Wall clock time and date at job start Tue Mar 31 2020 19:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31882 * 119.93410 * 2 1 4 4 N 1.28270 * 122.62602 * 180.02562 * 3 2 1 5 5 C 1.32485 * 122.21777 * 0.02562 * 4 3 2 6 6 O 1.35450 * 120.25023 * 179.97438 * 5 4 3 7 7 C 1.40452 * 119.49481 * 359.97438 * 5 4 3 8 8 C 1.47830 * 121.17947 * 180.02562 * 7 5 4 9 9 O 1.21549 * 119.99651 * 90.00569 * 8 7 5 10 10 N 1.34767 * 120.00105 * 270.00651 * 8 7 5 11 11 C 1.46500 * 119.99948 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46147 * 34.99806 * 11 10 8 13 13 C 1.53042 * 109.44615 * 275.03150 * 11 10 8 14 14 C 1.53188 * 109.31626 * 301.34985 * 13 11 10 15 15 N 1.46932 * 108.77714 * 305.36772 * 14 13 11 16 16 C 1.36932 * 120.63056 * 233.58837 * 15 14 13 17 17 H 1.08002 * 120.00055 * 150.18762 * 16 15 14 18 18 C 1.38817 * 120.00123 * 330.17623 * 16 15 14 19 19 N 1.31622 * 119.99629 * 344.49397 * 18 16 15 20 20 Si 1.86798 * 119.99964 * 164.48984 * 18 16 15 21 21 H 1.48491 * 109.47318 * 90.00235 * 20 18 16 22 22 H 1.48503 * 109.46686 * 210.00302 * 20 18 16 23 23 H 1.48498 * 109.47119 * 329.99797 * 20 18 16 24 24 C 1.46924 * 118.73587 * 53.60231 * 15 14 13 25 25 H 1.09001 * 109.58388 * 66.18577 * 24 15 14 26 26 C 1.53004 * 109.58528 * 186.60763 * 24 15 14 27 27 C 1.53046 * 109.46426 * 154.97345 * 11 10 8 28 28 C 1.38483 * 119.92875 * 180.29041 * 2 1 3 29 29 C 1.50693 * 121.06238 * 0.02562 * 28 2 1 30 30 H 1.08994 * 109.47368 * 89.99238 * 1 2 3 31 31 H 1.09000 * 109.47113 * 209.99659 * 1 2 3 32 32 H 1.09000 * 109.47160 * 329.99614 * 1 2 3 33 33 H 0.96699 * 113.99728 * 270.01393 * 6 5 4 34 34 H 0.97003 * 120.00248 * 359.97438 * 10 8 7 35 35 H 1.08992 * 109.49937 * 61.30356 * 13 11 10 36 36 H 1.09009 * 109.49594 * 181.40211 * 13 11 10 37 37 H 1.08997 * 109.58928 * 185.57969 * 14 13 11 38 38 H 1.09005 * 109.70558 * 65.21998 * 14 13 11 39 39 H 0.97001 * 119.99515 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.47170 * 179.29560 * 26 24 15 41 41 H 1.09005 * 109.47065 * 299.28977 * 26 24 15 42 42 H 1.08990 * 109.47243 * 59.29037 * 26 24 15 43 43 H 1.08992 * 109.49979 * 178.59188 * 27 11 10 44 44 H 1.08998 * 109.49221 * 298.68966 * 27 11 10 45 45 H 1.09004 * 109.47155 * 270.24544 * 29 28 2 46 46 H 1.08999 * 109.47248 * 30.24013 * 29 28 2 47 47 H 1.09000 * 109.47171 * 150.24661 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1651 1.1429 0.0000 4 7 3.4464 1.2031 -0.0005 5 6 4.2046 0.1167 -0.0015 6 8 5.5546 0.2267 -0.0025 7 6 3.5978 -1.1500 -0.0016 8 6 4.4078 -2.3866 -0.0021 9 8 4.7411 -2.8953 1.0503 10 7 4.7767 -2.9500 -1.1695 11 6 5.5790 -4.1758 -1.1700 12 1 5.2847 -4.8028 -0.3284 13 6 7.0609 -3.8150 -1.0435 14 6 7.4624 -2.9058 -2.2091 15 7 7.1088 -3.5704 -3.4709 16 6 8.0470 -3.7488 -4.4522 17 1 7.9755 -4.5943 -5.1203 18 6 9.0898 -2.8427 -4.5885 19 7 9.0224 -1.6683 -3.9982 20 14 10.5886 -3.2904 -5.6095 21 1 10.3711 -2.8725 -7.0177 22 1 11.7832 -2.5957 -5.0659 23 1 10.8031 -4.7588 -5.5564 24 6 5.7294 -4.0397 -3.6597 25 1 5.0551 -3.1844 -3.7025 26 6 5.6329 -4.8382 -4.9613 27 6 5.3474 -4.9363 -2.4778 28 6 2.1980 -1.2001 -0.0061 29 6 1.4672 -2.5180 -0.0133 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 5.9459 0.2592 -0.8862 34 1 4.5105 -2.5443 -2.0094 35 1 7.2292 -3.2940 -0.1010 36 1 7.6604 -4.7251 -1.0688 37 1 8.5370 -2.7264 -2.1793 38 1 6.9313 -1.9567 -2.1348 39 1 9.7510 -1.0350 -4.0937 40 1 4.6118 -5.1959 -5.0933 41 1 5.9050 -4.1985 -5.8010 42 1 6.3131 -5.6886 -4.9171 43 1 5.9629 -5.8357 -2.4896 44 1 4.2961 -5.2133 -2.5562 45 1 1.2867 -2.8391 1.0126 46 1 0.5148 -2.4025 -0.5307 47 1 2.0714 -3.2657 -0.5271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947603329.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:49 Heat of formation + Delta-G solvation = -26.204909 kcal Electronic energy + Delta-G solvation = -30380.663492 eV Core-core repulsion = 26370.792090 eV Total energy + Delta-G solvation = -4009.871402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.66593 -41.06376 -39.27489 -38.89863 -36.04497 -35.97617 -34.17303 -33.81665 -32.72766 -31.36736 -29.68472 -28.99007 -27.99381 -26.86438 -25.68684 -23.85054 -23.73612 -22.45243 -22.07776 -20.30973 -20.10206 -19.41466 -18.69521 -18.26920 -17.37423 -17.09149 -16.69017 -16.10552 -15.93479 -15.75956 -15.57969 -15.48277 -15.04252 -14.76560 -14.50502 -14.32156 -14.17084 -14.09121 -13.90777 -13.58688 -13.36491 -13.30365 -13.23019 -12.89160 -12.84230 -12.67079 -12.48047 -12.35939 -12.28522 -12.18510 -12.00225 -11.71299 -11.59952 -11.43284 -11.08274 -10.97530 -10.57033 -10.53658 -10.49880 -10.18152 -8.57869 -7.82936 -5.27273 -0.70244 -0.43915 1.22044 1.45715 1.49522 1.56233 1.88291 2.04160 2.26966 2.53093 2.96546 3.25745 3.30638 3.33883 3.58662 3.63523 3.79088 3.91368 4.04977 4.11114 4.19141 4.33641 4.42962 4.57723 4.59414 4.64955 4.66188 4.76322 4.78210 4.79031 4.92000 4.94372 4.97985 5.02103 5.03183 5.10751 5.16224 5.32856 5.41496 5.45330 5.54925 5.58347 5.74545 5.76804 6.18618 6.31053 6.45420 6.94091 7.20654 7.43568 7.93049 8.43415 9.23024 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.003583 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.731917 B = 7812.101804 C = 8416.859923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.062 3.938 3 N -0.231 5.231 4 N -0.286 5.286 5 C 0.277 3.723 6 O -0.482 6.482 7 C -0.163 4.163 8 C 0.582 3.418 9 O -0.559 6.559 10 N -0.691 5.691 11 C 0.160 3.840 12 H 0.086 0.914 13 C -0.144 4.144 14 C 0.189 3.811 15 N -0.601 5.601 16 C -0.247 4.247 17 H 0.074 0.926 18 C -0.049 4.049 19 N -0.933 5.933 20 Si 0.953 3.047 21 H -0.287 1.287 22 H -0.301 1.301 23 H -0.271 1.271 24 C 0.160 3.840 25 H 0.023 0.977 26 C -0.131 4.131 27 C -0.124 4.124 28 C -0.019 4.019 29 C -0.124 4.124 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.422 0.578 34 H 0.407 0.593 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.002 0.998 39 H 0.245 0.755 40 H 0.078 0.922 41 H 0.038 0.962 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.126 0.874 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.362 -4.405 4.640 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.084 4.084 3 N -0.075 5.075 4 N -0.137 5.137 5 C 0.091 3.909 6 O -0.291 6.291 7 C -0.178 4.178 8 C 0.366 3.634 9 O -0.438 6.438 10 N -0.341 5.341 11 C 0.056 3.944 12 H 0.104 0.896 13 C -0.184 4.184 14 C 0.063 3.937 15 N -0.325 5.325 16 C -0.378 4.378 17 H 0.092 0.908 18 C -0.244 4.244 19 N -0.579 5.579 20 Si 0.783 3.217 21 H -0.214 1.214 22 H -0.228 1.228 23 H -0.196 1.196 24 C 0.054 3.946 25 H 0.040 0.960 26 C -0.188 4.188 27 C -0.163 4.163 28 C -0.030 4.030 29 C -0.180 4.180 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.107 0.893 33 H 0.284 0.716 34 H 0.244 0.756 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.020 0.980 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.114 0.886 45 H 0.121 0.879 46 H 0.144 0.856 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.974 -3.062 5.929 21.060 hybrid contribution 2.129 -0.648 -1.219 2.537 sum -17.846 -3.711 4.710 18.826 Atomic orbital electron populations 1.20957 0.83078 1.05980 1.05695 1.23494 1.01441 0.88202 0.95278 1.72748 0.99681 1.26213 1.08903 1.72985 1.00458 1.27051 1.13220 1.21007 0.86335 0.88763 0.94841 1.84697 1.13328 1.95229 1.35819 1.21398 0.96010 0.94367 1.06004 1.17703 0.78778 0.82630 0.84269 1.90792 1.56798 1.63742 1.32439 1.46058 1.52675 1.27673 1.07710 1.20904 0.89410 0.84648 0.99428 0.89648 1.22396 0.96636 1.00933 0.98474 1.20366 0.98549 0.91340 0.83404 1.44339 1.05800 1.68677 1.13657 1.19448 1.03659 1.04573 1.10075 0.90802 1.25704 1.02853 0.94927 1.00955 1.70136 1.32378 1.06455 1.48967 0.85489 0.80000 0.77788 0.78449 1.21408 1.22786 1.19618 1.20665 0.85466 0.94184 0.94290 0.95978 1.21737 1.01330 0.99330 0.96420 1.22256 1.02757 0.98581 0.92744 1.21557 0.90383 0.99738 0.91365 1.21169 1.01882 0.89648 1.05304 0.87364 0.86987 0.89332 0.71626 0.75622 0.93778 0.91690 0.93813 0.97956 0.94607 0.90332 0.94284 0.93219 0.90349 0.88569 0.87923 0.85607 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 9.42 71.24 0.67 -0.21 16 2 C 0.06 1.23 6.86 42.61 0.29 1.52 16 3 N -0.23 -6.41 11.40 -47.72 -0.54 -6.95 16 4 N -0.29 -9.36 11.52 -169.57 -1.95 -11.31 16 5 C 0.28 8.88 7.88 85.13 0.67 9.55 16 6 O -0.48 -16.10 13.09 -87.47 -1.14 -17.25 16 7 C -0.16 -4.55 5.69 -19.75 -0.11 -4.66 16 8 C 0.58 17.79 5.58 86.78 0.48 18.27 16 9 O -0.56 -21.06 16.77 -3.87 -0.06 -21.13 16 10 N -0.69 -19.21 4.26 -445.30 -1.90 -21.11 16 11 C 0.16 4.73 2.78 45.02 0.13 4.86 16 12 H 0.09 2.46 7.58 -2.39 -0.02 2.45 16 13 C -0.14 -5.36 5.77 30.67 0.18 -5.19 16 14 C 0.19 8.49 5.02 86.36 0.43 8.93 16 15 N -0.60 -26.59 2.99 -675.22 -2.02 -28.61 16 16 C -0.25 -12.41 8.58 84.04 0.72 -11.69 16 17 H 0.07 3.58 6.23 -2.91 -0.02 3.56 16 18 C -0.05 -2.61 4.94 84.86 0.42 -2.20 16 19 N -0.93 -53.00 11.23 21.65 0.24 -52.76 16 20 Si 0.95 43.67 29.58 68.60 2.03 45.70 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 24 C 0.16 5.34 3.20 44.98 0.14 5.48 16 25 H 0.02 0.75 6.64 -2.39 -0.02 0.73 16 26 C -0.13 -4.00 7.95 71.98 0.57 -3.43 16 27 C -0.12 -3.28 5.07 30.67 0.16 -3.12 16 28 C -0.02 -0.38 5.96 -19.36 -0.12 -0.49 16 29 C -0.12 -1.45 8.92 71.23 0.64 -0.81 16 30 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.11 0.38 6.80 -2.39 -0.02 0.36 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.42 11.70 9.06 -74.06 -0.67 11.03 16 34 H 0.41 10.67 6.85 -92.71 -0.64 10.03 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 37 H 0.04 2.33 6.15 -2.39 -0.01 2.32 16 38 H 0.00 0.11 7.74 -2.38 -0.02 0.09 16 39 H 0.24 13.80 8.31 -92.71 -0.77 13.03 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.04 1.36 7.67 -2.38 -0.02 1.35 16 42 H 0.05 1.57 7.40 -2.39 -0.02 1.56 16 43 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.10 1.87 8.14 -2.39 -0.02 1.86 16 45 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.13 0.54 6.83 -2.39 -0.02 0.52 16 47 H 0.07 1.02 7.24 -2.39 -0.02 1.00 16 Total: -1.00 -72.94 375.41 -0.36 -73.30 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -0.28 Total: 23.30 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 5.27 Total: 16.82 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -6.17 Total: -120.74 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -1.21 Total: -38.37 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -72.94 -0.36 -73.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947603329.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.092 kcal (2) G-P(sol) polarization free energy of solvation -72.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds