Wall clock time and date at job start Tue Mar 31 2020 19:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30520 * 119.70124 * 2 1 4 4 N 1.28267 * 122.98363 * 179.97438 * 3 2 1 5 5 C 1.46498 * 119.03353 * 180.02562 * 4 3 2 6 6 C 1.34686 * 121.93763 * 0.02562 * 4 3 2 7 7 O 1.21901 * 120.46530 * 179.70485 * 6 4 3 8 8 C 1.42319 * 119.06514 * 359.97438 * 6 4 3 9 9 C 1.47410 * 121.29879 * 179.97438 * 8 6 4 10 10 O 1.21610 * 119.99641 * 174.23338 * 9 8 6 11 11 N 1.34773 * 120.00275 * 354.23467 * 9 8 6 12 12 C 1.46500 * 119.99945 * 185.09514 * 11 9 8 13 13 H 1.08999 * 109.47586 * 34.99459 * 12 11 9 14 14 C 1.52998 * 109.46504 * 274.99096 * 12 11 9 15 15 C 1.53007 * 109.47016 * 154.99925 * 12 11 9 16 16 C 1.53944 * 113.73769 * 278.73564 * 15 12 11 17 17 N 1.47812 * 86.03506 * 222.08634 * 16 15 12 18 18 C 1.36937 * 134.45545 * 204.64553 * 17 16 15 19 19 H 1.08004 * 119.99888 * 179.86225 * 18 17 16 20 20 C 1.38815 * 120.00227 * 359.86565 * 18 17 16 21 21 N 1.31620 * 119.99619 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00109 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47173 * 59.99951 * 22 20 18 24 24 H 1.48498 * 109.47132 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47335 * 299.99832 * 22 20 18 26 26 C 1.47581 * 91.05016 * 24.54697 * 17 16 15 27 27 C 1.39316 * 117.40024 * 359.97438 * 8 6 4 28 28 C 1.50703 * 120.99136 * 179.97438 * 27 8 6 29 29 H 1.08995 * 109.47144 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.47009 * 120.00589 * 1 2 3 31 31 H 1.09001 * 109.47345 * 239.99899 * 1 2 3 32 32 H 1.09002 * 109.47163 * 270.02045 * 5 4 3 33 33 H 1.08995 * 109.47393 * 30.01471 * 5 4 3 34 34 H 1.08996 * 109.47482 * 150.02339 * 5 4 3 35 35 H 0.97000 * 119.99917 * 5.08652 * 11 9 8 36 36 H 1.08997 * 109.47768 * 299.99967 * 14 12 11 37 37 H 1.09003 * 109.47343 * 60.00724 * 14 12 11 38 38 H 1.09000 * 109.47066 * 179.97438 * 14 12 11 39 39 H 1.08999 * 112.94721 * 50.32794 * 15 12 11 40 40 H 1.08998 * 113.76995 * 336.35183 * 16 15 12 41 41 H 1.08998 * 113.76801 * 107.74697 * 16 15 12 42 42 H 0.96997 * 119.99685 * 179.97438 * 21 20 18 43 43 H 1.08997 * 113.76848 * 221.14809 * 26 17 16 44 44 H 1.09006 * 113.86373 * 89.77178 * 26 17 16 45 45 H 1.09005 * 109.46988 * 180.02562 * 28 27 8 46 46 H 1.09004 * 109.47157 * 300.02470 * 28 27 8 47 47 H 1.08998 * 109.46992 * 60.02519 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1537 1.1337 0.0000 4 7 3.4343 1.2072 0.0005 5 6 4.0708 2.5267 0.0010 6 6 4.2110 0.1069 0.0005 7 8 5.4258 0.2079 -0.0044 8 6 3.5935 -1.1754 0.0006 9 6 4.3961 -2.4119 0.0000 10 8 3.8482 -3.4924 0.1059 11 7 5.7370 -2.3449 -0.1177 12 6 6.5247 -3.5749 -0.2306 13 1 5.9618 -4.3162 -0.7978 14 6 6.8217 -4.1203 1.1677 15 6 7.8407 -3.2735 -0.9506 16 6 7.7107 -3.2218 -2.4836 17 7 8.9830 -3.9736 -2.5143 18 6 9.9935 -4.1118 -3.4280 19 1 10.8437 -4.7384 -3.2022 20 6 9.9251 -3.4466 -4.6445 21 7 8.8892 -2.6826 -4.9194 22 14 11.3039 -3.6347 -5.8906 23 1 11.4363 -5.0641 -6.2704 24 1 10.9933 -2.8279 -7.0980 25 1 12.5785 -3.1609 -5.2939 26 6 8.7282 -4.5130 -1.1644 27 6 2.2010 -1.2164 0.0011 28 6 1.4633 -2.5305 0.0006 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5140 -0.8900 31 1 -0.3634 -0.5138 0.8900 32 1 4.2287 2.8543 -1.0265 33 1 3.4270 3.2404 0.5150 34 1 5.0302 2.4671 0.5148 35 1 6.1805 -1.4823 -0.1279 36 1 7.3847 -3.3790 1.7348 37 1 5.8842 -4.3350 1.6807 38 1 7.4074 -5.0357 1.0838 39 1 8.3718 -2.4215 -0.5262 40 1 6.8599 -3.7820 -2.8715 41 1 7.7834 -2.2159 -2.8970 42 1 8.8416 -2.2175 -5.7692 43 1 9.6117 -4.5362 -0.5266 44 1 8.1772 -5.4536 -1.1621 45 1 0.3893 -2.3443 0.0007 46 1 1.7335 -3.0985 -0.8896 47 1 1.7336 -3.0992 0.8904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970250054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:04 Heat of formation + Delta-G solvation = 50.239706 kcal Electronic energy + Delta-G solvation = -29480.364892 eV Core-core repulsion = 25473.808377 eV Total energy + Delta-G solvation = -4006.556515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.40472 -39.64855 -38.35218 -38.01715 -36.03764 -34.64603 -32.55542 -32.13576 -31.07845 -30.07065 -28.29242 -27.43039 -26.64560 -25.18809 -24.45918 -23.71525 -22.51371 -21.40104 -20.45041 -19.28657 -18.65965 -17.55632 -17.09918 -16.79193 -16.52057 -16.00055 -15.57870 -14.83755 -14.74428 -14.34788 -14.31158 -14.11711 -13.80043 -13.57942 -13.49851 -13.45723 -13.14814 -12.96585 -12.82913 -12.80364 -12.33024 -12.31957 -12.21601 -11.97690 -11.57092 -11.52026 -11.20353 -11.19768 -10.83404 -10.66034 -10.31364 -10.17723 -10.08956 -9.86547 -9.64498 -9.56535 -9.30436 -8.77329 -8.72134 -8.54554 -6.79334 -5.68844 -3.01030 -0.07523 1.26810 1.88605 2.62339 3.33002 3.44016 3.47396 3.48946 3.49106 3.63936 4.16797 4.37955 4.45589 4.51645 4.85722 4.92320 4.93879 5.08700 5.15369 5.19725 5.26749 5.33089 5.36030 5.39050 5.44119 5.51721 5.54558 5.60816 5.63699 5.76867 5.79775 5.94318 6.06790 6.09685 6.16685 6.34687 6.46849 6.51324 6.69064 6.78894 6.95669 7.27740 7.32952 7.46842 7.65463 7.77090 7.95338 8.05895 8.50395 9.11871 9.78353 10.69022 11.48103 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014647 B = 0.002962 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.248801 B = 9450.563742 C =10221.248483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.053 3.947 3 N -0.207 5.207 4 N -0.342 5.342 5 C 0.079 3.921 6 C 0.494 3.506 7 O -0.519 6.519 8 C -0.226 4.226 9 C 0.573 3.427 10 O -0.543 6.543 11 N -0.700 5.700 12 C 0.150 3.850 13 H 0.085 0.915 14 C -0.157 4.157 15 C -0.146 4.146 16 C 0.172 3.828 17 N -0.613 5.613 18 C -0.222 4.222 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.131 3.869 27 C 0.039 3.961 28 C -0.118 4.118 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.414 0.586 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.025 0.975 41 H 0.071 0.929 42 H 0.253 0.747 43 H 0.044 0.956 44 H 0.035 0.965 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.546 8.668 14.233 25.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 N -0.033 5.033 4 N -0.162 5.162 5 C -0.060 4.060 6 C 0.293 3.707 7 O -0.397 6.397 8 C -0.240 4.240 9 C 0.359 3.641 10 O -0.423 6.423 11 N -0.357 5.357 12 C 0.045 3.955 13 H 0.104 0.896 14 C -0.215 4.215 15 C -0.166 4.166 16 C 0.046 3.954 17 N -0.339 5.339 18 C -0.350 4.350 19 H 0.097 0.903 20 C -0.206 4.206 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.004 3.996 27 C 0.031 3.969 28 C -0.174 4.174 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.258 0.742 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.043 0.957 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.091 0.909 46 H 0.115 0.885 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.021 9.030 13.958 25.262 hybrid contribution 1.242 -0.363 -0.886 1.568 sum -17.779 8.667 13.073 23.709 Atomic orbital electron populations 1.20585 0.85799 1.04468 1.03653 1.21748 0.98137 0.86667 1.05108 1.70647 0.95154 1.28954 1.08567 1.46530 1.01947 1.10076 1.57624 1.22223 0.99321 0.79667 1.04838 1.17902 0.88150 0.84912 0.79730 1.90741 1.12100 1.85119 1.51750 1.21590 0.94326 0.94085 1.14030 1.17261 0.82643 0.86775 0.77395 1.90749 1.71755 1.28587 1.51204 1.46542 1.05808 1.12048 1.71341 1.21110 0.92036 0.86144 0.96208 0.89649 1.22119 1.01420 1.01171 0.96830 1.23798 0.93865 1.00073 0.98836 1.22274 0.87538 0.97669 0.87887 1.45980 1.19445 1.53719 1.14738 1.18984 0.96899 1.24305 0.94794 0.90343 1.24787 0.98059 1.00002 0.97731 1.69826 1.29567 1.33752 1.23693 0.86204 0.81324 0.77406 0.80849 1.21233 1.21610 1.21132 1.22487 0.95350 0.93750 0.87982 1.21648 0.92502 0.97497 0.85214 1.21078 0.98620 0.92030 1.05671 0.89950 0.89601 0.89670 0.89744 0.88658 0.87910 0.74170 0.92818 0.92708 0.91469 0.89407 0.95737 0.91094 0.93710 0.93800 0.94761 0.90860 0.88538 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 8.74 36.01 0.31 -0.09 16 2 C 0.05 0.47 6.87 -82.47 -0.57 -0.09 16 3 N -0.21 -2.08 10.74 33.66 0.36 -1.72 16 4 N -0.34 -3.88 3.62 -69.83 -0.25 -4.13 16 5 C 0.08 0.63 10.58 59.85 0.63 1.27 16 6 C 0.49 7.07 7.50 -14.73 -0.11 6.95 16 7 O -0.52 -8.54 13.42 5.01 0.07 -8.47 16 8 C -0.23 -3.20 5.95 -104.19 -0.62 -3.83 16 9 C 0.57 9.54 7.70 -12.53 -0.10 9.44 16 10 O -0.54 -9.50 13.48 5.27 0.07 -9.43 16 11 N -0.70 -12.11 5.00 -54.88 -0.27 -12.38 16 12 C 0.15 2.64 2.34 -67.93 -0.16 2.48 16 13 H 0.09 1.63 7.49 -51.93 -0.39 1.24 16 14 C -0.16 -2.36 9.31 37.16 0.35 -2.02 16 15 C -0.15 -2.93 3.47 -89.70 -0.31 -3.24 16 16 C 0.17 4.33 7.08 -2.84 -0.02 4.31 16 17 N -0.61 -16.59 3.70 -177.72 -0.66 -17.25 16 18 C -0.22 -6.51 10.70 -15.06 -0.16 -6.67 16 19 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 21 N -0.92 -28.46 11.39 55.49 0.63 -27.83 16 22 Si 0.91 22.89 29.55 -169.99 -5.02 17.86 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.13 2.81 7.64 -2.97 -0.02 2.78 16 27 C 0.04 0.42 5.98 -103.54 -0.62 -0.20 16 28 C -0.12 -1.06 8.34 36.01 0.30 -0.76 16 29 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 30 H 0.09 0.30 7.90 -51.92 -0.41 -0.11 16 31 H 0.08 0.27 7.90 -51.93 -0.41 -0.14 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.51 8.13 -51.93 -0.42 0.09 16 34 H 0.10 0.84 7.37 -51.93 -0.38 0.46 16 35 H 0.41 7.36 5.34 -40.82 -0.22 7.14 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.07 0.94 7.52 -51.93 -0.39 0.55 16 39 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 40 H 0.02 0.65 7.99 -51.93 -0.41 0.23 16 41 H 0.07 1.99 7.16 -51.93 -0.37 1.61 16 42 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 45 H 0.07 0.39 6.20 -51.93 -0.32 0.07 16 46 H 0.10 1.02 7.62 -51.93 -0.40 0.62 16 47 H 0.10 0.98 7.34 -51.93 -0.38 0.60 16 LS Contribution 380.89 15.07 5.74 5.74 Total: -1.00 -35.93 380.89 -7.53 -43.46 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.01 Total: 4.18 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -1.19 Total: 9.96 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -0.19 Total: -63.31 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: 0.14 Total: -17.91 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.93 -7.53 -43.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970250054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.703 kcal (2) G-P(sol) polarization free energy of solvation -35.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds