Wall clock time and date at job start Tue Mar 31 2020 19:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30525 * 119.71079 * 2 1 4 4 N 1.28260 * 122.99093 * 179.97438 * 3 2 1 5 5 C 1.46504 * 119.03359 * 180.02562 * 4 3 2 6 6 C 1.34685 * 121.93555 * 359.73347 * 4 3 2 7 7 O 1.21900 * 120.46925 * 180.29276 * 6 4 3 8 8 C 1.42328 * 119.06379 * 0.51850 * 6 4 3 9 9 C 1.47411 * 121.29825 * 179.77077 * 8 6 4 10 10 O 1.21600 * 119.99946 * 84.05675 * 9 8 6 11 11 N 1.34778 * 119.99939 * 264.05682 * 9 8 6 12 12 C 1.48221 * 119.97271 * 355.24098 * 11 9 8 13 13 C 1.47140 * 110.34218 * 102.50498 * 12 11 9 14 14 C 1.53239 * 111.81436 * 58.23015 * 13 12 11 15 15 N 1.43466 * 108.26221 * 281.67871 * 14 13 12 16 16 C 1.36936 * 118.93753 * 273.77432 * 15 14 13 17 17 H 1.08002 * 119.99815 * 22.49775 * 16 15 14 18 18 C 1.38807 * 120.00045 * 202.49594 * 16 15 14 19 19 N 1.31625 * 120.00240 * 34.61014 * 18 16 15 20 20 Si 1.86802 * 120.00044 * 214.61536 * 18 16 15 21 21 H 1.48504 * 109.47301 * 180.02562 * 20 18 16 22 22 H 1.48500 * 109.47235 * 59.99908 * 20 18 16 23 23 H 1.48499 * 109.46892 * 299.99765 * 20 18 16 24 24 C 1.48857 * 122.12393 * 93.50023 * 15 14 13 25 25 C 1.43620 * 119.97254 * 175.26331 * 11 9 8 26 26 C 1.39320 * 117.39843 * 359.50151 * 8 6 4 27 27 C 1.50699 * 120.98770 * 180.22157 * 26 8 6 28 28 H 1.08994 * 109.47382 * 270.02527 * 1 2 3 29 29 H 1.09007 * 109.46396 * 30.02399 * 1 2 3 30 30 H 1.08999 * 109.47363 * 150.01932 * 1 2 3 31 31 H 1.09001 * 109.46753 * 0.02562 * 5 4 3 32 32 H 1.08993 * 109.46891 * 120.00281 * 5 4 3 33 33 H 1.08999 * 109.47043 * 240.00564 * 5 4 3 34 34 H 1.08993 * 109.32618 * 222.77247 * 12 11 9 35 35 H 1.09005 * 109.32224 * 342.42212 * 12 11 9 36 36 H 1.08997 * 109.00346 * 178.90280 * 13 12 11 37 37 H 1.08997 * 109.00812 * 297.76811 * 13 12 11 38 38 H 1.08997 * 109.49722 * 162.03846 * 14 13 12 39 39 H 1.09009 * 109.73548 * 41.45182 * 14 13 12 40 40 H 0.97000 * 119.99288 * 5.31878 * 19 18 16 41 41 H 1.09009 * 109.47859 * 80.87619 * 24 15 14 42 42 H 1.08998 * 109.48323 * 200.90970 * 24 15 14 43 43 H 1.08997 * 108.87489 * 149.86791 * 25 11 9 44 44 H 1.09001 * 108.87182 * 31.42598 * 25 11 9 45 45 H 1.09003 * 109.46910 * 93.41739 * 27 26 8 46 46 H 1.08995 * 109.47314 * 213.41241 * 27 26 8 47 47 H 1.08996 * 109.47255 * 333.41642 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1539 1.1337 0.0000 4 7 3.4344 1.2070 0.0005 5 6 4.0710 2.5266 0.0010 6 6 4.2111 0.1067 0.0063 7 8 5.4259 0.2076 0.0120 8 6 3.5934 -1.1756 0.0009 9 6 4.3959 -2.4121 0.0019 10 8 4.8137 -2.8649 1.0503 11 7 4.6666 -3.0407 -1.1592 12 6 4.0703 -2.5490 -2.4239 13 6 5.0663 -1.7921 -3.1986 14 6 6.3020 -2.6396 -3.5196 15 7 7.1258 -2.6957 -2.3463 16 6 8.0340 -1.6949 -2.1259 17 1 7.8951 -0.7284 -2.5874 18 6 9.1332 -1.9226 -1.3094 19 7 9.7059 -3.1076 -1.2920 20 14 9.7996 -0.5473 -0.2351 21 1 10.9684 -1.0429 0.5352 22 1 8.7418 -0.0965 0.7046 23 1 10.2187 0.5910 -1.0917 24 6 7.0209 -3.8037 -1.3577 25 6 5.5320 -4.1868 -1.1698 26 6 2.2008 -1.2164 0.0005 27 6 1.4632 -2.5305 -0.0001 28 1 -0.3634 0.0005 1.0276 29 1 -0.3632 0.8899 -0.5143 30 1 -0.3634 -0.8901 -0.5135 31 1 3.3032 3.3003 0.0014 32 1 4.6913 2.6303 0.8912 33 1 4.6919 2.6308 -0.8888 34 1 3.7240 -3.3979 -3.0134 35 1 3.2252 -1.8995 -2.1957 36 1 4.6115 -1.4581 -4.1311 37 1 5.3761 -0.9201 -2.6227 38 1 6.8564 -2.1794 -4.3374 39 1 5.9945 -3.6465 -3.8024 40 1 9.4097 -3.7984 -1.9050 41 1 7.5757 -4.6688 -1.7211 42 1 7.4362 -3.4799 -0.4034 43 1 5.2325 -4.8474 -1.9834 44 1 5.4217 -4.7207 -0.2259 45 1 1.2316 -2.8176 1.0256 46 1 0.5375 -2.4273 -0.5663 47 1 2.0868 -3.2971 -0.4600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981728183.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:04 Heat of formation + Delta-G solvation = 35.945459 kcal Electronic energy + Delta-G solvation = -31692.039399 eV Core-core repulsion = 27684.863039 eV Total energy + Delta-G solvation = -4007.176360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.10419 -39.75466 -37.88022 -37.13618 -35.91661 -34.46499 -32.58398 -32.39185 -30.89863 -30.57460 -28.30135 -27.73375 -26.36093 -25.31831 -24.77321 -23.27278 -22.30440 -21.97902 -19.84421 -19.26998 -18.26263 -17.50442 -17.09962 -16.84393 -16.33619 -16.01357 -15.62603 -14.85226 -14.36870 -14.23660 -14.15235 -13.95753 -13.50217 -13.47508 -13.42726 -13.26955 -13.17569 -13.01811 -12.77438 -12.65790 -12.58530 -12.30419 -12.14854 -12.04754 -11.92264 -11.27706 -11.14229 -10.94732 -10.53510 -10.50346 -10.23719 -10.13579 -10.01961 -9.81957 -9.81496 -9.42671 -9.30993 -8.32097 -8.17631 -8.04274 -6.77982 -5.97482 -2.97591 0.28790 1.59715 2.11594 2.88164 3.22728 3.48427 3.63670 3.77822 3.93482 4.00101 4.29047 4.36504 4.56405 4.79237 4.95920 5.00842 5.09493 5.15176 5.19029 5.21283 5.30861 5.32968 5.40405 5.48212 5.51384 5.57016 5.60034 5.66763 5.69410 5.74441 5.77402 5.86396 6.03848 6.07380 6.11057 6.24748 6.32175 6.34240 6.74457 6.76695 6.92970 7.20807 7.22001 7.70864 7.76093 8.14256 8.21665 8.51131 8.72570 9.28752 10.01844 10.39790 11.33126 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.005439 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.863903 B = 5146.961414 C = 6154.418047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.053 3.947 3 N -0.216 5.216 4 N -0.347 5.347 5 C 0.086 3.914 6 C 0.487 3.513 7 O -0.478 6.478 8 C -0.183 4.183 9 C 0.591 3.409 10 O -0.527 6.527 11 N -0.573 5.573 12 C 0.125 3.875 13 C -0.175 4.175 14 C 0.168 3.832 15 N -0.589 5.589 16 C -0.351 4.351 17 H 0.051 0.949 18 C -0.010 4.010 19 N -0.905 5.905 20 Si 1.041 2.959 21 H -0.289 1.289 22 H -0.288 1.288 23 H -0.296 1.296 24 C 0.141 3.859 25 C 0.097 3.903 26 C -0.015 4.015 27 C -0.126 4.126 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.031 0.969 40 H 0.266 0.734 41 H 0.032 0.968 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.379 4.446 -1.106 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 N -0.041 5.041 4 N -0.169 5.169 5 C -0.054 4.054 6 C 0.282 3.718 7 O -0.350 6.350 8 C -0.199 4.199 9 C 0.376 3.624 10 O -0.403 6.403 11 N -0.304 5.304 12 C 0.003 3.997 13 C -0.217 4.217 14 C 0.039 3.961 15 N -0.311 5.311 16 C -0.479 4.479 17 H 0.069 0.931 18 C -0.213 4.213 19 N -0.544 5.544 20 Si 0.871 3.129 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.223 1.223 24 C 0.015 3.985 25 C -0.027 4.027 26 C -0.021 4.021 27 C -0.183 4.183 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.110 0.890 46 H 0.106 0.894 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.264 5.556 0.599 21.986 hybrid contribution -0.792 -0.762 -1.218 1.640 sum -22.057 4.794 -0.618 22.580 Atomic orbital electron populations 1.20551 0.86222 1.03968 1.03551 1.21478 0.97717 0.86692 1.05902 1.70513 0.95521 1.28882 1.09182 1.46658 1.01773 1.09908 1.58548 1.22134 0.98502 0.79975 1.04829 1.17684 0.88397 0.84431 0.81253 1.91175 1.11301 1.85196 1.47352 1.21533 0.93821 0.95080 1.09432 1.17183 0.79143 0.82000 0.84047 1.90790 1.52510 1.65629 1.31351 1.47227 1.46533 1.30413 1.06249 1.20737 0.95589 0.98449 0.84925 1.21847 0.99057 1.01850 0.98922 1.20075 0.90365 0.95662 0.89950 1.43666 1.41526 1.26375 1.19579 1.19696 1.03592 0.91308 1.33348 0.93127 1.25490 0.93344 1.01519 1.00953 1.70842 1.37264 1.06239 1.40050 0.83907 0.75879 0.75497 0.77574 1.21468 1.21483 1.22300 1.22014 0.90893 0.90866 0.94691 1.21818 0.92719 0.86517 1.01695 1.21346 0.92133 0.97181 0.91453 1.21031 1.00590 0.92553 1.04082 0.90152 0.90201 0.89846 0.88343 0.89584 0.89417 0.91248 0.91814 0.92660 0.91160 0.93556 0.95087 0.92393 0.94984 0.91005 0.91890 0.90523 0.89047 0.89429 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 9.81 36.01 0.35 -0.15 16 2 C 0.05 0.57 6.87 -82.47 -0.57 0.00 16 3 N -0.22 -2.72 10.71 33.66 0.36 -2.36 16 4 N -0.35 -5.23 3.62 -69.82 -0.25 -5.48 16 5 C 0.09 1.01 10.21 59.85 0.61 1.62 16 6 C 0.49 9.51 7.51 -14.73 -0.11 9.40 16 7 O -0.48 -11.77 16.63 5.01 0.08 -11.69 16 8 C -0.18 -3.27 4.12 -104.19 -0.43 -3.70 16 9 C 0.59 12.31 5.42 -12.53 -0.07 12.24 16 10 O -0.53 -12.93 16.62 5.28 0.09 -12.84 16 11 N -0.57 -10.88 2.37 -177.93 -0.42 -11.31 16 12 C 0.13 1.95 5.49 -5.91 -0.03 1.92 16 13 C -0.18 -3.20 5.63 -29.42 -0.17 -3.36 16 14 C 0.17 3.53 5.59 -5.52 -0.03 3.50 16 15 N -0.59 -15.16 2.44 -172.34 -0.42 -15.58 16 16 C -0.35 -10.42 9.06 -15.06 -0.14 -10.55 16 17 H 0.05 1.56 8.02 -52.49 -0.42 1.14 16 18 C -0.01 -0.31 4.37 -17.43 -0.08 -0.39 16 19 N -0.90 -28.51 12.64 55.49 0.70 -27.81 16 20 Si 1.04 28.52 30.03 -169.99 -5.11 23.41 16 21 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 22 H -0.29 -8.17 7.11 56.52 0.40 -7.77 16 23 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 24 C 0.14 3.49 5.16 -1.75 -0.01 3.48 16 25 C 0.10 1.91 5.29 -4.58 -0.02 1.88 16 26 C -0.01 -0.19 5.11 -103.55 -0.53 -0.72 16 27 C -0.13 -1.14 9.30 36.00 0.33 -0.80 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.08 0.33 6.10 -51.93 -0.32 0.01 16 31 H 0.10 0.81 8.05 -51.93 -0.42 0.40 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 35 H 0.06 0.89 5.89 -51.93 -0.31 0.58 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.58 7.90 -51.93 -0.41 1.17 16 38 H 0.05 1.01 8.02 -51.93 -0.42 0.59 16 39 H 0.03 0.58 7.58 -51.92 -0.39 0.19 16 40 H 0.27 8.30 6.98 -40.82 -0.28 8.02 16 41 H 0.03 0.80 7.39 -51.92 -0.38 0.41 16 42 H 0.07 2.11 6.90 -51.93 -0.36 1.75 16 43 H 0.06 1.03 7.73 -51.93 -0.40 0.63 16 44 H 0.08 1.50 7.30 -51.93 -0.38 1.12 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.09 0.48 6.22 -51.93 -0.32 0.16 16 47 H 0.08 0.82 7.00 -51.93 -0.36 0.45 16 LS Contribution 373.30 15.07 5.63 5.63 Total: -1.00 -39.96 373.30 -7.15 -47.10 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -6.93 Total: -3.46 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: -0.88 Total: 14.38 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -0.03 Total: -62.53 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.17 Total: -24.53 kcal Atomic # 14 Polarization: 28.52 SS G_CDS: -5.11 Total: 23.41 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.96 -7.15 -47.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981728183.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.050 kcal (2) G-P(sol) polarization free energy of solvation -39.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds