Wall clock time and date at job start Tue Mar 31 2020 18:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41511 * 126.16378 * 2 1 4 4 C 1.47717 * 125.96533 * 0.07330 * 3 2 1 5 5 O 1.21571 * 120.00630 * 359.87987 * 4 3 2 6 6 N 1.34780 * 119.99507 * 179.87940 * 4 3 2 7 7 C 1.46501 * 119.99951 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.49666 * 324.99678 * 7 6 4 9 9 C 1.53039 * 109.49940 * 204.93635 * 7 6 4 10 10 C 1.53042 * 109.54025 * 178.68328 * 9 7 6 11 11 C 1.53185 * 109.31170 * 61.36241 * 10 9 7 12 12 N 1.46924 * 108.77862 * 305.36632 * 11 10 9 13 13 C 1.36944 * 120.63045 * 233.61459 * 12 11 10 14 14 H 1.07998 * 119.99982 * 152.62838 * 13 12 11 15 15 C 1.38815 * 119.99954 * 332.61981 * 13 12 11 16 16 N 1.31614 * 119.99679 * 159.34605 * 15 13 12 17 17 Si 1.86800 * 119.99989 * 339.34802 * 15 13 12 18 18 H 1.48505 * 109.47182 * 92.95238 * 17 15 13 19 19 H 1.48498 * 109.46845 * 212.95353 * 17 15 13 20 20 H 1.48501 * 109.47015 * 332.95156 * 17 15 13 21 21 C 1.46933 * 118.76639 * 53.58876 * 12 11 10 22 22 N 1.32116 * 108.07802 * 179.97438 * 3 2 1 23 23 N 1.39402 * 108.10892 * 0.03982 * 22 3 2 24 24 C 1.34852 * 126.14492 * 180.15252 * 2 1 3 25 25 O 1.36028 * 128.64165 * 0.11340 * 24 2 1 26 26 C 1.43518 * 114.97682 * 164.37612 * 25 24 2 27 27 C 1.53229 * 109.28933 * 47.20551 * 26 25 24 28 28 C 1.46718 * 128.21109 * 180.18669 * 23 22 3 29 29 H 1.09000 * 109.47230 * 269.85147 * 1 2 3 30 30 H 1.09006 * 109.46943 * 29.85026 * 1 2 3 31 31 H 1.08994 * 109.47024 * 149.84546 * 1 2 3 32 32 H 0.96995 * 120.00396 * 359.97438 * 6 4 3 33 33 H 1.09000 * 109.45908 * 298.69894 * 9 7 6 34 34 H 1.09001 * 109.46094 * 58.65853 * 9 7 6 35 35 H 1.08998 * 109.49788 * 181.31558 * 10 9 7 36 36 H 1.09003 * 109.49150 * 301.37671 * 10 9 7 37 37 H 1.08997 * 109.58648 * 65.15764 * 11 10 9 38 38 H 1.09008 * 109.58815 * 185.43687 * 11 10 9 39 39 H 0.97001 * 119.99991 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.61728 * 186.64351 * 21 12 11 41 41 H 1.08993 * 109.56042 * 66.21217 * 21 12 11 42 42 H 1.08998 * 109.50441 * 287.26056 * 26 25 24 43 43 H 1.09002 * 109.50342 * 167.14754 * 26 25 24 44 44 H 1.08999 * 109.50202 * 175.47203 * 27 26 25 45 45 H 1.08992 * 109.49936 * 55.35566 * 27 26 25 46 46 H 1.08998 * 109.76543 * 43.27452 * 28 23 22 47 47 H 1.09004 * 109.76504 * 282.55560 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3421 1.1425 0.0000 4 6 1.8888 2.5484 0.0015 5 8 0.7003 2.8039 0.0007 6 7 2.7930 3.5479 0.0038 7 6 2.3435 4.9422 0.0059 8 1 1.4312 5.0312 -0.5840 9 6 3.4322 5.8308 -0.6001 10 6 2.9506 7.2832 -0.6285 11 6 2.6822 7.7560 0.8036 12 7 1.7451 6.8218 1.4423 13 6 0.5923 7.2784 2.0236 14 1 -0.2712 6.6332 2.0900 15 6 0.5338 8.5704 2.5279 16 7 -0.6320 9.1539 2.7088 17 14 2.1095 9.4808 2.9494 18 1 2.5418 10.2893 1.7812 19 1 1.8686 10.3762 4.1093 20 1 3.1707 8.5005 3.2929 21 6 2.0674 5.3883 1.4452 22 7 3.5980 0.7323 0.0006 23 7 3.5986 -0.6617 0.0000 24 6 2.3025 -1.0890 -0.0029 25 8 1.9455 -2.4016 -0.0085 26 6 2.9960 -3.3138 -0.3607 27 6 4.2602 -2.9594 0.4294 28 6 4.7517 -1.5688 0.0041 29 1 -0.3634 -0.0027 1.0277 30 1 -0.3633 0.8914 -0.5115 31 1 -0.3633 -0.8885 -0.5162 32 1 3.7413 3.3440 0.0048 33 1 4.3367 5.7600 0.0040 34 1 3.6475 5.4996 -1.6161 35 1 3.7171 7.9118 -1.0816 36 1 2.0327 7.3506 -1.2126 37 1 3.6173 7.7753 1.3633 38 1 2.2479 8.7556 0.7831 39 1 -0.6730 10.0566 3.0615 40 1 1.2256 4.8248 1.8473 41 1 2.9521 5.2145 2.0576 42 1 3.2011 -3.2379 -1.4285 43 1 2.6899 -4.3318 -0.1199 44 1 5.0356 -3.6977 0.2255 45 1 4.0333 -2.9540 1.4955 46 1 5.5005 -1.2099 0.7102 47 1 5.1832 -1.6210 -0.9956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007468943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:18 Heat of formation + Delta-G solvation = 6.066072 kcal Electronic energy + Delta-G solvation = -29206.160150 eV Core-core repulsion = 25197.688123 eV Total energy + Delta-G solvation = -4008.472027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.96721 -40.98897 -39.60053 -38.94216 -36.10020 -35.84792 -34.33477 -32.71997 -32.53426 -32.22227 -30.58129 -27.78775 -27.31882 -27.12893 -25.43035 -23.96489 -23.73192 -22.63602 -21.43961 -20.88021 -20.80792 -19.16444 -18.77208 -17.75219 -17.52699 -17.22686 -17.04184 -16.49859 -16.32694 -16.28083 -15.78378 -15.65658 -15.44249 -15.17686 -15.03791 -14.76232 -14.51930 -14.13634 -14.08491 -13.88900 -13.72883 -13.39965 -13.30274 -13.14231 -12.79898 -12.63642 -12.54483 -12.43436 -12.30827 -12.07852 -11.87453 -11.80002 -11.66902 -11.49482 -11.35592 -11.14975 -10.77355 -10.34320 -10.11346 -9.33275 -8.92737 -8.16399 -5.50318 0.16335 0.98042 1.04701 1.30607 1.42673 1.53124 1.77892 2.19967 2.27582 2.42233 2.98469 3.07282 3.35636 3.53177 3.57616 3.81549 3.91986 3.98256 4.01227 4.03648 4.11328 4.29417 4.32724 4.34855 4.43179 4.49380 4.51226 4.63454 4.65612 4.70161 4.84693 4.89545 4.92204 4.94257 4.98930 5.00601 5.04869 5.08311 5.20079 5.22611 5.32790 5.43493 5.52624 5.85393 6.11689 6.13530 6.18716 6.54738 6.89857 7.12176 7.60340 7.98379 9.03968 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023373 B = 0.002549 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.692978 B =10981.478258 C =11470.053050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.225 4.225 3 C 0.037 3.963 4 C 0.594 3.406 5 O -0.555 6.555 6 N -0.693 5.693 7 C 0.138 3.862 8 H 0.062 0.938 9 C -0.106 4.106 10 C -0.125 4.125 11 C 0.112 3.888 12 N -0.616 5.616 13 C -0.255 4.255 14 H 0.037 0.963 15 C -0.037 4.037 16 N -0.959 5.959 17 Si 0.958 3.042 18 H -0.265 1.265 19 H -0.311 1.311 20 H -0.258 1.258 21 C 0.145 3.855 22 N -0.247 5.247 23 N -0.384 5.384 24 C 0.268 3.732 25 O -0.296 6.296 26 C 0.034 3.966 27 C -0.165 4.165 28 C 0.113 3.887 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.417 0.583 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.043 0.957 38 H 0.052 0.948 39 H 0.263 0.737 40 H 0.032 0.968 41 H 0.041 0.959 42 H 0.084 0.916 43 H 0.148 0.852 44 H 0.153 0.847 45 H 0.082 0.918 46 H 0.116 0.884 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.920 -28.446 -10.032 35.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.237 4.237 3 C -0.129 4.129 4 C 0.379 3.621 5 O -0.430 6.430 6 N -0.344 5.344 7 C 0.032 3.968 8 H 0.080 0.920 9 C -0.144 4.144 10 C -0.164 4.164 11 C -0.012 4.012 12 N -0.341 5.341 13 C -0.384 4.384 14 H 0.055 0.945 15 C -0.232 4.232 16 N -0.605 5.605 17 Si 0.786 3.214 18 H -0.191 1.191 19 H -0.240 1.240 20 H -0.183 1.183 21 C 0.019 3.981 22 N -0.079 5.079 23 N -0.182 5.182 24 C 0.101 3.899 25 O -0.203 6.203 26 C -0.039 4.039 27 C -0.203 4.203 28 C -0.006 4.006 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.254 0.746 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.102 0.898 43 H 0.166 0.834 44 H 0.171 0.829 45 H 0.100 0.900 46 H 0.134 0.866 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 19.066 -28.028 -9.944 35.326 hybrid contribution -0.487 0.404 0.670 0.921 sum 18.579 -27.624 -9.274 34.558 Atomic orbital electron populations 1.20011 0.87966 1.02510 1.01799 1.19099 0.97747 0.88301 1.18551 1.21709 0.91381 0.93958 1.05893 1.17175 0.85487 0.83207 0.76274 1.90818 1.17515 1.83901 1.50800 1.45734 1.10207 1.05067 1.73428 1.21391 0.98720 0.79385 0.97312 0.91955 1.21650 0.97023 0.93627 1.02076 1.21919 1.01678 0.96488 0.96341 1.21562 0.92534 0.93306 0.93765 1.44364 1.22532 1.02470 1.64770 1.18790 0.89194 0.98171 1.32294 0.94484 1.25990 0.99860 0.98158 0.99182 1.69997 1.26159 1.14418 1.49908 0.85746 0.80622 0.78018 0.77057 1.19144 1.23978 1.18264 1.21264 0.98119 0.83782 0.94962 1.77411 1.18038 0.88817 1.23586 1.49587 1.06038 1.04220 1.58374 1.19027 0.84700 0.85851 1.00327 1.86674 1.38245 1.10012 1.85395 1.23605 0.86293 0.93598 1.00451 1.22679 1.00014 0.95845 1.01786 1.22553 0.85248 0.86783 1.05970 0.92492 0.92004 0.90644 0.74586 0.89572 0.89091 0.88218 0.92991 0.93868 0.93021 0.92817 0.94896 0.94151 0.89802 0.83403 0.82931 0.89979 0.86555 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.87 9.83 71.24 0.70 -1.17 16 2 C -0.22 -6.55 6.14 -19.83 -0.12 -6.67 16 3 C 0.04 1.12 7.11 42.41 0.30 1.42 16 4 C 0.59 20.88 7.79 86.75 0.68 21.56 16 5 O -0.55 -23.99 14.54 -3.94 -0.06 -24.05 16 6 N -0.69 -20.98 5.08 -445.14 -2.26 -23.24 16 7 C 0.14 4.86 2.60 45.07 0.12 4.98 16 8 H 0.06 2.62 7.58 -2.39 -0.02 2.60 16 9 C -0.11 -2.89 5.35 30.62 0.16 -2.72 16 10 C -0.12 -4.01 6.08 30.67 0.19 -3.82 16 11 C 0.11 4.74 4.20 86.36 0.36 5.10 16 12 N -0.62 -30.95 2.77 -699.09 -1.94 -32.88 16 13 C -0.25 -15.64 10.03 84.03 0.84 -14.80 16 14 H 0.04 2.57 8.06 -2.91 -0.02 2.55 16 15 C -0.04 -2.30 5.23 84.86 0.44 -1.85 16 16 N -0.96 -63.10 13.97 21.65 0.30 -62.79 16 17 Si 0.96 47.68 24.35 68.60 1.67 49.35 16 18 H -0.27 -12.14 6.62 99.48 0.66 -11.48 16 19 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16 20 H -0.26 -12.18 6.64 99.48 0.66 -11.52 16 21 C 0.15 6.32 6.09 86.36 0.53 6.84 16 22 N -0.25 -6.27 12.32 -48.01 -0.59 -6.87 16 23 N -0.38 -7.52 4.08 -457.12 -1.87 -9.38 16 24 C 0.27 6.16 7.48 83.19 0.62 6.78 16 25 O -0.30 -5.22 10.65 -93.86 -1.00 -6.21 16 26 C 0.03 0.20 7.00 72.06 0.50 0.71 16 27 C -0.17 -0.43 6.16 30.84 0.19 -0.24 16 28 C 0.11 0.86 7.41 86.51 0.64 1.50 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 2.04 6.53 -2.38 -0.02 2.02 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.42 10.00 8.30 -92.71 -0.77 9.23 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.04 1.69 7.08 -2.39 -0.02 1.67 16 38 H 0.05 2.41 4.50 -2.38 -0.01 2.40 16 39 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 40 H 0.03 1.63 7.93 -2.39 -0.02 1.61 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.15 -0.80 8.14 -2.39 -0.02 -0.82 16 45 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 Total: -1.00 -85.23 370.76 0.55 -84.68 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.13 Total: 13.79 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 6.16 Total: 17.62 kcal Atomic # 7 Polarization: -128.81 SS G_CDS: -6.35 Total: -135.17 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -1.06 Total: -30.26 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.67 Total: 49.35 kcal Total: -85.23 0.55 -84.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007468943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.745 kcal (2) G-P(sol) polarization free energy of solvation -85.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds