Wall clock time and date at job start Tue Mar 31 2020 19:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30520 * 119.70124 * 2 1 4 4 N 1.28267 * 122.98363 * 179.97438 * 3 2 1 5 5 C 1.46498 * 119.03353 * 180.02562 * 4 3 2 6 6 C 1.34686 * 121.93763 * 0.02562 * 4 3 2 7 7 O 1.21901 * 120.46530 * 179.70485 * 6 4 3 8 8 C 1.42319 * 119.06514 * 359.97438 * 6 4 3 9 9 C 1.47410 * 121.29879 * 179.97438 * 8 6 4 10 10 O 1.21610 * 119.99641 * 174.23338 * 9 8 6 11 11 N 1.34773 * 120.00275 * 354.23467 * 9 8 6 12 12 C 1.46500 * 119.99945 * 185.09514 * 11 9 8 13 13 H 1.08999 * 109.47586 * 34.99459 * 12 11 9 14 14 C 1.52998 * 109.46504 * 274.99096 * 12 11 9 15 15 C 1.53007 * 109.47016 * 154.99925 * 12 11 9 16 16 C 1.53944 * 113.73769 * 278.73564 * 15 12 11 17 17 N 1.47812 * 86.03506 * 222.08634 * 16 15 12 18 18 C 1.36937 * 134.45545 * 204.64553 * 17 16 15 19 19 H 1.08004 * 119.99888 * 179.86225 * 18 17 16 20 20 C 1.38815 * 120.00227 * 359.86565 * 18 17 16 21 21 N 1.31620 * 119.99619 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00109 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47173 * 59.99951 * 22 20 18 24 24 H 1.48498 * 109.47132 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47335 * 299.99832 * 22 20 18 26 26 C 1.47581 * 91.05016 * 24.54697 * 17 16 15 27 27 C 1.39316 * 117.40024 * 359.97438 * 8 6 4 28 28 C 1.50703 * 120.99136 * 179.97438 * 27 8 6 29 29 H 1.08995 * 109.47144 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.47009 * 120.00589 * 1 2 3 31 31 H 1.09001 * 109.47345 * 239.99899 * 1 2 3 32 32 H 1.09002 * 109.47163 * 270.02045 * 5 4 3 33 33 H 1.08995 * 109.47393 * 30.01471 * 5 4 3 34 34 H 1.08996 * 109.47482 * 150.02339 * 5 4 3 35 35 H 0.97000 * 119.99917 * 5.08652 * 11 9 8 36 36 H 1.08997 * 109.47768 * 299.99967 * 14 12 11 37 37 H 1.09003 * 109.47343 * 60.00724 * 14 12 11 38 38 H 1.09000 * 109.47066 * 179.97438 * 14 12 11 39 39 H 1.08999 * 112.94721 * 50.32794 * 15 12 11 40 40 H 1.08998 * 113.76995 * 336.35183 * 16 15 12 41 41 H 1.08998 * 113.76801 * 107.74697 * 16 15 12 42 42 H 0.96997 * 119.99685 * 179.97438 * 21 20 18 43 43 H 1.08997 * 113.76848 * 221.14809 * 26 17 16 44 44 H 1.09006 * 113.86373 * 89.77178 * 26 17 16 45 45 H 1.09005 * 109.46988 * 180.02562 * 28 27 8 46 46 H 1.09004 * 109.47157 * 300.02470 * 28 27 8 47 47 H 1.08998 * 109.46992 * 60.02519 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1537 1.1337 0.0000 4 7 3.4343 1.2072 0.0005 5 6 4.0708 2.5267 0.0010 6 6 4.2110 0.1069 0.0005 7 8 5.4258 0.2079 -0.0044 8 6 3.5935 -1.1754 0.0006 9 6 4.3961 -2.4119 0.0000 10 8 3.8482 -3.4924 0.1059 11 7 5.7370 -2.3449 -0.1177 12 6 6.5247 -3.5749 -0.2306 13 1 5.9618 -4.3162 -0.7978 14 6 6.8217 -4.1203 1.1677 15 6 7.8407 -3.2735 -0.9506 16 6 7.7107 -3.2218 -2.4836 17 7 8.9830 -3.9736 -2.5143 18 6 9.9935 -4.1118 -3.4280 19 1 10.8437 -4.7384 -3.2022 20 6 9.9251 -3.4466 -4.6445 21 7 8.8892 -2.6826 -4.9194 22 14 11.3039 -3.6347 -5.8906 23 1 11.4363 -5.0641 -6.2704 24 1 10.9933 -2.8279 -7.0980 25 1 12.5785 -3.1609 -5.2939 26 6 8.7282 -4.5130 -1.1644 27 6 2.2010 -1.2164 0.0011 28 6 1.4633 -2.5305 0.0006 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5140 -0.8900 31 1 -0.3634 -0.5138 0.8900 32 1 4.2287 2.8543 -1.0265 33 1 3.4270 3.2404 0.5150 34 1 5.0302 2.4671 0.5148 35 1 6.1805 -1.4823 -0.1279 36 1 7.3847 -3.3790 1.7348 37 1 5.8842 -4.3350 1.6807 38 1 7.4074 -5.0357 1.0838 39 1 8.3718 -2.4215 -0.5262 40 1 6.8599 -3.7820 -2.8715 41 1 7.7834 -2.2159 -2.8970 42 1 8.8416 -2.2175 -5.7692 43 1 9.6117 -4.5362 -0.5266 44 1 8.1772 -5.4536 -1.1621 45 1 0.3893 -2.3443 0.0007 46 1 1.7335 -3.0985 -0.8896 47 1 1.7336 -3.0992 0.8904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970250054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:03 Heat of formation + Delta-G solvation = 24.841023 kcal Electronic energy + Delta-G solvation = -29481.466261 eV Core-core repulsion = 25473.808377 eV Total energy + Delta-G solvation = -4007.657884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.31227 -40.99028 -39.71239 -39.34283 -36.96471 -36.12132 -34.18978 -33.43866 -32.16476 -31.16862 -29.40054 -29.03875 -27.44892 -26.68965 -25.89014 -25.37055 -23.39753 -22.93615 -21.75287 -20.86440 -19.79601 -18.83621 -18.52142 -17.98692 -17.75456 -17.21446 -16.92763 -16.75670 -15.97397 -15.78239 -15.61662 -15.03071 -14.91786 -14.87620 -14.76264 -14.46670 -14.20551 -14.07849 -13.74794 -13.70341 -13.44245 -13.39123 -13.27719 -13.12765 -12.90852 -12.90052 -12.73347 -12.68626 -12.58380 -12.40444 -12.03469 -11.77855 -11.54980 -11.30541 -11.20469 -10.97634 -10.89699 -10.71445 -10.00913 -9.61617 -8.95890 -7.92201 -5.27103 -1.01603 0.37458 1.06734 1.42037 1.46953 1.52924 1.54200 2.14405 2.38816 2.45441 2.79937 3.25443 3.28735 3.35086 3.48324 3.63343 3.75252 3.88435 4.06914 4.25123 4.29902 4.33171 4.33350 4.43906 4.48075 4.53742 4.67268 4.69722 4.73566 4.74957 4.78385 4.84455 4.88818 4.91775 4.97628 5.02660 5.05096 5.20761 5.24747 5.29637 5.42589 5.45898 5.54317 5.62649 5.89419 6.26908 6.61048 6.87580 6.93296 7.19866 7.57900 8.54162 9.24644 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014647 B = 0.002962 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.248801 B = 9450.563742 C =10221.248483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.058 3.942 3 N -0.206 5.206 4 N -0.342 5.342 5 C 0.073 3.927 6 C 0.484 3.516 7 O -0.556 6.556 8 C -0.269 4.269 9 C 0.570 3.430 10 O -0.559 6.559 11 N -0.708 5.708 12 C 0.157 3.843 13 H 0.068 0.932 14 C -0.147 4.147 15 C -0.114 4.114 16 C 0.170 3.830 17 N -0.643 5.643 18 C -0.238 4.238 19 H 0.088 0.912 20 C -0.073 4.073 21 N -0.957 5.957 22 Si 0.984 3.016 23 H -0.275 1.275 24 H -0.294 1.294 25 H -0.273 1.273 26 C 0.135 3.865 27 C 0.062 3.938 28 C -0.117 4.117 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.411 0.589 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.007 0.993 41 H 0.033 0.967 42 H 0.247 0.753 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.118 0.882 46 H 0.081 0.919 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.180 8.702 15.481 27.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 N -0.031 5.031 4 N -0.160 5.160 5 C -0.065 4.065 6 C 0.284 3.716 7 O -0.438 6.438 8 C -0.283 4.283 9 C 0.357 3.643 10 O -0.440 6.440 11 N -0.366 5.366 12 C 0.052 3.948 13 H 0.086 0.914 14 C -0.205 4.205 15 C -0.134 4.134 16 C 0.045 3.955 17 N -0.370 5.370 18 C -0.366 4.366 19 H 0.106 0.894 20 C -0.265 4.265 21 N -0.606 5.606 22 Si 0.812 3.188 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.199 1.199 26 C 0.010 3.990 27 C 0.053 3.947 28 C -0.173 4.173 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.144 0.856 34 H 0.114 0.886 35 H 0.255 0.745 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.025 0.975 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.137 0.863 46 H 0.099 0.901 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.680 9.068 15.248 27.247 hybrid contribution 1.575 -0.361 -1.248 2.042 sum -19.106 8.707 14.000 25.236 Atomic orbital electron populations 1.20850 0.82104 1.06004 1.05641 1.22523 1.00152 0.85389 1.03055 1.70803 0.94255 1.29347 1.08732 1.46705 1.02345 1.10275 1.56720 1.22466 0.99675 0.78796 1.05603 1.18017 0.87971 0.85783 0.79801 1.90696 1.13432 1.85651 1.53992 1.21473 0.95646 0.93176 1.18019 1.17617 0.82399 0.87634 0.76639 1.90719 1.71879 1.29388 1.52060 1.46597 1.06401 1.11617 1.71971 1.20925 0.90322 0.86135 0.97398 0.91358 1.22029 1.01874 1.01841 0.94744 1.23433 0.95108 0.99646 0.95246 1.22111 0.86725 0.95193 0.91519 1.46393 1.19402 1.54790 1.16409 1.19469 0.97793 1.23882 0.95460 0.89438 1.25739 1.00772 1.00050 0.99946 1.70054 1.31750 1.34954 1.23825 0.85069 0.78398 0.77567 0.77798 1.20140 1.22067 1.19924 1.22661 0.96411 0.94472 0.85428 1.22051 0.91340 0.99310 0.81974 1.21163 1.01110 0.90604 1.04392 0.88799 0.87738 0.87245 0.89182 0.85642 0.88591 0.74491 0.91843 0.92556 0.90044 0.89265 0.97523 0.94854 0.94398 0.91652 0.93111 0.86339 0.90076 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 8.74 71.24 0.62 0.18 16 2 C 0.06 0.89 6.87 43.19 0.30 1.19 16 3 N -0.21 -3.76 10.74 -47.43 -0.51 -4.27 16 4 N -0.34 -7.62 3.62 -493.01 -1.78 -9.41 16 5 C 0.07 1.14 10.58 127.77 1.35 2.49 16 6 C 0.48 14.32 7.50 85.27 0.64 14.96 16 7 O -0.56 -19.43 13.42 -4.99 -0.07 -19.50 16 8 C -0.27 -7.80 5.95 -19.59 -0.12 -7.92 16 9 C 0.57 19.61 7.70 86.66 0.67 20.28 16 10 O -0.56 -19.99 13.48 -4.06 -0.05 -20.04 16 11 N -0.71 -25.54 5.00 -445.81 -2.23 -27.77 16 12 C 0.16 5.62 2.34 44.99 0.11 5.73 16 13 H 0.07 2.68 7.49 -2.39 -0.02 2.66 16 14 C -0.15 -4.25 9.31 71.98 0.67 -3.58 16 15 C -0.11 -4.69 3.47 -10.14 -0.04 -4.73 16 16 C 0.17 9.01 7.08 86.44 0.61 9.62 16 17 N -0.64 -35.51 3.70 -716.19 -2.65 -38.16 16 18 C -0.24 -14.11 10.70 84.03 0.90 -13.21 16 19 H 0.09 4.88 7.83 -2.91 -0.02 4.85 16 20 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 21 N -0.96 -61.38 11.39 21.65 0.25 -61.13 16 22 Si 0.98 47.75 29.55 68.60 2.03 49.78 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 25 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 26 C 0.14 5.72 7.64 86.48 0.66 6.38 16 27 C 0.06 1.26 5.98 -19.17 -0.11 1.15 16 28 C -0.12 -1.87 8.34 71.24 0.59 -1.28 16 29 H 0.09 0.35 8.10 -2.39 -0.02 0.33 16 30 H 0.10 0.24 7.90 -2.38 -0.02 0.22 16 31 H 0.11 0.12 7.90 -2.39 -0.02 0.10 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.13 1.13 8.13 -2.39 -0.02 1.11 16 34 H 0.10 1.63 7.37 -2.39 -0.02 1.61 16 35 H 0.41 15.47 5.34 -92.71 -0.49 14.97 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.63 8.09 -2.39 -0.02 1.61 16 38 H 0.08 2.11 7.52 -2.39 -0.02 2.10 16 39 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 40 H 0.01 0.39 7.99 -2.39 -0.02 0.37 16 41 H 0.03 1.99 7.16 -2.39 -0.02 1.97 16 42 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.05 2.02 8.10 -2.38 -0.02 2.00 16 45 H 0.12 0.79 6.20 -2.38 -0.01 0.78 16 46 H 0.08 1.65 7.62 -2.39 -0.02 1.63 16 47 H 0.09 1.70 7.34 -2.39 -0.02 1.68 16 Total: -1.00 -81.91 380.89 2.79 -79.11 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.50 Total: 24.02 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 7.32 Total: 27.35 kcal Atomic # 7 Polarization: -133.80 SS G_CDS: -6.93 Total: -140.73 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -0.12 Total: -39.54 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -81.91 2.79 -79.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970250054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.956 kcal (2) G-P(sol) polarization free energy of solvation -81.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds