Wall clock time and date at job start Tue Mar 31 2020 19:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30531 * 119.70338 * 2 1 4 4 N 1.28262 * 122.98881 * 179.97438 * 3 2 1 5 5 C 1.46497 * 119.03557 * 180.02562 * 4 3 2 6 6 C 1.34685 * 121.93224 * 359.72163 * 4 3 2 7 7 O 1.21905 * 120.46471 * 180.29186 * 6 4 3 8 8 C 1.42321 * 119.06892 * 0.53480 * 6 4 3 9 9 C 1.47413 * 121.30216 * 179.76445 * 8 6 4 10 10 O 1.21606 * 119.99829 * 75.66390 * 9 8 6 11 11 N 1.34776 * 119.99942 * 255.65759 * 9 8 6 12 12 C 1.47428 * 125.64707 * 4.51858 * 11 9 8 13 13 C 1.54905 * 104.92725 * 204.15146 * 12 11 9 14 14 C 1.55153 * 101.58422 * 322.93724 * 13 12 11 15 15 H 1.09001 * 110.72096 * 276.96292 * 14 13 12 16 16 N 1.46504 * 110.72314 * 153.86433 * 14 13 12 17 17 C 1.46499 * 119.99824 * 301.45285 * 16 14 13 18 18 C 1.36937 * 120.00095 * 121.45571 * 16 14 13 19 19 H 1.08003 * 119.99426 * 324.40135 * 18 16 14 20 20 C 1.38807 * 120.00234 * 144.40427 * 18 16 14 21 21 N 1.31618 * 120.00051 * 158.15534 * 20 18 16 22 22 Si 1.86807 * 119.99730 * 338.15589 * 20 18 16 23 23 H 1.48497 * 109.46946 * 95.45043 * 22 20 18 24 24 H 1.48506 * 109.46693 * 215.44730 * 22 20 18 25 25 H 1.48495 * 109.47202 * 335.44785 * 22 20 18 26 26 C 1.47289 * 125.79330 * 184.51320 * 11 9 8 27 27 C 1.39330 * 117.39586 * 359.48883 * 8 6 4 28 28 C 1.50696 * 120.98731 * 180.27306 * 27 8 6 29 29 H 1.09003 * 109.47321 * 270.02284 * 1 2 3 30 30 H 1.09000 * 109.47120 * 30.02077 * 1 2 3 31 31 H 1.09001 * 109.46959 * 150.01975 * 1 2 3 32 32 H 1.09006 * 109.46994 * 0.02562 * 5 4 3 33 33 H 1.08996 * 109.47326 * 119.99919 * 5 4 3 34 34 H 1.08995 * 109.47102 * 240.00063 * 5 4 3 35 35 H 1.09002 * 110.36840 * 85.25778 * 12 11 9 36 36 H 1.08996 * 110.36986 * 323.04513 * 12 11 9 37 37 H 1.09006 * 111.00286 * 81.01171 * 13 12 11 38 38 H 1.09003 * 111.00815 * 204.82383 * 13 12 11 39 39 H 1.09011 * 109.47055 * 86.49793 * 17 16 14 40 40 H 1.09003 * 109.47066 * 206.49559 * 17 16 14 41 41 H 1.08998 * 109.47378 * 326.49715 * 17 16 14 42 42 H 0.96995 * 120.00097 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.85361 * 59.50911 * 26 11 9 44 44 H 1.09000 * 110.00437 * 298.43563 * 26 11 9 45 45 H 1.09003 * 109.46964 * 88.59175 * 28 27 8 46 46 H 1.09003 * 109.47028 * 208.58538 * 28 27 8 47 47 H 1.09001 * 109.47690 * 328.59031 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1538 1.1338 0.0000 4 7 3.4343 1.2073 0.0005 5 6 4.0707 2.5268 0.0010 6 6 4.2110 0.1070 0.0066 7 8 5.4258 0.2080 0.0122 8 6 3.5935 -1.1753 0.0011 9 6 4.3961 -2.4118 0.0022 10 8 4.9412 -2.7820 1.0243 11 7 4.5256 -3.1321 -1.1296 12 6 4.0005 -2.7532 -2.4540 13 6 3.8443 -4.0911 -3.2190 14 6 5.0834 -4.8811 -2.7212 15 1 5.9704 -4.6075 -3.2925 16 7 4.8437 -6.3243 -2.7993 17 6 3.7204 -6.9207 -2.0721 18 6 5.6696 -7.1158 -3.5519 19 1 6.0828 -6.7398 -4.4763 20 6 5.9757 -8.4013 -3.1270 21 7 6.3871 -9.3010 -3.9951 22 14 5.8039 -8.8543 -1.3228 23 1 4.4794 -9.4860 -1.0951 24 1 6.8784 -9.8082 -0.9475 25 1 5.9174 -7.6289 -0.4918 26 6 5.2146 -4.4282 -1.2517 27 6 2.2008 -1.2163 0.0005 28 6 1.4633 -2.5304 0.0010 29 1 -0.3634 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 3.3029 3.3005 0.0014 33 1 4.6910 2.6307 0.8912 34 1 4.6917 2.6310 -0.8887 35 1 4.7059 -2.1015 -2.9696 36 1 3.0341 -2.2596 -2.3520 37 1 2.9201 -4.5962 -2.9381 38 1 3.8885 -3.9325 -4.2966 39 1 2.8209 -6.8673 -2.6857 40 1 3.9455 -7.9632 -1.8473 41 1 3.5588 -6.3752 -1.1423 42 1 6.6006 -10.1993 -3.6983 43 1 4.7450 -5.1604 -0.5948 44 1 6.2670 -4.3171 -0.9905 45 1 1.3071 -2.8590 1.0285 46 1 0.4987 -2.4059 -0.4912 47 1 2.0505 -3.2769 -0.5339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972055951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:00 Heat of formation + Delta-G solvation = 39.361995 kcal Electronic energy + Delta-G solvation = -30091.031919 eV Core-core repulsion = 26084.003711 eV Total energy + Delta-G solvation = -4007.028208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.40609 -39.86245 -38.28430 -37.62438 -36.17412 -35.00203 -32.83343 -31.79148 -30.98149 -30.21025 -28.50341 -28.32861 -26.73690 -26.27772 -25.15662 -23.33860 -22.56495 -22.37652 -20.04228 -19.34210 -18.75202 -17.69589 -17.17664 -17.07255 -16.68762 -16.12720 -16.04628 -15.36624 -15.06615 -14.55971 -14.27481 -14.07701 -13.89132 -13.66536 -13.58763 -13.43090 -13.17688 -13.11468 -12.95449 -12.86007 -12.58539 -12.39367 -12.35084 -12.18946 -12.12345 -11.93143 -11.86184 -11.49590 -10.98512 -10.87077 -10.58068 -10.39327 -10.25362 -10.12463 -9.98828 -9.77363 -9.61310 -8.69110 -8.59460 -8.46617 -6.97318 -6.06514 -3.49090 -0.02339 1.26306 1.79732 2.58662 2.85116 3.12220 3.27532 3.45887 3.50778 3.71253 4.05722 4.15387 4.32317 4.46139 4.71675 4.75861 4.79528 4.86108 4.94359 4.96360 5.07244 5.12043 5.17089 5.18232 5.23445 5.28610 5.36506 5.41427 5.49963 5.53828 5.57375 5.66888 5.70901 5.82339 5.89322 6.05603 6.22052 6.24244 6.36067 6.40227 6.60502 6.61908 6.73336 7.32879 7.58242 7.79764 7.93840 8.16480 8.28267 8.86865 9.61617 9.98900 11.08541 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020675 B = 0.003153 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.995302 B = 8877.660538 C = 9208.742500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.060 3.940 3 N -0.214 5.214 4 N -0.344 5.344 5 C 0.085 3.915 6 C 0.497 3.503 7 O -0.514 6.514 8 C -0.197 4.197 9 C 0.597 3.403 10 O -0.524 6.524 11 N -0.603 5.603 12 C 0.099 3.901 13 C -0.148 4.148 14 C 0.172 3.828 15 H 0.090 0.910 16 N -0.595 5.595 17 C 0.107 3.893 18 C -0.275 4.275 19 H 0.084 0.916 20 C 0.037 3.963 21 N -0.897 5.897 22 Si 0.882 3.118 23 H -0.286 1.286 24 H -0.301 1.301 25 H -0.268 1.268 26 C 0.083 3.917 27 C 0.004 3.996 28 C -0.135 4.135 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.020 0.980 40 H 0.048 0.952 41 H 0.031 0.969 42 H 0.265 0.735 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.524 22.190 5.919 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 N -0.039 5.039 4 N -0.165 5.165 5 C -0.055 4.055 6 C 0.294 3.706 7 O -0.390 6.390 8 C -0.213 4.213 9 C 0.383 3.617 10 O -0.400 6.400 11 N -0.337 5.337 12 C -0.024 4.024 13 C -0.188 4.188 14 C 0.062 3.938 15 H 0.108 0.892 16 N -0.316 5.316 17 C -0.038 4.038 18 C -0.403 4.403 19 H 0.101 0.899 20 C -0.164 4.164 21 N -0.538 5.538 22 Si 0.713 3.287 23 H -0.214 1.214 24 H -0.229 1.229 25 H -0.193 1.193 26 C -0.040 4.040 27 C -0.003 4.003 28 C -0.192 4.192 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.038 0.962 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.454 22.827 6.486 27.786 hybrid contribution 0.314 -1.042 1.101 1.548 sum -14.141 21.784 7.587 27.057 Atomic orbital electron populations 1.20621 0.85825 1.04358 1.03868 1.21614 0.98007 0.86561 1.04811 1.70619 0.95154 1.28864 1.09308 1.46604 1.01962 1.09881 1.58035 1.22160 0.98672 0.79964 1.04671 1.17575 0.88070 0.84433 0.80492 1.90993 1.11971 1.85770 1.50242 1.21438 0.93925 0.94633 1.11307 1.16866 0.80175 0.81742 0.82897 1.90825 1.46959 1.70063 1.32138 1.48483 1.55172 1.22245 1.07805 1.22387 0.98439 0.98476 0.83146 1.23295 1.01386 0.93992 1.00114 1.21523 0.96057 0.84911 0.91259 0.89163 1.44059 1.29397 1.01772 1.56404 1.21353 0.90490 0.97532 0.94394 1.18809 1.25013 0.95206 1.01274 0.89891 1.25445 0.97222 0.96507 0.97250 1.69847 1.47093 1.03420 1.33427 0.86897 0.76020 0.78091 0.87735 1.21428 1.22900 1.19300 1.22985 0.97205 0.82558 1.01289 1.21458 0.92137 0.97414 0.89267 1.21167 1.01020 0.92474 1.04515 0.89858 0.89941 0.89462 0.88073 0.89522 0.89428 0.91381 0.91534 0.90561 0.89862 0.96213 0.93374 0.95021 0.92531 0.90913 0.91376 0.88741 0.89023 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.39 9.81 36.00 0.35 -0.03 16 2 C 0.06 0.52 6.87 -82.48 -0.57 -0.05 16 3 N -0.21 -2.09 10.71 33.66 0.36 -1.73 16 4 N -0.34 -3.92 3.62 -69.83 -0.25 -4.17 16 5 C 0.09 0.65 10.21 59.85 0.61 1.27 16 6 C 0.50 7.55 7.50 -14.73 -0.11 7.44 16 7 O -0.51 -9.55 16.63 5.01 0.08 -9.47 16 8 C -0.20 -2.89 4.73 -104.19 -0.49 -3.38 16 9 C 0.60 10.69 5.84 -12.53 -0.07 10.62 16 10 O -0.52 -11.50 17.45 5.27 0.09 -11.40 16 11 N -0.60 -9.98 2.86 -171.57 -0.49 -10.47 16 12 C 0.10 1.31 6.36 -2.53 -0.02 1.29 16 13 C -0.15 -2.13 6.65 -24.59 -0.16 -2.29 16 14 C 0.17 3.20 3.45 -66.09 -0.23 2.97 16 15 H 0.09 1.72 7.95 -51.93 -0.41 1.31 16 16 N -0.59 -13.40 2.53 -171.38 -0.43 -13.83 16 17 C 0.11 2.22 8.28 59.85 0.50 2.71 16 18 C -0.27 -7.40 9.89 -15.06 -0.15 -7.55 16 19 H 0.08 2.38 8.06 -52.48 -0.42 1.96 16 20 C 0.04 1.04 5.31 -17.43 -0.09 0.95 16 21 N -0.90 -26.88 13.97 55.49 0.78 -26.11 16 22 Si 0.88 22.15 24.91 -169.99 -4.23 17.91 16 23 H -0.29 -6.93 6.67 56.52 0.38 -6.55 16 24 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.08 1.56 6.47 -2.92 -0.02 1.54 16 27 C 0.00 0.04 5.36 -103.55 -0.56 -0.52 16 28 C -0.14 -1.11 9.14 36.00 0.33 -0.78 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.24 6.03 -51.93 -0.31 -0.07 16 32 H 0.10 0.49 8.05 -51.93 -0.42 0.07 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.73 6.63 -51.93 -0.34 0.38 16 37 H 0.08 1.08 7.15 -51.93 -0.37 0.71 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.02 0.38 7.95 -51.92 -0.41 -0.04 16 40 H 0.05 1.10 3.14 -51.93 -0.16 0.94 16 41 H 0.03 0.59 6.15 -51.93 -0.32 0.27 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.07 1.46 5.99 -51.93 -0.31 1.15 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.09 0.44 6.03 -51.93 -0.31 0.13 16 47 H 0.09 0.88 6.25 -51.93 -0.32 0.56 16 LS Contribution 372.24 15.07 5.61 5.61 Total: -1.00 -36.66 372.24 -5.84 -42.49 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -6.67 Total: -3.02 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: -0.68 Total: 14.19 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.04 Total: -56.31 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.18 Total: -20.87 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.23 Total: 17.91 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.66 -5.84 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972055951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.856 kcal (2) G-P(sol) polarization free energy of solvation -36.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds