Wall clock time and date at job start Tue Mar 31 2020 19:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29950 * 125.30334 * 2 1 4 4 O 1.41879 * 107.41160 * 180.02562 * 3 2 1 5 5 N 1.41874 * 106.38603 * 359.78345 * 4 3 2 6 6 C 1.29951 * 107.41884 * 0.36250 * 5 4 3 7 7 C 1.50695 * 125.30419 * 179.88966 * 6 5 4 8 8 C 1.50699 * 109.47538 * 269.69748 * 7 6 5 9 9 O 1.21289 * 119.99600 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00418 * 179.97438 * 8 7 6 11 11 C 1.47758 * 125.82031 * 0.02562 * 10 8 7 12 12 C 1.55960 * 104.12026 * 205.94160 * 11 10 8 13 13 H 1.09001 * 112.98996 * 199.66110 * 12 11 10 14 14 C 1.52970 * 106.42532 * 74.84675 * 12 11 10 15 15 C 1.52641 * 110.86385 * 198.06915 * 14 12 11 16 16 C 1.53277 * 108.55216 * 62.14619 * 15 14 12 17 17 C 1.52832 * 108.31163 * 296.52864 * 16 15 14 18 18 H 1.08996 * 109.02508 * 298.77703 * 17 16 15 19 19 N 1.46493 * 109.08457 * 179.76083 * 17 16 15 20 20 C 1.36945 * 119.99892 * 83.02975 * 19 17 16 21 21 H 1.08000 * 119.99422 * 359.72792 * 20 19 17 22 22 C 1.38811 * 120.00031 * 179.72716 * 20 19 17 23 23 N 1.31614 * 119.99700 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47294 * 90.00155 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00015 * 24 22 20 27 27 H 1.48505 * 109.47256 * 330.00020 * 24 22 20 28 28 C 1.51034 * 111.46798 * 59.24903 * 17 16 15 29 29 H 1.09003 * 109.33041 * 185.64889 * 28 17 16 30 30 C 1.47609 * 125.82424 * 179.97438 * 10 8 7 31 31 H 1.09000 * 109.47150 * 269.99931 * 1 2 3 32 32 H 1.09002 * 109.46991 * 29.99991 * 1 2 3 33 33 H 1.08996 * 109.47197 * 150.00065 * 1 2 3 34 34 H 1.09004 * 109.46803 * 149.70239 * 7 6 5 35 35 H 1.08998 * 109.47479 * 29.70360 * 7 6 5 36 36 H 1.08999 * 110.49963 * 324.59928 * 11 10 8 37 37 H 1.09005 * 110.49702 * 87.27566 * 11 10 8 38 38 H 1.09001 * 109.19728 * 318.43286 * 14 12 11 39 39 H 1.09005 * 109.19368 * 77.71828 * 14 12 11 40 40 H 1.08995 * 109.62125 * 181.86930 * 15 14 12 41 41 H 1.09002 * 109.62029 * 302.24074 * 15 14 12 42 42 H 1.09003 * 109.69385 * 176.82454 * 16 15 14 43 43 H 1.09002 * 109.69460 * 56.23808 * 16 15 14 44 44 H 0.97000 * 120.00738 * 262.76439 * 19 17 16 45 45 H 0.97004 * 120.00256 * 179.97438 * 23 22 20 46 46 H 1.09002 * 110.07182 * 60.22471 * 30 10 8 47 47 H 1.08993 * 110.12623 * 298.69861 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6246 -0.0006 5 7 3.5709 -0.7936 0.0042 6 6 2.3212 -1.1499 -0.0006 7 6 1.8209 -2.5714 -0.0003 8 6 1.6531 -3.0452 -1.4210 9 8 1.9146 -2.3018 -2.3431 10 7 1.2135 -4.2952 -1.6671 11 6 0.8594 -5.3038 -0.6471 12 6 1.0805 -6.6687 -1.3686 13 1 0.5534 -7.4938 -0.8897 14 6 2.5939 -6.8806 -1.4387 15 6 2.9478 -7.9296 -2.4896 16 6 2.4899 -7.4200 -3.8608 17 6 0.9678 -7.2839 -3.8387 18 1 0.5262 -8.2631 -3.6535 19 7 0.5120 -6.7919 -5.1411 20 6 0.3305 -7.6672 -6.1785 21 1 0.5276 -8.7197 -6.0376 22 6 -0.1068 -7.2017 -7.4109 23 7 -0.2808 -8.0430 -8.4081 24 14 -0.4471 -5.3813 -7.6546 25 1 0.7909 -4.7038 -8.1169 26 1 -1.5150 -5.2091 -8.6721 27 1 -0.8878 -4.7835 -6.3686 28 6 0.5140 -6.3262 -2.7627 29 1 -0.5748 -6.3314 -2.7108 30 6 1.0027 -4.8899 -3.0016 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 0.8611 -2.6186 0.5141 35 1 2.5401 -3.2097 0.5130 36 1 1.5166 -5.2186 0.2183 37 1 -0.1832 -5.1945 -0.3480 38 1 3.0763 -5.9378 -1.6965 39 1 2.9547 -7.2126 -0.4652 40 1 4.0260 -8.0885 -2.4995 41 1 2.4417 -8.8665 -2.2565 42 1 2.7841 -8.1302 -4.6336 43 1 2.9427 -6.4491 -4.0618 44 1 0.3350 -5.8466 -5.2676 45 1 -0.5868 -7.7179 -9.2692 46 1 1.9398 -4.9014 -3.5583 47 1 0.2493 -4.3241 -3.5495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992857657.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:39 Heat of formation + Delta-G solvation = 68.838070 kcal Electronic energy + Delta-G solvation = -29637.774952 eV Core-core repulsion = 25632.024923 eV Total energy + Delta-G solvation = -4005.750029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87069 -40.81486 -38.88342 -35.73082 -34.90109 -33.98281 -33.74296 -31.76351 -31.19500 -29.90287 -29.25110 -29.00327 -26.88763 -24.88798 -23.31552 -22.79736 -21.87682 -21.24875 -20.76447 -19.57146 -18.78074 -17.88079 -17.33244 -17.06852 -16.42239 -16.23016 -15.58452 -15.36387 -14.85675 -14.66571 -14.48886 -14.21731 -14.15027 -13.82545 -13.74587 -13.41308 -13.32113 -13.15305 -12.76634 -12.69781 -12.63274 -12.26462 -12.07640 -11.99831 -11.92312 -11.55446 -11.33457 -11.27609 -11.20033 -11.04456 -10.94678 -10.87660 -10.39636 -10.18421 -10.06566 -10.03912 -9.84280 -9.60653 -8.93330 -8.81839 -7.31566 -5.80512 -3.16622 0.22697 1.56334 2.28221 2.29301 2.67081 2.85681 3.35257 3.39540 3.45100 3.47446 4.02363 4.19318 4.26005 4.39389 4.55246 4.57350 4.65530 4.67313 4.78871 4.88244 4.92560 5.07613 5.12133 5.19810 5.23564 5.26112 5.42480 5.43307 5.47702 5.52992 5.55144 5.59329 5.71589 5.79456 5.93802 5.95938 6.06764 6.13861 6.21812 6.31701 6.37641 6.56455 6.60217 6.78531 6.96671 7.24464 7.83027 7.94868 8.38233 9.16164 9.88959 10.07339 11.37710 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.003252 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.290263 B = 8608.261873 C = 9855.683398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.087 3.913 3 N -0.278 5.278 4 O 0.028 5.972 5 N -0.261 5.261 6 C 0.096 3.904 7 C -0.076 4.076 8 C 0.530 3.470 9 O -0.530 6.530 10 N -0.611 5.611 11 C 0.094 3.906 12 C -0.090 4.090 13 H 0.104 0.896 14 C -0.112 4.112 15 C -0.117 4.117 16 C -0.137 4.137 17 C 0.196 3.804 18 H 0.060 0.940 19 N -0.751 5.751 20 C -0.244 4.244 21 H 0.091 0.909 22 C 0.007 3.993 23 N -0.933 5.933 24 Si 0.880 3.120 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.278 1.278 28 C -0.099 4.099 29 H 0.081 0.919 30 C 0.113 3.887 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.360 0.640 45 H 0.260 0.740 46 H 0.079 0.921 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.327 7.627 24.777 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 N -0.023 5.023 4 O -0.114 6.114 5 N -0.003 5.003 6 C -0.088 4.088 7 C -0.117 4.117 8 C 0.316 3.684 9 O -0.406 6.406 10 N -0.345 5.345 11 C -0.029 4.029 12 C -0.109 4.109 13 H 0.122 0.878 14 C -0.150 4.150 15 C -0.156 4.156 16 C -0.177 4.177 17 C 0.086 3.914 18 H 0.078 0.922 19 N -0.393 5.393 20 C -0.373 4.373 21 H 0.109 0.891 22 C -0.189 4.189 23 N -0.581 5.581 24 Si 0.711 3.289 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.118 4.118 29 H 0.100 0.900 30 C -0.008 4.008 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.193 0.807 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.663 8.762 24.125 25.720 hybrid contribution -0.807 0.876 -0.428 1.266 sum 0.856 9.639 23.696 25.596 Atomic orbital electron populations 1.20589 0.84204 1.05711 1.04630 1.24512 1.00324 0.88795 0.95920 1.79916 0.89064 1.19549 1.13809 1.93394 1.20201 1.13226 1.84535 1.79910 1.17332 0.91475 1.11578 1.23763 0.90095 0.97675 0.97255 1.20326 1.04987 0.89091 0.97281 1.19629 0.77876 0.80890 0.90024 1.90813 1.49923 1.53866 1.46007 1.48660 1.64907 1.11783 1.09188 1.22855 1.00572 0.88196 0.91268 1.22499 0.97142 0.95815 0.95465 0.87836 1.21511 0.94335 1.00050 0.99090 1.21508 1.00278 0.98148 0.95618 1.22276 0.98594 1.01161 0.95671 1.19634 0.92265 0.95362 0.84131 0.92231 1.42865 1.81484 1.06629 1.08346 1.19045 1.37864 0.91715 0.88717 0.89100 1.24649 1.01400 0.96900 0.95945 1.69692 1.52712 1.33169 1.02479 0.86628 0.78075 0.86856 0.77390 1.21001 1.21686 1.20428 1.21875 1.01010 0.93776 0.95174 0.90041 1.22072 1.02097 0.93261 0.83402 0.88397 0.88915 0.88878 0.85398 0.85728 0.90334 0.90719 0.91965 0.92351 0.92567 0.91944 0.91220 0.92648 0.80694 0.93026 0.90301 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 10.05 36.01 0.36 -0.15 16 2 C 0.09 0.87 7.19 -82.38 -0.59 0.28 16 3 N -0.28 -3.52 12.98 33.74 0.44 -3.08 16 4 O 0.03 0.40 13.71 12.02 0.16 0.57 16 5 N -0.26 -3.48 12.98 33.74 0.44 -3.04 16 6 C 0.10 1.01 5.68 -82.38 -0.47 0.54 16 7 C -0.08 -0.55 4.87 -29.04 -0.14 -0.69 16 8 C 0.53 6.19 7.85 -10.99 -0.09 6.11 16 9 O -0.53 -8.91 16.37 5.55 0.09 -8.82 16 10 N -0.61 -6.57 2.78 -169.56 -0.47 -7.04 16 11 C 0.09 0.65 5.99 -1.77 -0.01 0.64 16 12 C -0.09 -0.80 3.76 -88.36 -0.33 -1.13 16 13 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 14 C -0.11 -1.09 4.82 -26.93 -0.13 -1.22 16 15 C -0.12 -1.38 5.93 -26.77 -0.16 -1.54 16 16 C -0.14 -2.17 5.33 -26.67 -0.14 -2.31 16 17 C 0.20 3.29 2.44 -69.01 -0.17 3.12 16 18 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 19 N -0.75 -16.56 4.83 -54.48 -0.26 -16.83 16 20 C -0.24 -6.57 10.38 -15.06 -0.16 -6.72 16 21 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 22 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 23 N -0.93 -28.84 13.97 55.49 0.78 -28.07 16 24 Si 0.88 22.05 27.74 -169.99 -4.71 17.33 16 25 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -6.52 6.52 56.52 0.37 -6.16 16 28 C -0.10 -1.27 2.45 -90.61 -0.22 -1.50 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 30 C 0.11 1.59 4.77 -3.13 -0.01 1.58 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.45 7.77 -51.93 -0.40 0.04 16 34 H 0.13 0.39 7.78 -51.93 -0.40 -0.02 16 35 H 0.12 0.66 7.85 -51.93 -0.41 0.25 16 36 H 0.08 0.35 7.33 -51.93 -0.38 -0.03 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.70 7.01 -51.93 -0.36 0.33 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.05 0.93 6.61 -51.93 -0.34 0.58 16 44 H 0.36 7.99 4.67 -40.82 -0.19 7.80 16 45 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.08 1.29 6.34 -51.93 -0.33 0.96 16 47 H 0.07 1.10 8.03 -51.93 -0.42 0.68 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -35.85 374.21 -7.31 -43.17 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.06 Total: 3.08 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.36 Total: -2.89 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.92 Total: -58.07 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.26 Total: -8.25 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.85 -7.31 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992857657.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.005 kcal (2) G-P(sol) polarization free energy of solvation -35.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds