Wall clock time and date at job start Tue Mar 31 2020 19:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29950 * 125.30853 * 2 1 4 4 O 1.41874 * 107.41478 * 179.89276 * 3 2 1 5 5 N 1.41871 * 106.38975 * 0.36187 * 4 3 2 6 6 C 1.29951 * 107.41212 * 359.78704 * 5 4 3 7 7 C 1.50699 * 125.30361 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47236 * 269.99964 * 7 6 5 9 9 O 1.21275 * 120.00396 * 359.97438 * 8 7 6 10 10 N 1.34786 * 119.99661 * 180.02562 * 8 7 6 11 11 C 1.47199 * 126.70544 * 359.67998 * 10 8 7 12 12 C 1.54037 * 106.26230 * 148.63488 * 11 10 8 13 13 C 1.53004 * 112.76705 * 141.67694 * 12 11 10 14 14 C 1.56813 * 109.45481 * 268.28577 * 12 11 10 15 15 N 1.48113 * 105.09921 * 88.54372 * 14 12 11 16 16 C 1.36936 * 127.84111 * 219.46184 * 15 14 12 17 17 H 1.08006 * 119.99781 * 160.97491 * 16 15 14 18 18 C 1.38808 * 120.00395 * 340.97964 * 16 15 14 19 19 N 1.31625 * 120.00624 * 163.48326 * 18 16 15 20 20 Si 1.86807 * 119.99812 * 343.48192 * 18 16 15 21 21 H 1.48496 * 109.47178 * 88.20277 * 20 18 16 22 22 H 1.48506 * 109.46801 * 208.20597 * 20 18 16 23 23 H 1.48499 * 109.46778 * 328.20129 * 20 18 16 24 24 C 1.48106 * 104.31145 * 39.46467 * 15 14 12 25 25 C 1.54314 * 104.71572 * 320.22345 * 24 15 14 26 26 C 1.52997 * 112.07694 * 146.94500 * 25 24 15 27 27 C 1.47203 * 126.69672 * 179.97438 * 10 8 7 28 28 H 1.09000 * 109.47308 * 269.69751 * 1 2 3 29 29 H 1.09004 * 109.46937 * 29.69389 * 1 2 3 30 30 H 1.08992 * 109.47571 * 149.69438 * 1 2 3 31 31 H 1.09006 * 109.47493 * 30.00263 * 7 6 5 32 32 H 1.09005 * 109.47254 * 149.99610 * 7 6 5 33 33 H 1.08991 * 110.06988 * 267.95062 * 11 10 8 34 34 H 1.08999 * 110.06806 * 29.48086 * 11 10 8 35 35 H 1.08999 * 109.47031 * 301.38412 * 13 12 11 36 36 H 1.09003 * 109.47261 * 61.38324 * 13 12 11 37 37 H 1.09002 * 109.47344 * 181.38251 * 13 12 11 38 38 H 1.08999 * 110.47089 * 329.46962 * 14 12 11 39 39 H 1.08996 * 110.02942 * 207.38729 * 14 12 11 40 40 H 0.96991 * 120.00208 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.38919 * 201.41357 * 24 15 14 42 42 H 1.08997 * 110.38836 * 79.03170 * 24 15 14 43 43 H 1.09003 * 109.47288 * 182.00657 * 26 25 24 44 44 H 1.08996 * 109.47159 * 302.01464 * 26 25 24 45 45 H 1.09000 * 109.47339 * 62.01423 * 26 25 24 46 46 H 1.08995 * 110.07239 * 330.52736 * 27 10 8 47 47 H 1.08997 * 110.06755 * 92.05914 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6246 0.0025 5 7 3.5709 -0.7937 -0.0046 6 6 2.3212 -1.1499 -0.0061 7 6 1.8208 -2.5713 -0.0136 8 6 1.6534 -3.0374 -1.4369 9 8 1.9143 -2.2889 -2.3548 10 7 1.2128 -4.2859 -1.6898 11 6 0.8600 -5.3125 -0.6957 12 6 -0.2588 -6.1605 -1.3297 13 6 -0.1303 -7.6498 -1.0033 14 6 -1.6542 -5.5660 -0.9315 15 7 -1.9563 -4.5587 -1.9745 16 6 -2.5382 -3.3298 -1.8121 17 1 -2.4289 -2.5753 -2.5772 18 6 -3.2683 -3.0537 -0.6643 19 7 -3.5499 -1.8077 -0.3471 20 14 -3.8512 -4.4507 0.4304 21 1 -2.7994 -4.7688 1.4292 22 1 -5.0943 -4.0432 1.1332 23 1 -4.1233 -5.6506 -0.4011 24 6 -1.4862 -5.1824 -3.2329 25 6 -0.1657 -5.8847 -2.8529 26 6 0.0571 -7.1656 -3.6595 27 6 0.9961 -4.8909 -3.0141 28 1 -0.3634 -0.0054 1.0276 29 1 -0.3633 0.8928 -0.5091 30 1 -0.3634 -0.8871 -0.5185 31 1 2.5398 -3.2124 0.4965 32 1 0.8608 -2.6213 0.5004 33 1 1.7271 -5.9358 -0.4778 34 1 0.4991 -4.8401 0.2180 35 1 0.8336 -8.0170 -1.3556 36 1 -0.2016 -7.7929 0.0749 37 1 -0.9313 -8.2004 -1.4967 38 1 -1.6013 -5.0931 0.0491 39 1 -2.4091 -6.3522 -0.9330 40 1 -4.0598 -1.6149 0.4551 41 1 -1.3063 -4.4198 -3.9907 42 1 -2.2141 -5.9104 -3.5910 43 1 0.9804 -7.6444 -3.3332 44 1 -0.7803 -7.8451 -3.5010 45 1 0.1301 -6.9199 -4.7189 46 1 0.7316 -4.1206 -3.7385 47 1 1.8950 -5.4159 -3.3370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982695229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:35 Heat of formation + Delta-G solvation = 72.612253 kcal Electronic energy + Delta-G solvation = -31218.027393 eV Core-core repulsion = 27212.441024 eV Total energy + Delta-G solvation = -4005.586368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.71311 -41.80637 -39.89204 -36.49704 -35.70997 -34.73007 -34.50632 -33.07072 -33.03441 -30.85130 -29.70979 -28.28906 -27.29642 -26.95882 -26.83718 -23.92994 -23.39795 -22.13411 -21.86245 -20.54307 -19.44464 -18.73180 -18.22880 -17.97208 -17.19892 -17.10014 -16.94396 -16.40173 -15.97316 -15.45808 -15.33630 -15.21417 -15.16493 -14.58589 -14.48764 -14.34429 -14.30347 -14.27496 -13.97370 -13.73945 -13.53300 -13.27252 -12.97651 -12.93193 -12.83493 -12.75831 -12.69900 -12.47375 -12.39646 -12.18888 -12.14364 -11.88906 -11.71215 -11.63593 -11.49096 -11.22460 -11.04113 -10.95954 -10.74719 -9.68054 -8.94073 -8.02624 -5.32191 -0.66200 0.76030 1.33084 1.43438 1.48769 1.50418 1.54382 1.92132 2.09130 2.48337 2.74867 3.16576 3.30129 3.36979 3.43846 3.53631 3.72815 3.75488 3.80653 4.06126 4.16309 4.25540 4.29896 4.35491 4.38227 4.52847 4.54798 4.60976 4.65650 4.71084 4.77524 4.84083 4.87436 4.89849 5.00230 5.03996 5.09481 5.10563 5.20298 5.30464 5.37725 5.39003 5.46650 5.63331 5.74677 5.78469 6.21228 6.50702 6.80949 7.03627 7.61353 8.26471 9.15993 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.005528 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.040199 B = 5063.965839 C = 6640.068715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.099 3.901 3 N -0.300 5.300 4 O -0.003 6.003 5 N -0.280 5.280 6 C 0.109 3.891 7 C -0.071 4.071 8 C 0.540 3.460 9 O -0.590 6.590 10 N -0.598 5.598 11 C 0.108 3.892 12 C -0.077 4.077 13 C -0.121 4.121 14 C 0.110 3.890 15 N -0.620 5.620 16 C -0.214 4.214 17 H 0.044 0.956 18 C -0.028 4.028 19 N -0.950 5.950 20 Si 0.939 3.061 21 H -0.263 1.263 22 H -0.322 1.322 23 H -0.266 1.266 24 C 0.135 3.865 25 C -0.074 4.074 26 C -0.120 4.120 27 C 0.125 3.875 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.160 0.840 32 H 0.146 0.854 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.034 0.966 40 H 0.260 0.740 41 H 0.032 0.968 42 H 0.037 0.963 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.043 0.957 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.377 -14.944 2.672 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 N -0.048 5.048 4 O -0.139 6.139 5 N -0.025 5.025 6 C -0.075 4.075 7 C -0.112 4.112 8 C 0.328 3.672 9 O -0.471 6.471 10 N -0.329 5.329 11 C -0.014 4.014 12 C -0.079 4.079 13 C -0.179 4.179 14 C -0.015 4.015 15 N -0.344 5.344 16 C -0.342 4.342 17 H 0.062 0.938 18 C -0.223 4.223 19 N -0.597 5.597 20 Si 0.769 3.231 21 H -0.189 1.189 22 H -0.252 1.252 23 H -0.191 1.191 24 C 0.010 3.990 25 C -0.076 4.076 26 C -0.178 4.178 27 C 0.003 3.997 28 H 0.136 0.864 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.177 0.823 32 H 0.164 0.836 33 H 0.128 0.872 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.635 -13.378 2.313 17.246 hybrid contribution -1.631 0.169 0.183 1.650 sum 9.004 -13.208 2.496 16.179 Atomic orbital electron populations 1.20551 0.82015 1.05492 1.05873 1.24977 1.01188 0.88643 0.93508 1.79894 0.88739 1.20094 1.16078 1.93310 1.21133 1.13981 1.85503 1.79779 1.18039 0.91079 1.13593 1.24122 0.89469 0.98835 0.95028 1.20463 1.06841 0.87886 0.95974 1.19878 0.76554 0.80269 0.90466 1.90719 1.53625 1.54545 1.48186 1.48170 1.63400 1.11695 1.09623 1.22488 0.98198 0.89152 0.91539 1.22821 0.93929 0.97112 0.94033 1.21666 1.03584 0.90180 1.02459 1.22768 0.94945 0.91114 0.92638 1.45130 1.70526 1.15290 1.03501 1.18317 1.24699 0.87004 1.04216 0.93771 1.25467 0.99576 0.97827 0.99385 1.69892 1.44083 1.18637 1.27044 0.86073 0.77087 0.80635 0.79281 1.18856 1.25155 1.19119 1.21936 0.93872 0.94597 0.88609 1.22281 0.93715 0.95810 0.95815 1.21672 1.03325 0.93863 0.98894 1.22055 0.98146 0.94864 0.84647 0.86370 0.89450 0.89648 0.82259 0.83607 0.87159 0.90145 0.89360 0.91271 0.91592 0.93033 0.94850 0.93101 0.94968 0.94500 0.89645 0.91078 0.92244 0.93820 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.64 10.05 71.23 0.72 -1.92 16 2 C 0.10 3.36 7.19 43.49 0.31 3.68 16 3 N -0.30 -11.00 12.98 -47.16 -0.61 -11.61 16 4 O 0.00 -0.12 13.71 70.18 0.96 0.85 16 5 N -0.28 -9.70 12.98 -47.16 -0.61 -10.31 16 6 C 0.11 3.50 5.68 43.49 0.25 3.75 16 7 C -0.07 -1.84 4.84 29.10 0.14 -1.70 16 8 C 0.54 17.88 7.87 87.66 0.69 18.57 16 9 O -0.59 -25.27 16.26 -3.02 -0.05 -25.32 16 10 N -0.60 -16.85 3.32 -814.80 -2.70 -19.55 16 11 C 0.11 2.24 5.95 86.60 0.51 2.76 16 12 C -0.08 -1.72 1.15 -49.78 -0.06 -1.78 16 13 C -0.12 -1.69 7.65 71.98 0.55 -1.14 16 14 C 0.11 3.70 3.83 87.40 0.33 4.03 16 15 N -0.62 -25.88 3.20 -683.60 -2.19 -28.07 16 16 C -0.21 -11.17 10.78 84.03 0.91 -10.27 16 17 H 0.04 2.68 8.06 -2.91 -0.02 2.65 16 18 C -0.03 -1.47 5.49 84.86 0.47 -1.01 16 19 N -0.95 -53.60 13.97 21.65 0.30 -53.30 16 20 Si 0.94 41.57 24.50 68.60 1.68 43.25 16 21 H -0.26 -10.36 6.51 99.48 0.65 -9.71 16 22 H -0.32 -15.14 7.11 99.48 0.71 -14.43 16 23 H -0.27 -11.42 6.11 99.48 0.61 -10.81 16 24 C 0.14 4.65 6.23 86.52 0.54 5.19 16 25 C -0.07 -1.79 1.06 -50.78 -0.05 -1.84 16 26 C -0.12 -1.89 7.50 71.98 0.54 -1.35 16 27 C 0.13 3.41 6.08 86.49 0.53 3.94 16 28 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 29 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.08 3.25 7.77 -2.39 -0.02 3.23 16 31 H 0.16 2.77 8.14 -2.38 -0.02 2.75 16 32 H 0.15 3.41 7.50 -2.38 -0.02 3.40 16 33 H 0.11 1.43 7.93 -2.39 -0.02 1.41 16 34 H 0.08 1.66 6.64 -2.39 -0.02 1.65 16 35 H 0.09 0.79 7.09 -2.39 -0.02 0.78 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.93 7.17 -2.39 -0.02 0.92 16 38 H 0.05 1.85 4.50 -2.39 -0.01 1.84 16 39 H 0.03 1.15 6.55 -2.39 -0.02 1.13 16 40 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 41 H 0.03 1.23 7.42 -2.39 -0.02 1.21 16 42 H 0.04 1.22 7.97 -2.39 -0.02 1.20 16 43 H 0.08 0.93 7.10 -2.39 -0.02 0.92 16 44 H 0.07 1.05 7.16 -2.39 -0.02 1.04 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.04 1.51 7.14 -2.39 -0.02 1.49 16 47 H 0.09 1.91 7.88 -2.39 -0.02 1.89 16 Total: -1.00 -73.45 368.89 3.99 -69.47 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.83 Total: 13.69 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 6.37 Total: 20.91 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -5.81 Total: -122.84 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: 0.91 Total: -24.48 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.68 Total: 43.25 kcal Total: -73.45 3.99 -69.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982695229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.079 kcal (2) G-P(sol) polarization free energy of solvation -73.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds