Wall clock time and date at job start Tue Mar 31 2020 19:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31881 * 119.93160 * 2 1 4 4 N 1.28279 * 122.62374 * 180.02562 * 3 2 1 5 5 C 1.32482 * 122.21943 * 359.97438 * 4 3 2 6 6 O 1.35443 * 120.25776 * 179.97438 * 5 4 3 7 7 C 1.40463 * 119.49483 * 0.02562 * 5 4 3 8 8 C 1.47821 * 121.17840 * 180.02562 * 7 5 4 9 9 O 1.21554 * 120.00382 * 89.99792 * 8 7 5 10 10 N 1.34777 * 120.00068 * 270.00049 * 8 7 5 11 11 C 1.46498 * 120.00184 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47023 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.52230 * 55.08465 * 12 11 10 14 14 C 1.53075 * 109.61891 * 175.10475 * 12 11 10 15 15 C 1.53049 * 109.65827 * 181.17019 * 14 12 11 16 16 C 1.53194 * 109.30953 * 298.70035 * 15 14 12 17 17 N 1.46927 * 108.77350 * 54.63626 * 16 15 14 18 18 C 1.36940 * 120.62896 * 126.41415 * 17 16 15 19 19 H 1.07998 * 120.00141 * 332.50547 * 18 17 16 20 20 C 1.38815 * 119.99914 * 152.50790 * 18 17 16 21 21 N 1.31619 * 119.99893 * 159.29065 * 20 18 17 22 22 Si 1.86800 * 120.00083 * 339.29697 * 20 18 17 23 23 H 1.48494 * 109.47321 * 92.95015 * 22 20 18 24 24 H 1.48501 * 109.47194 * 212.95594 * 22 20 18 25 25 H 1.48509 * 109.46983 * 332.94818 * 22 20 18 26 26 C 1.46924 * 118.73761 * 306.38636 * 17 16 15 27 27 C 1.38479 * 119.93153 * 180.27908 * 2 1 3 28 28 C 1.50701 * 121.06204 * 0.03045 * 27 2 1 29 29 H 1.09002 * 109.46975 * 90.00224 * 1 2 3 30 30 H 1.09002 * 109.46835 * 209.99927 * 1 2 3 31 31 H 1.08993 * 109.47455 * 330.00089 * 1 2 3 32 32 H 0.96705 * 113.99748 * 270.02941 * 6 5 4 33 33 H 0.97001 * 119.99597 * 0.02562 * 10 8 7 34 34 H 1.08996 * 109.46951 * 60.00123 * 11 10 8 35 35 H 1.09005 * 109.46740 * 299.99775 * 11 10 8 36 36 H 1.09000 * 109.35052 * 61.14785 * 14 12 11 37 37 H 1.09000 * 109.44824 * 301.25163 * 14 12 11 38 38 H 1.08998 * 109.49772 * 178.75336 * 15 14 12 39 39 H 1.08994 * 109.49838 * 58.64905 * 15 14 12 40 40 H 1.08998 * 109.59198 * 294.84773 * 16 15 14 41 41 H 1.09004 * 109.70079 * 174.49026 * 16 15 14 42 42 H 0.97004 * 119.99616 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.58436 * 173.39865 * 26 17 16 44 44 H 1.08997 * 109.59076 * 293.67937 * 26 17 16 45 45 H 1.09005 * 109.46936 * 270.24084 * 28 27 2 46 46 H 1.09002 * 109.47196 * 30.23967 * 28 27 2 47 47 H 1.08999 * 109.47367 * 150.24063 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1650 1.1429 0.0000 4 7 3.4464 1.2032 -0.0005 5 6 4.2046 0.1168 -0.0005 6 8 5.5546 0.2267 -0.0016 7 6 3.5978 -1.1500 -0.0006 8 6 4.4079 -2.3866 0.0000 9 8 4.7405 -2.8948 1.0528 10 7 4.7776 -2.9505 -1.1670 11 6 5.5799 -4.1762 -1.1665 12 6 5.8606 -4.6026 -2.6088 13 1 6.3289 -3.7788 -3.1476 14 6 6.7991 -5.8118 -2.6139 15 6 7.1038 -6.2211 -4.0569 16 6 5.8002 -6.6180 -4.7568 17 7 4.8412 -5.5117 -4.6329 18 6 4.2350 -4.9863 -5.7428 19 1 4.7302 -5.0324 -6.7014 20 6 2.9839 -4.3944 -5.6356 21 7 2.5752 -3.5481 -6.5570 22 14 1.8805 -4.7990 -4.1836 23 1 2.0998 -3.8043 -3.1030 24 1 0.4600 -4.7568 -4.6145 25 1 2.2045 -6.1576 -3.6791 26 6 4.5445 -4.9804 -3.2956 27 6 2.1980 -1.2001 -0.0058 28 6 1.4672 -2.5180 -0.0130 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 5.9459 0.2586 -0.8853 33 1 4.5125 -2.5446 -2.0072 34 1 5.0339 -4.9676 -0.6530 35 1 6.5233 -3.9927 -0.6521 36 1 6.3211 -6.6422 -2.0943 37 1 7.7282 -5.5523 -2.1063 38 1 7.7896 -7.0682 -4.0577 39 1 7.5593 -5.3830 -4.5843 40 1 5.3900 -7.5115 -4.2863 41 1 5.9947 -6.8166 -5.8108 42 1 1.7008 -3.1347 -6.4823 43 1 3.9125 -4.0969 -3.3855 44 1 4.0298 -5.7395 -2.7067 45 1 1.2868 -2.8390 1.0130 46 1 0.5148 -2.4026 -0.5304 47 1 2.0714 -3.2658 -0.5266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023525557.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:18 Heat of formation + Delta-G solvation = -32.525170 kcal Electronic energy + Delta-G solvation = -30044.007081 eV Core-core repulsion = 26033.861612 eV Total energy + Delta-G solvation = -4010.145469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.72876 -40.87965 -39.58468 -38.97318 -36.36965 -36.13526 -34.87681 -33.89736 -32.83876 -32.08694 -29.88408 -29.11756 -27.51543 -27.13213 -25.35848 -24.10425 -23.87697 -22.47543 -21.93516 -20.86731 -20.17835 -19.46496 -18.84907 -18.69749 -17.65002 -17.30394 -17.00276 -16.39231 -15.97450 -15.81313 -15.74090 -15.45800 -15.06199 -14.99456 -14.78236 -14.57989 -14.50260 -14.23109 -14.02424 -13.94832 -13.67873 -13.65350 -13.39171 -13.36215 -13.09175 -12.99301 -12.56182 -12.39098 -12.20838 -12.11498 -11.83195 -11.69851 -11.58248 -11.33996 -11.26157 -11.14132 -10.68615 -10.63504 -10.60705 -10.34534 -8.92443 -8.16509 -5.48553 -0.80067 -0.51042 1.09762 1.22613 1.41518 1.49528 1.75376 1.97552 2.18598 2.39443 2.86435 3.03185 3.15653 3.18856 3.32252 3.47003 3.70815 3.80001 3.90312 3.95432 4.02115 4.23966 4.29845 4.41680 4.43022 4.47656 4.54921 4.58776 4.61227 4.68614 4.70645 4.74877 4.84457 4.87813 4.88458 4.97714 5.06226 5.11541 5.22042 5.23453 5.29334 5.30652 5.58726 5.86830 6.11098 6.12972 6.22058 6.77056 6.91979 7.35280 7.62384 8.02884 9.03243 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.004436 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.628501 B = 6310.191649 C = 7628.156987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.064 3.936 3 N -0.226 5.226 4 N -0.280 5.280 5 C 0.285 3.715 6 O -0.474 6.474 7 C -0.165 4.165 8 C 0.583 3.417 9 O -0.551 6.551 10 N -0.709 5.709 11 C 0.130 3.870 12 C -0.107 4.107 13 H 0.075 0.925 14 C -0.098 4.098 15 C -0.125 4.125 16 C 0.137 3.863 17 N -0.620 5.620 18 C -0.250 4.250 19 H 0.049 0.951 20 C -0.033 4.033 21 N -0.955 5.955 22 Si 0.942 3.058 23 H -0.257 1.257 24 H -0.313 1.313 25 H -0.271 1.271 26 C 0.130 3.870 27 C -0.026 4.026 28 C -0.131 4.131 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.426 0.574 33 H 0.408 0.592 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.032 0.968 41 H 0.050 0.950 42 H 0.261 0.739 43 H 0.051 0.949 44 H 0.028 0.972 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.915 0.940 14.020 14.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.082 4.082 3 N -0.070 5.070 4 N -0.131 5.131 5 C 0.098 3.902 6 O -0.283 6.283 7 C -0.180 4.180 8 C 0.367 3.633 9 O -0.429 6.429 10 N -0.359 5.359 11 C 0.007 3.993 12 C -0.127 4.127 13 H 0.093 0.907 14 C -0.136 4.136 15 C -0.164 4.164 16 C 0.012 3.988 17 N -0.344 5.344 18 C -0.380 4.380 19 H 0.066 0.934 20 C -0.228 4.228 21 N -0.601 5.601 22 Si 0.770 3.230 23 H -0.183 1.183 24 H -0.242 1.242 25 H -0.196 1.196 26 C 0.005 3.995 27 C -0.038 4.038 28 C -0.187 4.187 29 H 0.119 0.881 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.289 0.711 33 H 0.243 0.757 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.092 2.245 15.268 15.471 hybrid contribution -0.458 -1.154 -0.953 1.565 sum 0.633 1.091 14.315 14.371 Atomic orbital electron populations 1.20961 0.83635 1.06134 1.05403 1.23367 1.01278 0.88231 0.95362 1.72767 0.99954 1.25620 1.08701 1.72962 1.00245 1.26974 1.12925 1.20829 0.86696 0.88038 0.94599 1.84698 1.12333 1.95164 1.36083 1.21397 0.95516 0.95027 1.06024 1.17634 0.78866 0.82708 0.84135 1.90803 1.56230 1.63812 1.32064 1.46125 1.53864 1.27954 1.07971 1.21553 0.95704 0.85064 0.96979 1.21816 0.97522 0.99848 0.93537 0.90665 1.21380 0.99011 0.96301 0.96941 1.21883 0.97108 1.01558 0.95819 1.21180 0.89595 0.88955 0.99032 1.44468 1.49944 1.37842 1.02171 1.18871 0.98423 1.31689 0.89029 0.93351 1.25902 0.98310 0.98568 1.00052 1.69980 1.21008 1.30392 1.38743 0.85990 0.77358 0.79474 0.80139 1.18269 1.24240 1.19575 1.21399 0.95818 0.96618 0.85648 1.21465 0.91207 0.99207 0.91883 1.21182 1.01707 0.90407 1.05441 0.88100 0.87327 0.88595 0.71094 0.75684 0.91051 0.89520 0.91329 0.89643 0.89362 0.92939 0.94958 0.93132 0.92974 0.93073 0.95443 0.86968 0.86722 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 9.42 71.24 0.67 -0.73 16 2 C 0.06 1.45 6.86 42.61 0.29 1.74 16 3 N -0.23 -6.35 11.40 -47.73 -0.54 -6.90 16 4 N -0.28 -8.50 11.52 -169.57 -1.95 -10.46 16 5 C 0.29 8.03 7.88 85.14 0.67 8.70 16 6 O -0.47 -11.64 13.09 -87.39 -1.14 -12.78 16 7 C -0.16 -4.51 5.69 -19.75 -0.11 -4.62 16 8 C 0.58 16.70 5.62 86.78 0.49 17.19 16 9 O -0.55 -18.99 17.11 -3.88 -0.07 -19.05 16 10 N -0.71 -18.46 5.33 -466.00 -2.48 -20.95 16 11 C 0.13 3.20 5.08 86.38 0.44 3.63 16 12 C -0.11 -2.94 2.38 -10.71 -0.03 -2.96 16 13 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 14 C -0.10 -2.28 5.17 30.64 0.16 -2.13 16 15 C -0.12 -3.29 6.09 30.68 0.19 -3.10 16 16 C 0.14 4.79 6.52 86.36 0.56 5.36 16 17 N -0.62 -26.74 2.77 -699.11 -1.94 -28.67 16 18 C -0.25 -13.44 10.03 84.03 0.84 -12.59 16 19 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 20 C -0.03 -1.84 5.23 84.86 0.44 -1.40 16 21 N -0.96 -57.03 13.97 21.65 0.30 -56.73 16 22 Si 0.94 42.49 24.35 68.60 1.67 44.16 16 23 H -0.26 -10.07 6.62 99.48 0.66 -9.41 16 24 H -0.31 -14.64 7.11 99.48 0.71 -13.93 16 25 H -0.27 -12.06 6.64 99.48 0.66 -11.40 16 26 C 0.13 4.78 3.29 86.36 0.28 5.06 16 27 C -0.03 -0.62 5.96 -19.36 -0.12 -0.73 16 28 C -0.13 -2.49 8.92 71.24 0.64 -1.85 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.11 0.94 6.80 -2.39 -0.02 0.93 16 31 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.43 6.27 9.06 -74.05 -0.67 5.60 16 33 H 0.41 10.64 7.68 -92.71 -0.71 9.93 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.05 1.85 7.93 -2.38 -0.02 1.83 16 42 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.05 2.04 3.71 -2.39 -0.01 2.03 16 44 H 0.03 1.01 7.07 -2.39 -0.02 1.00 16 45 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.11 1.61 6.83 -2.39 -0.02 1.60 16 47 H 0.06 1.47 7.25 -2.39 -0.02 1.45 16 Total: -1.00 -74.81 376.27 -1.19 -76.00 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.46 Total: 23.80 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 5.42 Total: 11.57 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -6.61 Total: -123.70 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -1.21 Total: -31.84 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.67 Total: 44.16 kcal Total: -74.81 -1.19 -76.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023525557.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.474 kcal (2) G-P(sol) polarization free energy of solvation -74.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds