Wall clock time and date at job start Tue Mar 31 2020 19:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31885 * 119.93403 * 2 1 4 4 N 1.28274 * 122.62729 * 179.97438 * 3 2 1 5 5 C 1.32487 * 122.21684 * 359.97438 * 4 3 2 6 6 O 1.35445 * 120.25146 * 179.97438 * 5 4 3 7 7 C 1.40456 * 119.49520 * 0.02562 * 5 4 3 8 8 C 1.47828 * 121.17601 * 179.97438 * 7 5 4 9 9 O 1.21553 * 120.00225 * 89.99877 * 8 7 5 10 10 N 1.34777 * 119.99791 * 269.71839 * 8 7 5 11 11 C 1.46499 * 120.00199 * 180.27503 * 10 8 7 12 12 H 1.09001 * 110.63689 * 31.86171 * 11 10 8 13 13 C 1.54325 * 110.72059 * 268.52729 * 11 10 8 14 14 N 1.47022 * 107.26975 * 263.82326 * 13 11 10 15 15 C 1.36933 * 125.64723 * 181.02314 * 14 13 11 16 16 H 1.08006 * 120.00000 * 180.02562 * 15 14 13 17 17 C 1.38810 * 120.00070 * 0.04521 * 15 14 13 18 18 N 1.31618 * 120.00074 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00098 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47033 * 60.00112 * 19 17 15 21 21 H 1.48497 * 109.47284 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47262 * 300.00469 * 19 17 15 23 23 C 1.47425 * 108.70258 * 1.06677 * 14 13 11 24 24 C 1.54902 * 104.83152 * 335.86360 * 23 14 13 25 25 C 1.52998 * 111.00976 * 278.93873 * 24 23 14 26 26 C 1.53000 * 111.00461 * 155.08605 * 24 23 14 27 27 C 1.38479 * 119.93534 * 180.23670 * 2 1 3 28 28 C 1.50704 * 121.06015 * 0.04380 * 27 2 1 29 29 H 1.08999 * 109.47441 * 90.00418 * 1 2 3 30 30 H 1.09001 * 109.47276 * 209.99869 * 1 2 3 31 31 H 1.08994 * 109.47551 * 330.00175 * 1 2 3 32 32 H 0.96705 * 113.99850 * 270.02149 * 6 5 4 33 33 H 0.97001 * 119.99727 * 0.28399 * 10 8 7 34 34 H 1.09001 * 109.88327 * 23.24566 * 13 11 10 35 35 H 1.09007 * 109.87834 * 144.41296 * 13 11 10 36 36 H 0.96997 * 120.00195 * 180.02562 * 18 17 15 37 37 H 1.09001 * 110.36014 * 217.03073 * 23 14 13 38 38 H 1.08999 * 110.36934 * 94.70751 * 23 14 13 39 39 H 1.08999 * 109.47810 * 172.19341 * 25 24 23 40 40 H 1.09001 * 109.47155 * 292.19987 * 25 24 23 41 41 H 1.09005 * 109.46792 * 52.19709 * 25 24 23 42 42 H 1.08998 * 109.47347 * 307.80902 * 26 24 23 43 43 H 1.09004 * 109.47241 * 67.80826 * 26 24 23 44 44 H 1.09002 * 109.47347 * 187.80516 * 26 24 23 45 45 H 1.08999 * 109.47196 * 270.22722 * 28 27 2 46 46 H 1.09003 * 109.46716 * 30.22016 * 28 27 2 47 47 H 1.08992 * 109.47610 * 150.22425 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1650 1.1429 0.0000 4 7 3.4464 1.2032 0.0005 5 6 4.2046 0.1167 0.0015 6 8 5.5545 0.2267 0.0015 7 6 3.5978 -1.1500 0.0016 8 6 4.4079 -2.3866 0.0021 9 8 4.7406 -2.8947 1.0550 10 7 4.7728 -2.9536 -1.1648 11 6 5.5705 -4.1824 -1.1643 12 1 5.3295 -4.7965 -0.2966 13 6 7.0780 -3.8547 -1.2046 14 7 7.5039 -3.9313 -2.6097 15 6 8.7773 -3.7268 -3.0698 16 1 8.9890 -3.8059 -4.1260 17 6 9.7960 -3.4182 -2.1789 18 7 9.5382 -3.3226 -0.8918 19 14 11.5333 -3.1398 -2.8066 20 1 11.5378 -2.0045 -3.7640 21 1 12.4283 -2.8265 -1.6639 22 1 12.0147 -4.3664 -3.4913 23 6 6.3328 -4.2638 -3.4412 24 6 5.3527 -4.9788 -2.4780 25 6 5.7355 -6.4491 -2.2978 26 6 3.9090 -4.8462 -2.9667 27 6 2.1980 -1.2000 -0.0050 28 6 1.4672 -2.5180 -0.0114 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 5.9466 0.2582 -0.8820 33 1 4.5073 -2.5480 -2.0050 34 1 7.2493 -2.8495 -0.8195 35 1 7.6313 -4.5813 -0.6094 36 1 10.2500 -3.1066 -0.2693 37 1 6.6214 -4.9314 -4.2531 38 1 5.8795 -3.3557 -3.8385 39 1 5.1198 -6.8916 -1.5147 40 1 5.5732 -6.9841 -3.2335 41 1 6.7864 -6.5191 -2.0167 42 1 3.6834 -3.7962 -3.1532 43 1 3.7839 -5.4140 -3.8887 44 1 3.2309 -5.2340 -2.2064 45 1 1.2868 -2.8385 1.0147 46 1 0.5148 -2.4028 -0.5288 47 1 2.0714 -3.2660 -0.5247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974892606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:57 Heat of formation + Delta-G solvation = -21.785829 kcal Electronic energy + Delta-G solvation = -30400.177169 eV Core-core repulsion = 26390.497393 eV Total energy + Delta-G solvation = -4009.679776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.67481 -41.17836 -39.51657 -38.92906 -36.05254 -35.72629 -34.63254 -33.65636 -32.60718 -30.12409 -29.55077 -28.95860 -28.05087 -27.41620 -25.97510 -24.71043 -23.79794 -22.37814 -21.64664 -20.34153 -20.11790 -19.28823 -18.69656 -18.57001 -17.65225 -17.08685 -16.67621 -16.05338 -15.81893 -15.75388 -15.51262 -15.37622 -15.02729 -14.77132 -14.44449 -14.11859 -14.00637 -13.90214 -13.81265 -13.56861 -13.45471 -13.30654 -13.14651 -12.96433 -12.89688 -12.82756 -12.65672 -12.59753 -12.29962 -12.19305 -11.90855 -11.79682 -11.58613 -11.54614 -11.33753 -11.05122 -10.75100 -10.57036 -10.53121 -10.15966 -8.89012 -7.83629 -5.19839 -0.71075 -0.44589 1.22059 1.44246 1.46501 1.53359 1.84962 2.03690 2.24745 2.48801 2.96293 3.25196 3.29657 3.35405 3.47932 3.60004 3.71855 3.79997 3.94831 4.06023 4.09942 4.33703 4.38141 4.49855 4.58804 4.65640 4.67799 4.78253 4.80904 4.85378 4.88336 4.95484 4.97812 5.01684 5.04808 5.11891 5.16958 5.24967 5.34069 5.37094 5.46324 5.56913 5.65404 5.73610 6.17403 6.20372 6.31686 6.96507 7.08971 7.42876 7.78377 8.41670 9.24842 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.003943 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.780633 B = 7098.683930 C = 8397.030281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.064 3.936 3 N -0.230 5.230 4 N -0.284 5.284 5 C 0.276 3.724 6 O -0.485 6.485 7 C -0.161 4.161 8 C 0.579 3.421 9 O -0.563 6.563 10 N -0.681 5.681 11 C 0.136 3.864 12 H 0.085 0.915 13 C 0.191 3.809 14 N -0.619 5.619 15 C -0.237 4.237 16 H 0.086 0.914 17 C -0.065 4.065 18 N -0.950 5.950 19 Si 0.973 3.027 20 H -0.276 1.276 21 H -0.302 1.302 22 H -0.276 1.276 23 C 0.137 3.863 24 C -0.073 4.073 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.015 4.015 28 C -0.125 4.125 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.422 0.578 33 H 0.410 0.590 34 H 0.003 0.997 35 H 0.006 0.994 36 H 0.242 0.758 37 H 0.048 0.952 38 H 0.031 0.969 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.028 0.972 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.129 0.871 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.136 -0.815 -4.569 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.082 4.082 3 N -0.074 5.074 4 N -0.135 5.135 5 C 0.090 3.910 6 O -0.293 6.293 7 C -0.176 4.176 8 C 0.364 3.636 9 O -0.441 6.441 10 N -0.332 5.332 11 C 0.031 3.969 12 H 0.103 0.897 13 C 0.065 3.935 14 N -0.345 5.345 15 C -0.366 4.366 16 H 0.104 0.896 17 C -0.258 4.258 18 N -0.599 5.599 19 Si 0.802 3.198 20 H -0.202 1.202 21 H -0.228 1.228 22 H -0.202 1.202 23 C 0.012 3.988 24 C -0.074 4.074 25 C -0.182 4.182 26 C -0.182 4.182 27 C -0.027 4.027 28 C -0.182 4.182 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.284 0.716 33 H 0.247 0.753 34 H 0.022 0.978 35 H 0.024 0.976 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.047 0.953 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.118 0.882 46 H 0.148 0.852 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.663 0.480 -3.188 23.882 hybrid contribution 2.481 -0.709 -0.461 2.621 sum -21.182 -0.229 -3.649 21.495 Atomic orbital electron populations 1.20962 0.82953 1.05950 1.05836 1.23492 1.01446 0.88068 0.95195 1.72749 0.99606 1.26181 1.08859 1.73004 1.00455 1.26789 1.13220 1.21022 0.86224 0.88786 0.94967 1.84754 1.13522 1.95224 1.35789 1.21337 0.96015 0.93988 1.06232 1.17813 0.78819 0.82810 0.84198 1.90823 1.56589 1.63945 1.32771 1.45773 1.52855 1.26794 1.07753 1.22219 0.90444 0.84882 0.99369 0.89678 1.21101 0.89530 0.97161 0.85727 1.44642 1.04556 1.82565 1.02720 1.19399 0.84550 1.39790 0.92894 0.89616 1.25597 1.01836 1.02702 0.95642 1.70202 1.31817 1.56025 1.01887 0.85233 0.79864 0.78256 0.76470 1.20228 1.22833 1.20176 1.21913 0.87041 0.96376 0.93455 1.22001 0.97300 0.95419 0.92704 1.21598 1.00436 0.93391 1.02746 1.21671 0.91915 1.02405 1.02201 1.21545 0.90119 0.99817 0.91209 1.21195 1.02015 0.89677 1.05273 0.87070 0.87073 0.89368 0.71631 0.75297 0.97837 0.97562 0.94837 0.93400 0.95167 0.91320 0.90276 0.95283 0.92013 0.90302 0.90992 0.88208 0.85236 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 9.42 71.23 0.67 -0.12 16 2 C 0.06 1.22 6.86 42.61 0.29 1.51 16 3 N -0.23 -6.17 11.40 -47.73 -0.54 -6.72 16 4 N -0.28 -9.12 11.52 -169.57 -1.95 -11.08 16 5 C 0.28 8.98 7.88 85.13 0.67 9.65 16 6 O -0.48 -17.02 13.09 -87.41 -1.14 -18.16 16 7 C -0.16 -4.62 5.69 -19.75 -0.11 -4.73 16 8 C 0.58 19.49 5.62 86.78 0.49 19.98 16 9 O -0.56 -24.37 16.75 -3.88 -0.07 -24.43 16 10 N -0.68 -20.44 4.45 -439.80 -1.96 -22.40 16 11 C 0.14 4.83 2.59 46.18 0.12 4.95 16 12 H 0.09 3.19 7.45 -2.39 -0.02 3.17 16 13 C 0.19 9.43 4.79 86.73 0.42 9.85 16 14 N -0.62 -29.93 3.38 -691.99 -2.34 -32.27 16 15 C -0.24 -12.89 10.28 84.03 0.86 -12.03 16 16 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 17 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16 18 N -0.95 -58.70 10.31 21.65 0.22 -58.47 16 19 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 C 0.14 4.83 6.12 86.85 0.53 5.37 16 24 C -0.07 -2.05 0.83 -50.79 -0.04 -2.09 16 25 C -0.12 -3.44 8.57 71.98 0.62 -2.82 16 26 C -0.12 -2.20 8.22 71.98 0.59 -1.61 16 27 C -0.02 -0.30 5.96 -19.36 -0.12 -0.42 16 28 C -0.13 -1.45 8.92 71.24 0.64 -0.82 16 29 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.11 0.31 6.80 -2.39 -0.02 0.30 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.42 11.62 9.06 -74.05 -0.67 10.95 16 33 H 0.41 10.10 7.10 -92.71 -0.66 9.45 16 34 H 0.00 0.20 7.41 -2.39 -0.02 0.18 16 35 H 0.01 0.36 7.38 -2.38 -0.02 0.35 16 36 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.05 1.65 8.05 -2.39 -0.02 1.63 16 38 H 0.03 1.00 7.98 -2.39 -0.02 0.98 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.03 1.03 7.91 -2.38 -0.02 1.01 16 42 H 0.06 0.97 6.48 -2.39 -0.02 0.95 16 43 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.13 0.44 6.83 -2.39 -0.02 0.42 16 47 H 0.08 1.02 7.25 -2.39 -0.02 1.00 16 Total: -1.00 -82.90 381.84 0.03 -82.87 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.31 Total: 19.02 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: 6.09 Total: 23.46 kcal Atomic # 7 Polarization: -124.36 SS G_CDS: -6.57 Total: -130.94 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -1.21 Total: -42.59 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -82.90 0.03 -82.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974892606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.085 kcal (2) G-P(sol) polarization free energy of solvation -82.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds