Wall clock time and date at job start Tue Mar 31 2020 18:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41288 * 126.14421 * 2 1 4 4 C 1.47721 * 125.95244 * 359.97438 * 3 2 1 5 5 O 1.21569 * 120.00043 * 359.97438 * 4 3 2 6 6 N 1.34781 * 119.99619 * 180.02562 * 4 3 2 7 7 C 1.47420 * 125.65007 * 359.68615 * 6 4 3 8 8 C 1.55134 * 104.72189 * 155.82073 * 7 6 4 9 9 C 1.55161 * 101.48578 * 37.29630 * 8 7 6 10 10 H 1.09005 * 110.72210 * 82.69224 * 9 8 7 11 11 N 1.46493 * 110.87288 * 205.89941 * 9 8 7 12 12 C 1.36939 * 119.99867 * 268.60905 * 11 9 8 13 13 H 1.07999 * 120.00001 * 0.02562 * 12 11 9 14 14 C 1.38816 * 120.00017 * 179.97438 * 12 11 9 15 15 N 1.31619 * 119.99979 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00168 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46750 * 90.00103 * 16 14 12 18 18 H 1.48498 * 109.47292 * 210.00203 * 16 14 12 19 19 H 1.48501 * 109.46858 * 330.00302 * 16 14 12 20 20 C 1.47026 * 125.64523 * 179.97438 * 6 4 3 21 21 H 1.09000 * 109.88297 * 61.59902 * 20 6 4 22 22 C 1.52995 * 109.88197 * 300.59233 * 20 6 4 23 23 N 1.32123 * 108.09723 * 179.97438 * 3 2 1 24 24 N 1.39408 * 108.10403 * 359.96606 * 23 3 2 25 25 C 1.34855 * 126.14779 * 179.68801 * 2 1 3 26 26 O 1.36040 * 128.62763 * 0.91280 * 25 2 1 27 27 C 1.43531 * 115.02611 * 163.86066 * 26 25 2 28 28 C 1.53224 * 109.27921 * 46.98015 * 27 26 25 29 29 C 1.46717 * 128.20912 * 180.18125 * 24 23 3 30 30 H 1.09001 * 109.46953 * 90.02463 * 1 2 3 31 31 H 1.09000 * 109.47318 * 210.02061 * 1 2 3 32 32 H 1.09000 * 109.47161 * 330.02691 * 1 2 3 33 33 H 1.08999 * 110.36812 * 274.74510 * 7 6 4 34 34 H 1.08996 * 110.36905 * 37.07603 * 7 6 4 35 35 H 1.08993 * 111.19394 * 279.19431 * 8 7 6 36 36 H 1.08999 * 110.94185 * 155.28706 * 8 7 6 37 37 H 0.97000 * 120.00224 * 88.60993 * 11 9 8 38 38 H 0.96997 * 120.00047 * 179.97438 * 15 14 12 39 39 H 1.08995 * 109.47449 * 61.45173 * 22 20 6 40 40 H 1.08996 * 109.47156 * 181.45528 * 22 20 6 41 41 H 1.09009 * 109.46888 * 301.45327 * 22 20 6 42 42 H 1.08999 * 109.50342 * 287.03389 * 27 26 25 43 43 H 1.08996 * 109.49835 * 166.91691 * 27 26 25 44 44 H 1.08995 * 109.49819 * 175.45326 * 28 27 26 45 45 H 1.09001 * 109.52928 * 55.36642 * 28 27 26 46 46 H 1.09008 * 109.76437 * 282.58402 * 29 24 23 47 47 H 1.09005 * 109.76883 * 43.35465 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3404 1.1410 0.0000 4 6 1.8863 2.5466 -0.0005 5 8 0.6976 2.8014 -0.0015 6 7 2.7899 3.5467 -0.0010 7 6 4.2548 3.3811 0.0055 8 6 4.8027 4.6944 -0.6122 9 6 3.8204 5.7439 -0.0282 10 1 4.1196 6.0335 0.9792 11 7 3.7335 6.9187 -0.8989 12 6 4.5672 7.9857 -0.6945 13 1 5.2891 7.9608 0.1084 14 6 4.4852 9.0987 -1.5200 15 7 3.6058 9.1288 -2.4988 16 14 5.6220 10.5545 -1.2407 17 1 6.8662 10.3695 -2.0300 18 1 4.9430 11.8027 -1.6722 19 1 5.9604 10.6485 0.2022 20 6 2.4778 4.9834 -0.0021 21 1 1.9225 5.2428 0.8992 22 6 1.6522 5.3356 -1.2411 23 7 3.5966 0.7316 0.0006 24 7 3.5980 -0.6624 0.0017 25 6 2.3025 -1.0889 0.0059 26 8 1.9454 -2.4016 -0.0039 27 6 2.9960 -3.3141 -0.3555 28 6 4.2600 -2.9590 0.4345 29 6 4.7518 -1.5688 0.0063 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3634 -0.8898 0.5141 32 1 -0.3633 0.8902 0.5134 33 1 4.6182 3.2586 1.0258 34 1 4.5426 2.5259 -0.6059 35 1 4.7477 4.6709 -1.7005 36 1 5.8226 4.8859 -0.2787 37 1 3.0854 6.9409 -1.6203 38 1 3.5482 9.9067 -3.0754 39 1 0.7117 4.7852 -1.2195 40 1 1.4467 6.4060 -1.2485 41 1 2.2101 5.0665 -2.1380 42 1 3.2011 -3.2388 -1.4234 43 1 2.6899 -4.3319 -0.1140 44 1 5.0354 -3.6976 0.2314 45 1 4.0335 -2.9530 1.5007 46 1 5.1830 -1.6216 -0.9934 47 1 5.5001 -1.2094 0.7128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986347939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:43 Heat of formation + Delta-G solvation = 15.900161 kcal Electronic energy + Delta-G solvation = -29503.274330 eV Core-core repulsion = 25495.228741 eV Total energy + Delta-G solvation = -4008.045589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.97510 -41.23289 -39.57606 -38.70836 -35.96091 -35.86686 -33.61179 -32.53544 -32.21752 -31.90327 -30.47428 -27.77652 -27.24395 -26.76834 -25.65611 -25.00628 -23.62790 -22.58722 -20.99224 -20.70667 -20.03374 -19.44769 -18.88586 -17.81906 -17.27233 -17.08488 -16.87842 -16.57798 -16.31165 -16.04577 -15.77019 -15.68921 -15.39469 -15.01500 -14.72829 -14.49927 -14.17947 -13.92326 -13.81284 -13.64224 -13.42854 -13.23133 -13.18705 -12.93615 -12.89744 -12.82917 -12.65016 -12.47791 -12.25693 -12.07655 -12.06050 -12.03983 -11.80107 -11.58893 -11.45442 -11.02510 -10.88902 -10.23820 -9.71967 -9.29190 -8.99913 -7.91508 -5.20712 0.18881 0.98716 1.07088 1.50714 1.52205 1.60529 1.70022 2.17733 2.23308 2.59481 2.99027 3.37750 3.46767 3.56804 3.72034 3.76300 3.93675 3.94232 4.00267 4.03006 4.20703 4.30032 4.34425 4.37314 4.42029 4.50716 4.52683 4.56991 4.64663 4.67874 4.79989 4.85504 4.88045 4.92833 4.96266 5.03701 5.07199 5.19901 5.22352 5.26834 5.37121 5.43106 5.49501 5.56721 6.19823 6.23125 6.29823 6.46510 7.01238 7.37148 8.09827 8.34558 9.32168 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024603 B = 0.002567 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.821656 B =10903.201567 C =11748.711888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.223 4.223 3 C 0.037 3.963 4 C 0.606 3.394 5 O -0.552 6.552 6 N -0.595 5.595 7 C 0.112 3.888 8 C -0.143 4.143 9 C 0.168 3.832 10 H 0.073 0.927 11 N -0.730 5.730 12 C -0.238 4.238 13 H 0.082 0.918 14 C -0.076 4.076 15 N -0.971 5.971 16 Si 0.974 3.026 17 H -0.288 1.288 18 H -0.300 1.300 19 H -0.268 1.268 20 C 0.134 3.866 21 H 0.073 0.927 22 C -0.144 4.144 23 N -0.246 5.246 24 N -0.386 5.386 25 C 0.269 3.731 26 O -0.296 6.296 27 C 0.036 3.964 28 C -0.164 4.164 29 C 0.112 3.888 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.381 0.619 38 H 0.250 0.750 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.085 0.915 46 H 0.109 0.891 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 -31.090 6.612 31.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.235 4.235 3 C -0.128 4.128 4 C 0.393 3.607 5 O -0.429 6.429 6 N -0.328 5.328 7 C -0.010 4.010 8 C -0.184 4.184 9 C 0.058 3.942 10 H 0.091 0.909 11 N -0.372 5.372 12 C -0.370 4.370 13 H 0.100 0.900 14 C -0.268 4.268 15 N -0.621 5.621 16 Si 0.803 3.197 17 H -0.215 1.215 18 H -0.227 1.227 19 H -0.192 1.192 20 C 0.030 3.970 21 H 0.091 0.909 22 C -0.202 4.202 23 N -0.078 5.078 24 N -0.184 5.184 25 C 0.101 3.899 26 O -0.203 6.203 27 C -0.038 4.038 28 C -0.202 4.202 29 C -0.007 4.007 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.217 0.783 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.099 0.901 43 H 0.167 0.833 44 H 0.169 0.831 45 H 0.103 0.897 46 H 0.127 0.873 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.094 -30.772 6.733 31.765 hybrid contribution -0.399 0.943 -0.523 1.150 sum 3.695 -29.830 6.210 30.692 Atomic orbital electron populations 1.20011 0.87578 1.02529 1.01951 1.19039 0.97914 0.87966 1.18630 1.21600 0.91477 0.93777 1.05952 1.16782 0.84612 0.82448 0.76847 1.90732 1.16483 1.83674 1.52043 1.48427 1.08146 1.05460 1.70756 1.22572 0.77671 0.98734 1.02038 1.23420 1.00614 0.94144 1.00194 1.21363 0.91500 0.86590 0.94717 0.90910 1.42807 1.43358 1.14902 1.36098 1.19669 1.11775 0.94290 1.11254 0.90019 1.25560 1.01333 1.01380 0.98514 1.69826 1.39670 1.30918 1.21725 0.85136 0.77913 0.78715 0.77944 1.21501 1.22677 1.19244 1.21722 0.97437 0.79300 0.98515 0.90937 1.21823 0.99807 1.01481 0.97117 1.77597 1.18118 0.88448 1.23612 1.49685 1.06066 1.04443 1.58174 1.19051 0.84673 0.85853 1.00305 1.86653 1.38113 1.10047 1.85511 1.23589 0.86329 0.93620 1.00310 1.22676 0.99957 0.95676 1.01862 1.22548 0.85374 0.86974 1.05767 0.92137 0.90765 0.91832 0.89839 0.88777 0.92602 0.89173 0.78340 0.94103 0.92131 0.91951 0.93573 0.90144 0.83276 0.83108 0.89680 0.87323 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.67 9.83 71.24 0.70 -0.97 16 2 C -0.22 -6.39 6.14 -19.89 -0.12 -6.51 16 3 C 0.04 1.17 6.95 42.36 0.29 1.47 16 4 C 0.61 21.78 7.64 86.75 0.66 22.44 16 5 O -0.55 -22.30 13.75 -3.93 -0.05 -22.35 16 6 N -0.60 -20.46 3.08 -791.13 -2.44 -22.90 16 7 C 0.11 3.29 6.15 86.93 0.54 3.83 16 8 C -0.14 -4.83 6.79 32.07 0.22 -4.61 16 9 C 0.17 6.65 3.48 46.18 0.16 6.81 16 10 H 0.07 2.79 8.09 -2.38 -0.02 2.77 16 11 N -0.73 -36.32 4.95 -317.33 -1.57 -37.89 16 12 C -0.24 -12.90 9.96 84.03 0.84 -12.06 16 13 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 14 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 15 N -0.97 -59.43 13.06 21.65 0.28 -59.15 16 16 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 17 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 18 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 20 C 0.13 5.08 3.47 45.34 0.16 5.23 16 21 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 22 C -0.14 -5.86 7.93 71.98 0.57 -5.29 16 23 N -0.25 -6.65 9.71 -48.15 -0.47 -7.11 16 24 N -0.39 -7.89 4.08 -457.12 -1.87 -9.76 16 25 C 0.27 6.16 7.48 83.21 0.62 6.78 16 26 O -0.30 -5.14 10.65 -94.01 -1.00 -6.14 16 27 C 0.04 0.22 7.00 72.06 0.50 0.73 16 28 C -0.16 -0.50 6.16 30.86 0.19 -0.31 16 29 C 0.11 0.99 7.41 86.53 0.64 1.63 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.93 6.52 -2.39 -0.02 1.91 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.09 2.65 6.15 -2.39 -0.01 2.64 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.38 20.44 5.07 -92.71 -0.47 19.97 16 38 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.06 2.45 6.73 -2.39 -0.02 2.43 16 40 H 0.06 2.75 6.81 -2.39 -0.02 2.74 16 41 H 0.05 1.92 8.02 -2.38 -0.02 1.90 16 42 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.15 -0.68 8.14 -2.39 -0.02 -0.70 16 45 H 0.08 0.41 8.14 -2.39 -0.02 0.40 16 46 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 47 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 Total: -1.00 -74.34 373.29 1.87 -72.46 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.52 Total: 29.73 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 6.44 Total: 15.33 kcal Atomic # 7 Polarization: -130.76 SS G_CDS: -6.06 Total: -136.82 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -1.06 Total: -28.49 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -74.34 1.87 -72.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986347939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.362 kcal (2) G-P(sol) polarization free energy of solvation -74.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds