Wall clock time and date at job start Tue Mar 31 2020 19:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31888 * 119.92902 * 2 1 4 4 N 1.28277 * 122.62512 * 180.30295 * 3 2 1 5 5 C 1.32482 * 122.21683 * 359.72000 * 4 3 2 6 6 O 1.35444 * 120.25291 * 179.97438 * 5 4 3 7 7 C 1.40456 * 119.49868 * 0.02562 * 5 4 3 8 8 C 1.47818 * 121.18221 * 180.02562 * 7 5 4 9 9 O 1.21558 * 120.00000 * 269.97814 * 8 7 5 10 10 N 1.34778 * 119.99973 * 89.98034 * 8 7 5 11 11 C 1.46502 * 119.99877 * 179.97438 * 10 8 7 12 12 H 1.09007 * 110.64174 * 325.70008 * 11 10 8 13 13 C 1.54329 * 110.72005 * 88.83829 * 11 10 8 14 14 N 1.47023 * 107.26454 * 96.16922 * 13 11 10 15 15 C 1.36940 * 125.64574 * 178.90194 * 14 13 11 16 16 H 1.07993 * 120.00263 * 180.02562 * 15 14 13 17 17 C 1.38816 * 119.99977 * 0.03001 * 15 14 13 18 18 N 1.31623 * 119.99686 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00291 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47393 * 89.99711 * 19 17 15 21 21 H 1.48496 * 109.47410 * 209.99960 * 19 17 15 22 22 H 1.48504 * 109.47259 * 330.00183 * 19 17 15 23 23 C 1.47421 * 108.70714 * 358.94539 * 14 13 11 24 24 C 1.55150 * 110.71926 * 202.55735 * 11 10 8 25 25 C 1.53001 * 111.00548 * 35.21432 * 24 11 10 26 26 C 1.53004 * 111.00253 * 159.06423 * 24 11 10 27 27 C 1.38472 * 119.93858 * 179.75877 * 2 1 3 28 28 C 1.50703 * 121.05591 * 359.97438 * 27 2 1 29 29 H 1.09001 * 109.46841 * 270.23926 * 1 2 3 30 30 H 1.08993 * 109.47504 * 30.24367 * 1 2 3 31 31 H 1.09001 * 109.46747 * 150.24554 * 1 2 3 32 32 H 0.96703 * 113.99911 * 270.01923 * 6 5 4 33 33 H 0.96990 * 120.00031 * 359.97438 * 10 8 7 34 34 H 1.08994 * 109.88076 * 215.58819 * 13 11 10 35 35 H 1.09000 * 109.88185 * 336.75465 * 13 11 10 36 36 H 0.97003 * 119.99563 * 179.97438 * 18 17 15 37 37 H 1.08996 * 110.36826 * 142.97000 * 23 14 13 38 38 H 1.09003 * 110.36324 * 265.17566 * 23 14 13 39 39 H 1.09002 * 109.47417 * 60.00074 * 25 24 11 40 40 H 1.08996 * 109.47045 * 180.02562 * 25 24 11 41 41 H 1.08997 * 109.46864 * 299.99887 * 25 24 11 42 42 H 1.09001 * 109.47130 * 60.00478 * 26 24 11 43 43 H 1.09000 * 109.47223 * 179.97438 * 26 24 11 44 44 H 1.08999 * 109.47194 * 299.99647 * 26 24 11 45 45 H 1.09002 * 109.47152 * 269.71698 * 28 27 2 46 46 H 1.09001 * 109.46980 * 149.71799 * 28 27 2 47 47 H 1.09004 * 109.47113 * 29.71779 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1650 1.1430 0.0000 4 7 3.4464 1.2033 -0.0057 5 6 4.2046 0.1170 -0.0066 6 8 5.5546 0.2270 -0.0132 7 6 3.5980 -1.1498 -0.0016 8 6 4.4080 -2.3863 -0.0018 9 8 4.7370 -2.8972 -1.0546 10 7 4.7818 -2.9472 1.1653 11 6 5.5842 -4.1730 1.1650 12 1 5.3103 -4.8114 0.3250 13 6 7.0906 -3.8395 1.1288 14 7 7.5785 -3.8736 2.5153 15 6 8.8704 -3.6530 2.9124 16 1 9.1291 -3.7012 3.9597 17 6 9.8475 -3.3675 1.9685 18 7 9.5322 -3.3093 0.6920 19 14 11.6095 -3.0660 2.5101 20 1 12.3504 -4.3529 2.5237 21 1 12.2646 -2.1277 1.5637 22 1 11.6146 -2.4776 3.8736 23 6 6.4469 -4.1855 3.4072 24 6 5.4245 -4.9338 2.5077 25 6 4.0017 -4.7927 3.0522 26 6 5.8060 -6.4073 2.3518 27 6 2.1981 -1.1999 0.0051 28 6 1.4673 -2.5179 0.0112 29 1 -0.3633 0.0043 1.0277 30 1 -0.3634 0.8877 -0.5176 31 1 -0.3633 -0.8922 -0.5100 32 1 5.9424 0.2571 -0.8986 33 1 4.5197 -2.5394 2.0053 34 1 7.6202 -4.5813 0.5311 35 1 7.2402 -2.8454 0.7075 36 1 10.2149 -3.1094 0.0325 37 1 6.7741 -4.8280 4.2246 38 1 6.0088 -3.2676 3.7993 39 1 3.2944 -5.2034 2.3316 40 1 3.9176 -5.3350 3.9939 41 1 3.7795 -3.7387 3.2192 42 1 6.8446 -6.4816 2.0295 43 1 5.6854 -6.9170 3.3077 44 1 5.1603 -6.8730 1.6074 45 1 1.2960 -2.8336 1.0403 46 1 2.0671 -3.2683 -0.5039 47 1 0.5104 -2.4052 -0.4984 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974892607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:01 Heat of formation + Delta-G solvation = -20.658310 kcal Electronic energy + Delta-G solvation = -30388.608186 eV Core-core repulsion = 26378.977302 eV Total energy + Delta-G solvation = -4009.630884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.66903 -41.16310 -39.50402 -38.90797 -36.03875 -35.73924 -34.61987 -33.65050 -32.61895 -30.13371 -29.52777 -28.96816 -28.05284 -27.43246 -25.97567 -24.72874 -23.78979 -22.39806 -21.60571 -20.35064 -20.12133 -19.24661 -18.71054 -18.64774 -17.58359 -17.05457 -16.71667 -16.13827 -15.81476 -15.73179 -15.50493 -15.39137 -15.01923 -14.77526 -14.48169 -14.13581 -14.02888 -13.93129 -13.81659 -13.55782 -13.45996 -13.29747 -13.16226 -12.96331 -12.87165 -12.75372 -12.70867 -12.60569 -12.28328 -12.14457 -11.91847 -11.81304 -11.58668 -11.54588 -11.33240 -11.03288 -10.76661 -10.56757 -10.54204 -10.15135 -8.89561 -7.84655 -5.20562 -0.71393 -0.44308 1.21479 1.42754 1.44739 1.53110 1.86774 2.02530 2.31567 2.47888 2.95391 3.24744 3.28609 3.34102 3.46361 3.58468 3.71393 3.80586 3.93363 4.05225 4.10955 4.31854 4.36509 4.49728 4.57054 4.65277 4.67913 4.69652 4.83507 4.84148 4.86970 4.94191 4.98652 5.02863 5.06201 5.11054 5.15834 5.24010 5.35154 5.37928 5.44659 5.56204 5.65140 5.73214 6.17228 6.20005 6.31115 6.94928 7.08569 7.42810 7.77310 8.40841 9.24422 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013679 B = 0.003961 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.373949 B = 7067.996679 C = 8377.803137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.063 3.937 3 N -0.230 5.230 4 N -0.284 5.284 5 C 0.277 3.723 6 O -0.484 6.484 7 C -0.161 4.161 8 C 0.580 3.420 9 O -0.563 6.563 10 N -0.681 5.681 11 C 0.136 3.864 12 H 0.089 0.911 13 C 0.192 3.808 14 N -0.620 5.620 15 C -0.239 4.239 16 H 0.084 0.916 17 C -0.066 4.066 18 N -0.950 5.950 19 Si 0.975 3.025 20 H -0.284 1.284 21 H -0.299 1.299 22 H -0.268 1.268 23 C 0.136 3.864 24 C -0.072 4.072 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.016 4.016 28 C -0.126 4.126 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.421 0.579 33 H 0.407 0.593 34 H 0.009 0.991 35 H 0.001 0.999 36 H 0.243 0.757 37 H 0.048 0.952 38 H 0.023 0.977 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.029 0.971 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.118 0.882 46 H 0.065 0.935 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.061 -1.001 1.638 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.083 4.083 3 N -0.074 5.074 4 N -0.135 5.135 5 C 0.090 3.910 6 O -0.292 6.292 7 C -0.176 4.176 8 C 0.364 3.636 9 O -0.442 6.442 10 N -0.330 5.330 11 C 0.031 3.969 12 H 0.107 0.893 13 C 0.066 3.934 14 N -0.346 5.346 15 C -0.368 4.368 16 H 0.102 0.898 17 C -0.259 4.259 18 N -0.599 5.599 19 Si 0.804 3.196 20 H -0.211 1.211 21 H -0.226 1.226 22 H -0.193 1.193 23 C 0.011 3.989 24 C -0.074 4.074 25 C -0.182 4.182 26 C -0.180 4.180 27 C -0.027 4.027 28 C -0.182 4.182 29 H 0.127 0.873 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.283 0.717 33 H 0.244 0.756 34 H 0.028 0.972 35 H 0.019 0.981 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.136 0.864 46 H 0.084 0.916 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -23.595 0.298 1.427 23.640 hybrid contribution 2.441 -0.616 -0.409 2.551 sum -21.154 -0.318 1.018 21.181 Atomic orbital electron populations 1.20985 0.82977 1.06012 1.05731 1.23476 1.01446 0.88089 0.95278 1.72752 0.99617 1.26179 1.08832 1.73007 1.00439 1.26829 1.13213 1.21035 0.86251 0.88753 0.94951 1.84739 1.13537 1.95220 1.35690 1.21362 0.96046 0.93978 1.06186 1.17792 0.78832 0.82759 0.84179 1.90822 1.57185 1.63907 1.32327 1.45807 1.52298 1.26963 1.07946 1.22243 0.90370 0.84962 0.99320 0.89305 1.21104 0.89272 0.97081 0.85953 1.44655 1.04509 1.82897 1.02553 1.19442 0.84319 1.40067 0.92967 0.89794 1.25624 1.02093 1.02651 0.95533 1.70214 1.32650 1.56481 1.00518 0.85128 0.80025 0.77247 0.77245 1.21135 1.22600 1.19332 1.21982 0.87708 0.96106 0.93100 1.22079 0.97083 0.95650 0.92575 1.21665 0.92319 1.02160 1.02046 1.21588 1.00543 0.93052 1.02855 1.21538 0.90135 0.99839 0.91217 1.21225 1.01562 0.89501 1.05932 0.87327 0.89296 0.86885 0.71696 0.75628 0.97239 0.98092 0.94758 0.93350 0.95918 0.90596 0.90256 0.92419 0.95221 0.90285 0.91028 0.86403 0.91610 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 9.81 71.24 0.70 -0.10 16 2 C 0.06 1.21 6.86 42.61 0.29 1.50 16 3 N -0.23 -6.20 11.40 -47.73 -0.54 -6.74 16 4 N -0.28 -9.17 11.52 -169.57 -1.95 -11.13 16 5 C 0.28 9.02 7.88 85.14 0.67 9.70 16 6 O -0.48 -17.06 13.09 -87.41 -1.14 -18.21 16 7 C -0.16 -4.65 5.69 -19.75 -0.11 -4.76 16 8 C 0.58 19.64 5.62 86.78 0.49 20.12 16 9 O -0.56 -23.36 16.79 -3.90 -0.07 -23.42 16 10 N -0.68 -21.87 4.51 -439.79 -1.98 -23.85 16 11 C 0.14 4.99 2.54 46.18 0.12 5.11 16 12 H 0.09 3.32 7.53 -2.38 -0.02 3.30 16 13 C 0.19 9.77 4.80 86.73 0.42 10.19 16 14 N -0.62 -31.47 3.38 -691.04 -2.34 -33.81 16 15 C -0.24 -13.49 10.28 84.03 0.86 -12.63 16 16 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 17 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 18 N -0.95 -59.40 10.31 21.65 0.22 -59.18 16 19 Si 0.97 47.19 29.55 68.60 2.03 49.21 16 20 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 23 C 0.14 5.15 6.16 87.02 0.54 5.68 16 24 C -0.07 -2.14 0.84 -50.62 -0.04 -2.18 16 25 C -0.12 -2.37 8.23 71.98 0.59 -1.78 16 26 C -0.12 -3.46 8.58 71.98 0.62 -2.84 16 27 C -0.02 -0.31 5.96 -19.36 -0.12 -0.43 16 28 C -0.13 -1.47 9.33 71.24 0.66 -0.80 16 29 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.28 6.04 -2.39 -0.01 0.26 16 32 H 0.42 11.88 9.06 -74.06 -0.67 11.21 16 33 H 0.41 11.56 7.00 -92.72 -0.65 10.91 16 34 H 0.01 0.56 7.38 -2.39 -0.02 0.54 16 35 H 0.00 0.05 7.41 -2.39 -0.02 0.04 16 36 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 37 H 0.05 1.77 8.06 -2.39 -0.02 1.75 16 38 H 0.02 0.84 8.00 -2.39 -0.02 0.82 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.03 6.44 -2.39 -0.02 1.01 16 42 H 0.03 1.07 7.91 -2.39 -0.02 1.05 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.06 1.08 7.25 -2.39 -0.02 1.06 16 47 H 0.12 0.58 6.06 -2.38 -0.01 0.57 16 Total: -1.00 -83.02 381.20 0.07 -82.94 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -0.30 Total: 20.80 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 6.15 Total: 23.39 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -6.60 Total: -134.71 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -1.21 Total: -41.63 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.21 kcal Total: -83.02 0.07 -82.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974892607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.286 kcal (2) G-P(sol) polarization free energy of solvation -83.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds