * 8 6 5 10 10 C 1.53241 * 108.52414 * 231.16580 * 9 8 6 11 11 N 1.46900 * 109.33734 * 306.17445 * 10 9 8 12 12 C 1.46901 * 111.00066 * 187.25476 * 11 10 9 13 13 C 1.53943 * 113.74053 * 273.74227 * 12 11 10 14 14 N 1.47807 * 86.03530 * 222.08209 * 13 12 11 15 15 C 1.36942 * 134.45457 * 204.64136 * 14 13 12 16 16 H 1.08007 * 119.99701 * 184.71426 * 15 14 13 17 17 C 1.38810 * 119.99991 * 4.71795 * 15 14 13 18 18 N 1.31612 * 120.00101 * 354.78621 * 17 15 14 19 19 Si 1.86801 * 119.99801 * 174.79369 * 17 15 14 20 20 H 1.48498 * 109.47333 * 94.99770 * 19 17 15 21 21 H 1.48500 * 109.46993 * 214.99421 * 19 17 15 22 22 H 1.48495 * 109.47103 * 334.99430 * 19 17 15 23 23 C 1.47579 * 91.05356 * 24.54911 * 14 13 12 24 24 C 1.46899 * 111.27177 * 63.10177 * 11 10 9 25 25 C 1.47075 * 120.88348 * 355.83487 * 8 6 5 26 26 C 1.36828 * 106.11168 * 359.52869 * 5 4 3 27 27 C 1.50696 * 128.07454 * 180.24012 * 26 5 4 28 28 H 1.08996 * 109.46886 * 270.01990 * 1 2 3 29 29 H 1.09002 * 109.47018 * 30.01903 * 1 2 3 30 30 H 1.09000 * 109.47475 * 150.02003 * 1 2 3 31 31 H 1.09007 * 109.62613 * 111.45832 * 9 8 6 32 32 H 1.08996 * 109.63445 * 350.87677 * 9 8 6 33 33 H 1.08997 * 109.49204 * 186.21272 * 10 9 8 34 34 H 1.08995 * 109.49188 * 66.12982 * 10 9 8 35 35 H 1.09004 * 112.94421 * 45.33125 * 12 11 10 36 36 H 1.09008 * 113.76543 * 336.34631 * 13 12 11 37 37 H 1.09001 * 113.77409 * 107.74248 * 13 12 11 38 38 H 0.97000 * 120.00136 * 180.02562 * 18 17 15 39 39 H 1.09000 * 113.76868 * 221.15417 * 23 14 13 40 40 H 1.09000 * 113.87241 * 89.76759 * 23 14 13 41 41 H 1.08999 * 109.48851 * 56.85874 * 24 11 10 42 42 H 1.09000 * 109.48964 * 176.93518 * 24 11 10 43 43 H 1.09004 * 109.62705 * 248.54548 * 25 8 6 44 44 H 1.08998 * 109.62693 * 9.12129 * 25 8 6 45 45 H 1.09005 * 109.47038 * 90.00205 * 27 26 5 46 46 H 1.09000 * 109.46985 * 209.99749 * 27 26 5 47 47 H 1.08994 * 109.47247 * 329.99682 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2848 1.0432 0.0000 4 8 3.4539 0.7360 0.0063 5 6 3.6121 -0.6011 0.0006 6 6 4.8870 -1.3431 0.0011 7 8 4.8865 -2.5525 -0.1236 8 7 6.0523 -0.6804 0.1396 9 6 7.3275 -1.4072 0.2336 10 6 8.0867 -0.9012 1.4648 11 7 8.2089 0.5610 1.3939 12 6 9.0770 1.0693 2.4644 13 6 8.3382 1.3322 3.7891 14 7 9.1376 2.5728 3.8700 15 6 9.5534 3.3807 4.8946 16 1 10.0818 4.2976 4.6789 17 6 9.2959 3.0210 6.2104 18 7 8.5642 1.9586 6.4710 19 14 9.9878 4.0452 7.6110 20 1 8.9692 5.0309 8.0536 21 1 10.3421 3.1560 8.7463 22 1 11.2021 4.7628 7.1466 23 6 9.3095 2.5899 2.4044 24 6 6.8908 1.2084 1.4328 25 6 6.0827 0.7888 0.2004 26 6 2.3512 -1.1326 0.0003 27 6 1.9557 -2.5867 0.0000 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5135 31 1 7.9202 -1.2243 -0.6628 32 1 7.1338 -2.4749 0.3363 33 1 9.0804 -1.3485 1.4886 34 1 7.5414 -1.1772 2.3672 35 1 9.9928 0.4896 2.5802 36 1 7.2688 1.5056 3.6688 37 1 8.5676 0.6085 4.5713 38 1 8.3840 1.7075 7.3904 39 1 10.3131 2.8686 2.0830 40 1 8.5271 3.1335 1.8748 41 1 6.3622 0.9030 2.3358 42 1 7.0173 2.2911 1.4336 43 1 6.5557 1.1828 -0.6992 44 1 5.0659 1.1730 0.2811 45 1 1.8601 -2.9375 1.0276 46 1 1.0016 -2.7036 -0.5140 47 1 2.7191 -3.1708 -0.5139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941450142.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:23 Heat of formation + Delta-G solvation = 115.421619 kcal Electronic energy + Delta-G solvation = -29593.476885 eV Core-core repulsion = 25589.746870 eV Total energy + Delta-G solvation = -4003.730015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.24548 -40.34522 -38.94242 -36.85772 -35.65369 -33.91848 -32.95860 -31.88524 -31.11634 -29.23565 -28.73340 -27.93411 -26.37362 -24.87073 -24.06267 -23.61932 -22.39669 -22.04071 -20.97503 -19.72819 -18.61997 -18.06193 -17.46357 -16.93433 -16.54649 -16.27821 -15.45538 -15.25059 -14.98065 -14.76853 -14.35361 -14.29459 -13.98697 -13.84026 -13.76226 -13.47361 -13.32021 -13.10450 -13.01682 -12.62967 -12.41143 -12.28844 -11.98378 -11.77803 -11.61982 -11.35344 -11.21727 -11.00026 -10.86410 -10.71442 -10.57892 -10.36785 -10.18391 -10.14241 -9.91650 -9.69910 -9.55065 -8.89877 -8.73764 -7.86695 -6.87322 -5.78698 -3.11062 0.58538 1.79128 2.32714 2.75719 2.91381 3.37561 3.42822 3.45060 3.76034 4.04677 4.09882 4.39139 4.47589 4.59625 4.79195 4.93941 5.02800 5.11743 5.13600 5.22198 5.25227 5.29998 5.34709 5.37220 5.37448 5.47413 5.52332 5.54550 5.63609 5.66142 5.76243 5.86475 5.94678 5.96139 6.06668 6.12824 6.28261 6.32899 6.53854 6.61771 6.92542 7.09273 7.20281 7.34279 7.51229 7.59198 7.67131 7.94679 7.96396 9.02183 9.69226 10.57878 11.37947 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.002829 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.349042 B = 9896.810329 C =10793.697734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 N -0.345 5.345 4 O 0.116 5.884 5 C -0.088 4.088 6 C 0.605 3.395 7 O -0.519 6.519 8 N -0.595 5.595 9 C 0.120 3.880 10 C 0.041 3.959 11 N -0.529 5.529 12 C 0.036 3.964 13 C 0.129 3.871 14 N -0.609 5.609 15 C -0.222 4.222 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 0.911 3.089 20 H -0.290 1.290 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.126 3.874 24 C 0.038 3.962 25 C 0.099 3.901 26 C -0.118 4.118 27 C -0.086 4.086 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.100 0.900 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.253 0.747 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.049 0.951 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.291 -8.665 -16.460 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.147 4.147 3 N -0.049 5.049 4 O 0.047 5.953 5 C -0.154 4.154 6 C 0.391 3.609 7 O -0.396 6.396 8 N -0.327 5.327 9 C -0.002 4.002 10 C -0.088 4.088 11 N -0.254 5.254 12 C -0.073 4.073 13 C 0.003 3.997 14 N -0.336 5.336 15 C -0.349 4.349 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.568 5.568 19 Si 0.741 3.259 20 H -0.217 1.217 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.000 4.000 24 C -0.091 4.091 25 C -0.024 4.024 26 C -0.123 4.123 27 C -0.143 4.143 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.118 0.882 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.119 0.881 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.221 -7.797 -16.641 22.070 hybrid contribution -0.165 -0.077 1.747 1.757 sum -12.386 -7.874 -14.894 20.910 Atomic orbital electron populations 1.20200 0.85358 1.03956 1.03728 1.23493 0.99200 0.88047 1.03980 1.73723 0.89875 1.24552 1.16781 1.85066 1.20694 1.21926 1.67613 1.23951 0.96896 0.83902 1.10602 1.16609 0.80865 0.85907 0.77521 1.90809 1.85571 1.12239 1.50970 1.48110 1.06130 1.08221 1.70256 1.21877 0.82247 0.97020 0.99073 1.22427 1.00607 0.89309 0.96461 1.62045 1.11836 1.03954 1.47523 1.24279 0.96506 0.96624 0.89881 1.22996 0.93555 0.89786 0.93408 1.45837 1.59390 1.28369 0.99964 1.19015 1.30067 1.01519 0.84342 0.90211 1.24794 1.00303 0.98238 0.97053 1.69827 1.41570 1.27029 1.18371 0.86114 0.78640 0.79011 0.82088 1.21695 1.21613 1.20502 1.22653 0.98430 0.92368 0.86540 1.22573 0.89607 1.00861 0.96058 1.22455 1.01977 0.78033 0.99958 1.21465 0.90259 0.98573 1.02005 1.20342 1.02581 0.87918 1.03449 0.89840 0.90238 0.89840 0.90152 0.88622 0.89264 0.94004 0.88172 0.95321 0.91120 0.93718 0.93586 0.94544 0.93311 0.88592 0.89769 0.88066 0.90177 0.90830 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.39 36.01 0.37 -0.14 16 2 C 0.01 0.12 7.31 -82.17 -0.60 -0.48 16 3 N -0.35 -4.45 12.04 33.52 0.40 -4.05 16 4 O 0.12 1.49 7.78 15.54 0.12 1.61 16 5 C -0.09 -1.12 6.99 -36.31 -0.25 -1.37 16 6 C 0.61 8.07 7.70 -12.48 -0.10 7.98 16 7 O -0.52 -7.67 14.56 5.29 0.08 -7.59 16 8 N -0.59 -7.42 3.01 -173.70 -0.52 -7.95 16 9 C 0.12 1.37 6.58 -3.60 -0.02 1.35 16 10 C 0.04 0.53 5.61 -3.70 -0.02 0.51 16 11 N -0.53 -7.82 4.76 -228.25 -1.09 -8.90 16 12 C 0.04 0.65 4.03 -69.93 -0.28 0.37 16 13 C 0.13 2.98 6.88 -2.84 -0.02 2.96 16 14 N -0.61 -15.47 3.70 -177.90 -0.66 -16.13 16 15 C -0.22 -6.22 10.70 -15.06 -0.16 -6.38 16 16 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 18 N -0.92 -27.39 11.36 55.49 0.63 -26.76 16 19 Si 0.91 22.18 29.56 -169.99 -5.02 17.16 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.13 2.53 8.42 -2.97 -0.03 2.51 16 24 C 0.04 0.55 4.47 -3.70 -0.02 0.53 16 25 C 0.10 1.18 6.48 -3.61 -0.02 1.16 16 26 C -0.12 -1.32 6.36 -103.99 -0.66 -1.98 16 27 C -0.09 -0.75 9.93 36.00 0.36 -0.39 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.40 7.65 -51.93 -0.40 0.00 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 1.08 7.09 -51.93 -0.37 0.71 16 33 H 0.09 1.04 8.04 -51.93 -0.42 0.62 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.10 1.81 8.04 -51.93 -0.42 1.39 16 36 H 0.03 0.68 5.65 -51.92 -0.29 0.39 16 37 H 0.07 1.85 7.07 -51.93 -0.37 1.48 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.70 6.22 -51.93 -0.32 0.38 16 41 H 0.05 0.81 6.45 -51.93 -0.33 0.48 16 42 H 0.10 1.45 6.06 -51.93 -0.31 1.14 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.10 1.21 3.93 -54.22 -0.21 1.00 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.45 7.65 -51.93 -0.40 0.05 16 47 H 0.09 0.91 6.63 -51.93 -0.34 0.57 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -32.67 369.05 -8.74 -41.41 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.69 Total: -0.66 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -1.55 Total: 6.30 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -1.23 Total: -63.79 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: 0.20 Total: -5.98 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.67 -8.74 -41.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941450142.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.828 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds