Wall clock time and date at job start Tue Mar 31 2020 19:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30648 * 128.64317 * 2 1 4 4 O 1.20844 * 109.61910 * 180.23581 * 3 2 1 5 5 N 1.20902 * 115.90694 * 359.73579 * 4 3 2 6 6 C 1.31609 * 109.18107 * 359.97438 * 5 4 3 7 7 C 1.48277 * 128.71089 * 179.97438 * 6 5 4 8 8 O 1.21497 * 120.00072 * 186.68880 * 7 6 5 9 9 N 1.34774 * 119.99990 * 6.68748 * 7 6 5 10 10 C 1.46928 * 120.63130 * 354.96384 * 9 7 6 11 11 C 1.53629 * 108.53988 * 126.37084 * 10 9 7 12 12 C 1.53035 * 109.24326 * 54.85480 * 11 10 9 13 13 C 1.53004 * 109.46106 * 178.48840 * 12 11 10 14 14 H 1.09000 * 109.87524 * 298.81058 * 13 12 11 15 15 C 1.54327 * 109.87825 * 59.98373 * 13 12 11 16 16 C 1.55161 * 102.93998 * 141.61203 * 15 13 12 17 17 C 1.54910 * 101.57860 * 324.49893 * 16 15 13 18 18 N 1.47020 * 109.88355 * 177.79435 * 13 12 11 19 19 C 1.36932 * 125.64854 * 61.68003 * 18 13 12 20 20 H 1.07998 * 120.00053 * 358.28853 * 19 18 13 21 21 C 1.38814 * 119.99987 * 178.29726 * 19 18 13 22 22 N 1.31622 * 119.99742 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00052 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47451 * 59.99924 * 23 21 19 25 25 H 1.48501 * 109.46846 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46962 * 299.99327 * 23 21 19 27 27 C 1.53040 * 109.54008 * 298.51303 * 12 11 10 28 28 C 1.46924 * 120.63061 * 175.24646 * 9 7 6 29 29 H 1.08994 * 109.47281 * 270.16370 * 1 2 3 30 30 H 1.09002 * 109.47087 * 30.16579 * 1 2 3 31 31 H 1.09003 * 109.47168 * 150.16141 * 1 2 3 32 32 H 1.09001 * 109.58608 * 246.20011 * 10 9 7 33 33 H 1.09001 * 109.58446 * 6.63140 * 10 9 7 34 34 H 1.09001 * 109.63321 * 294.86474 * 11 10 9 35 35 H 1.09005 * 109.45437 * 174.74610 * 11 10 9 36 36 H 1.09005 * 109.45839 * 58.53568 * 12 11 10 37 37 H 1.08998 * 110.71989 * 259.97419 * 15 13 12 38 38 H 1.08996 * 110.71896 * 23.24920 * 15 13 12 39 39 H 1.08997 * 110.99942 * 206.42204 * 16 15 13 40 40 H 1.09000 * 111.03727 * 82.58537 * 16 15 13 41 41 H 1.09000 * 110.36710 * 278.16875 * 17 16 15 42 42 H 1.09003 * 110.45893 * 155.89651 * 17 16 15 43 43 H 0.97004 * 119.99841 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.49147 * 301.41000 * 27 12 11 45 45 H 1.09000 * 109.49676 * 181.31940 * 27 12 11 46 46 H 1.08998 * 109.58464 * 353.37639 * 28 9 7 47 47 H 1.09007 * 109.58852 * 113.79835 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4653 0.6265 -0.0047 5 7 3.6102 -0.5738 -0.0032 6 6 2.4279 -1.1520 0.0039 7 6 2.1033 -2.5988 0.0078 8 8 0.9500 -2.9630 -0.1081 9 7 3.0876 -3.5100 0.1397 10 6 4.4958 -3.0917 0.1702 11 6 5.1498 -3.6696 1.4345 12 6 4.9442 -5.1858 1.4607 13 6 5.6262 -5.7714 2.6988 14 1 6.6971 -5.5718 2.6613 15 6 5.0180 -5.1524 3.9750 16 6 4.9717 -6.3539 4.9558 17 6 4.6452 -7.5257 3.9967 18 7 5.3897 -7.2211 2.7613 19 6 5.7946 -8.1368 1.8272 20 1 6.3135 -7.8085 0.9387 21 6 5.5380 -9.4870 2.0220 22 7 4.9059 -9.8871 3.1050 23 14 6.0910 -10.7362 0.7481 24 1 7.5668 -10.6696 0.5975 25 1 5.6999 -12.0992 1.1891 26 1 5.4463 -10.4330 -0.5549 27 6 3.4468 -5.4986 1.5075 28 6 2.7732 -4.9410 0.2497 29 1 -0.3633 0.0029 1.0276 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3634 -0.8914 -0.5113 32 1 5.0083 -3.4690 -0.7147 33 1 4.5532 -2.0034 0.1922 34 1 4.6931 -3.2252 2.3189 35 1 6.2168 -3.4471 1.4254 36 1 5.3795 -5.6268 0.5639 37 1 5.6598 -4.3618 4.3638 38 1 4.0143 -4.7749 3.7800 39 1 4.1825 -6.2234 5.6963 40 1 5.9374 -6.5020 5.4391 41 1 3.5747 -7.5638 3.7949 42 1 4.9844 -8.4709 4.4207 43 1 4.7262 -10.8306 3.2410 44 1 3.0063 -5.0370 2.3912 45 1 3.3018 -6.5780 1.5497 46 1 1.6939 -5.0732 0.3240 47 1 3.1482 -5.4660 -0.6289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004623397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:04 Heat of formation + Delta-G solvation = 100.909296 kcal Electronic energy + Delta-G solvation = -30135.174823 eV Core-core repulsion = 26130.815506 eV Total energy + Delta-G solvation = -4004.359317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.00055 -41.51769 -39.95898 -37.90376 -36.28189 -36.00339 -34.74342 -33.71264 -32.17019 -31.22746 -30.44777 -29.24724 -27.23413 -26.48242 -25.18976 -24.24632 -23.58480 -22.72616 -21.87474 -21.31174 -20.18578 -19.86145 -18.87075 -18.67557 -18.23765 -17.30048 -16.93648 -16.48775 -16.27976 -15.70714 -15.55930 -15.31942 -15.16483 -14.73824 -14.58799 -14.40527 -14.33117 -14.05077 -13.74570 -13.69484 -13.57574 -13.19763 -12.98426 -12.84379 -12.80013 -12.68874 -12.54679 -12.34551 -12.15811 -12.05954 -11.82892 -11.75866 -11.57140 -11.40253 -11.37143 -11.23422 -11.06857 -10.93106 -10.65803 -9.87917 -8.77337 -7.68292 -5.11639 -0.44098 0.21419 1.35158 1.48043 1.49410 1.55470 1.69908 2.21067 2.31251 2.53415 2.66718 3.29835 3.39323 3.57898 3.66842 3.83484 3.88312 4.03739 4.07381 4.15575 4.20877 4.26994 4.31985 4.36498 4.54265 4.58248 4.58821 4.69768 4.76292 4.81220 4.85549 4.89510 4.98383 5.07609 5.08407 5.10517 5.16509 5.19783 5.26121 5.47777 5.55997 5.60155 5.65217 5.74244 5.91741 6.06706 6.40932 6.66324 7.19554 7.33359 7.89493 8.53661 9.31714 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019156 B = 0.003026 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.306801 B = 9249.443718 C = 9622.241850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.066 3.934 3 N -0.360 5.360 4 O 0.344 5.656 5 N -0.314 5.314 6 C -0.048 4.048 7 C 0.600 3.400 8 O -0.542 6.542 9 N -0.585 5.585 10 C 0.081 3.919 11 C -0.115 4.115 12 C -0.086 4.086 13 C 0.159 3.841 14 H 0.031 0.969 15 C -0.115 4.115 16 C -0.137 4.137 17 C 0.152 3.848 18 N -0.608 5.608 19 C -0.216 4.216 20 H 0.079 0.921 21 C -0.068 4.068 22 N -0.949 5.949 23 Si 0.968 3.032 24 H -0.280 1.280 25 H -0.299 1.299 26 H -0.280 1.280 27 C -0.105 4.105 28 C 0.121 3.879 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.057 0.943 41 H -0.017 1.017 42 H 0.070 0.930 43 H 0.242 0.758 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.085 0.915 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 21.662 -4.625 22.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 N -0.086 5.086 4 O 0.120 5.880 5 N -0.036 5.036 6 C -0.213 4.213 7 C 0.385 3.615 8 O -0.419 6.419 9 N -0.316 5.316 10 C -0.041 4.041 11 C -0.154 4.154 12 C -0.107 4.107 13 C 0.052 3.948 14 H 0.048 0.952 15 C -0.153 4.153 16 C -0.176 4.176 17 C 0.027 3.973 18 N -0.332 5.332 19 C -0.346 4.346 20 H 0.097 0.903 21 C -0.260 4.260 22 N -0.600 5.600 23 Si 0.798 3.202 24 H -0.206 1.206 25 H -0.226 1.226 26 H -0.207 1.207 27 C -0.143 4.143 28 C -0.001 4.001 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.143 0.857 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.001 0.999 42 H 0.088 0.912 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.104 0.896 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.243 21.918 -4.731 22.821 hybrid contribution -0.325 -2.038 -0.543 2.134 sum -4.567 19.880 -5.274 21.069 Atomic orbital electron populations 1.20506 0.81143 1.05981 1.05795 1.26615 1.01372 0.84333 0.97626 1.75091 0.91090 1.23899 1.18540 1.85077 1.23464 1.16775 1.62714 1.75126 1.22325 0.92849 1.13321 1.25944 0.88789 0.97809 1.08722 1.16744 0.85026 0.82166 0.77547 1.90784 1.19979 1.79776 1.51342 1.48080 1.07426 1.06910 1.69219 1.22747 0.78799 1.03175 0.99343 1.21953 1.01915 0.94140 0.97380 1.21456 0.95000 0.95073 0.99145 1.21140 0.96171 0.83485 0.93968 0.95167 1.22627 1.01108 0.97073 0.94491 1.22862 1.00908 0.96274 0.97554 1.21736 0.92119 0.97408 0.86075 1.44725 1.64296 1.01660 1.22515 1.19271 1.28949 0.87156 0.99204 0.90341 1.25471 1.02064 0.98706 0.99792 1.70029 1.47996 1.13853 1.28137 0.85289 0.77980 0.78243 0.78679 1.20635 1.22597 1.20676 1.21679 0.95788 1.00464 0.96389 1.21685 1.01333 0.78240 0.98794 0.87522 0.87301 0.88596 0.90115 0.85682 0.91250 0.88990 0.92913 0.89669 0.91085 0.90725 0.92377 0.99863 0.91182 0.94772 0.92262 0.92530 0.89615 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.26 71.24 0.73 -0.25 16 2 C 0.07 1.21 7.79 45.18 0.35 1.57 16 3 N -0.36 -6.70 12.22 -51.77 -0.63 -7.33 16 4 O 0.34 6.34 11.65 140.84 1.64 7.98 16 5 N -0.31 -6.26 8.87 -52.03 -0.46 -6.73 16 6 C -0.05 -1.06 7.26 44.29 0.32 -0.74 16 7 C 0.60 15.73 7.72 86.91 0.67 16.40 16 8 O -0.54 -16.40 15.36 -3.71 -0.06 -16.46 16 9 N -0.58 -15.06 2.97 -820.98 -2.43 -17.49 16 10 C 0.08 1.79 6.37 86.51 0.55 2.34 16 11 C -0.12 -2.71 5.11 30.82 0.16 -2.56 16 12 C -0.09 -2.73 1.91 -10.77 -0.02 -2.75 16 13 C 0.16 5.87 2.95 45.34 0.13 6.00 16 14 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 15 C -0.12 -3.63 5.22 31.79 0.17 -3.46 16 16 C -0.14 -5.01 7.09 31.99 0.23 -4.79 16 17 C 0.15 7.30 5.96 86.86 0.52 7.82 16 18 N -0.61 -29.14 2.27 -668.26 -1.51 -30.65 16 19 C -0.22 -11.49 9.89 84.03 0.83 -10.66 16 20 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 21 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 22 N -0.95 -55.91 10.06 21.65 0.22 -55.69 16 23 Si 0.97 45.22 29.55 68.60 2.03 47.24 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 C -0.11 -3.49 4.93 30.67 0.15 -3.34 16 28 C 0.12 3.51 6.42 86.36 0.55 4.07 16 29 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 1.42 7.23 -2.39 -0.02 1.40 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.13 2.52 3.87 -28.69 -0.11 2.41 16 34 H 0.07 1.60 7.10 -2.39 -0.02 1.59 16 35 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.05 1.85 8.05 -2.38 -0.02 1.83 16 37 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.07 2.15 5.49 -2.39 -0.01 2.14 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 41 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 42 H 0.07 3.93 5.75 -2.39 -0.01 3.91 16 43 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 44 H 0.06 1.95 6.14 -2.39 -0.01 1.93 16 45 H 0.06 2.37 7.52 -2.39 -0.02 2.35 16 46 H 0.09 2.58 7.03 -2.39 -0.02 2.57 16 47 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -63.79 364.36 5.49 -58.30 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.89 Total: 14.48 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 5.81 Total: 6.34 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -4.83 Total: -117.89 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 1.58 Total: -8.47 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -63.79 5.49 -58.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004623397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.210 kcal (2) G-P(sol) polarization free energy of solvation -63.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds