Wall clock time and date at job start Tue Mar 31 2020 19:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30520 * 119.70405 * 2 1 4 4 N 1.28267 * 122.98632 * 180.02562 * 3 2 1 5 5 C 1.46509 * 119.03024 * 180.02562 * 4 3 2 6 6 C 1.34685 * 121.93930 * 0.02562 * 4 3 2 7 7 O 1.21900 * 120.46608 * 180.02562 * 6 4 3 8 8 C 1.42321 * 119.06210 * 0.02562 * 6 4 3 9 9 C 1.47418 * 121.30036 * 180.02562 * 8 6 4 10 10 O 1.21607 * 119.99737 * 78.96499 * 9 8 6 11 11 N 1.34773 * 119.99825 * 258.97083 * 9 8 6 12 12 C 1.46497 * 120.00049 * 4.92221 * 11 9 8 13 13 C 1.46498 * 119.99986 * 184.92159 * 11 9 8 14 14 H 1.09008 * 110.64082 * 358.31454 * 13 11 9 15 15 C 1.55155 * 110.72223 * 234.97536 * 13 11 9 16 16 C 1.55127 * 101.48410 * 205.96811 * 15 13 11 17 17 N 1.47422 * 104.72492 * 37.29628 * 16 15 13 18 18 C 1.36936 * 125.65291 * 155.81243 * 17 16 15 19 19 H 1.08003 * 120.00644 * 190.99228 * 18 17 16 20 20 C 1.38819 * 119.99713 * 10.99844 * 18 17 16 21 21 N 1.31618 * 120.00250 * 34.08484 * 20 18 17 22 22 Si 1.86796 * 119.99860 * 214.09193 * 20 18 17 23 23 H 1.48500 * 109.47181 * 179.97438 * 22 20 18 24 24 H 1.48504 * 109.47153 * 299.99716 * 22 20 18 25 25 H 1.48503 * 109.47276 * 59.99961 * 22 20 18 26 26 C 1.47024 * 108.70379 * 335.55288 * 17 16 15 27 27 C 1.39323 * 117.40070 * 0.26803 * 8 6 4 28 28 C 1.50694 * 120.98983 * 179.72792 * 27 8 6 29 29 H 1.09000 * 109.47107 * 0.02562 * 1 2 3 30 30 H 1.09008 * 109.47216 * 119.99977 * 1 2 3 31 31 H 1.09003 * 109.47375 * 239.99662 * 1 2 3 32 32 H 1.09001 * 109.46867 * 269.97476 * 5 4 3 33 33 H 1.08991 * 109.47230 * 29.98203 * 5 4 3 34 34 H 1.09000 * 109.46941 * 149.98295 * 5 4 3 35 35 H 1.09003 * 109.47600 * 266.15583 * 12 11 9 36 36 H 1.08995 * 109.47314 * 26.15949 * 12 11 9 37 37 H 1.09002 * 109.47231 * 146.15837 * 12 11 9 38 38 H 1.08993 * 111.00584 * 324.20739 * 15 13 11 39 39 H 1.09003 * 111.00221 * 88.02250 * 15 13 11 40 40 H 1.09000 * 110.49923 * 278.45234 * 16 15 13 41 41 H 1.09004 * 110.34324 * 156.05965 * 16 15 13 42 42 H 0.97009 * 119.99459 * 359.11024 * 21 20 18 43 43 H 1.08998 * 109.88313 * 120.69966 * 26 17 16 44 44 H 1.08993 * 109.88272 * 241.71823 * 26 17 16 45 45 H 1.09000 * 109.47340 * 95.06372 * 28 27 8 46 46 H 1.08994 * 109.47221 * 215.06924 * 28 27 8 47 47 H 1.09000 * 109.47332 * 335.06906 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1537 1.1337 0.0000 4 7 3.4343 1.2071 -0.0005 5 6 4.0707 2.5268 0.0001 6 6 4.2110 0.1069 -0.0015 7 8 5.4258 0.2079 -0.0015 8 6 3.5935 -1.1754 -0.0027 9 6 4.3960 -2.4120 -0.0033 10 8 4.8957 -2.8130 1.0303 11 7 4.5760 -3.0979 -1.1494 12 6 4.0662 -2.5597 -2.4130 13 6 5.2813 -4.3818 -1.1316 14 1 5.6185 -4.6210 -0.1230 15 6 6.4736 -4.3670 -2.1243 16 6 6.6182 -5.8755 -2.4559 17 7 5.2348 -6.3827 -2.5044 18 6 4.8143 -7.4901 -3.1914 19 1 3.7584 -7.6820 -3.3125 20 6 5.7454 -8.3663 -3.7323 21 7 6.8858 -8.5806 -3.1112 22 14 5.3797 -9.2410 -5.3418 23 1 6.5256 -10.1142 -5.7021 24 1 4.1557 -10.0678 -5.1889 25 1 5.1675 -8.2360 -6.4143 26 6 4.3824 -5.5063 -1.6877 27 6 2.2009 -1.2163 -0.0085 28 6 1.4633 -2.5304 -0.0162 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5139 -0.8900 31 1 -0.3634 -0.5139 0.8900 32 1 4.2285 2.8545 -1.0274 33 1 3.4271 3.2403 0.5144 34 1 5.0302 2.4671 0.5138 35 1 3.0746 -2.9679 -2.6082 36 1 4.0054 -1.4734 -2.3470 37 1 4.7395 -2.8372 -3.2240 38 1 6.2323 -3.7889 -3.0162 39 1 7.3755 -3.9851 -1.6459 40 1 7.1821 -6.3857 -1.6750 41 1 7.1041 -6.0060 -3.4228 42 1 7.0811 -8.1164 -2.2820 43 1 3.5922 -5.0783 -2.3045 44 1 3.9452 -6.0746 -0.8669 45 1 1.2022 -2.8066 1.0054 46 1 0.5544 -2.4334 -0.6099 47 1 2.0998 -3.3018 -0.4496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033314775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:24 Heat of formation + Delta-G solvation = 6.389043 kcal Electronic energy + Delta-G solvation = -29992.264693 eV Core-core repulsion = 25983.806670 eV Total energy + Delta-G solvation = -4008.458022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.34350 -41.30876 -39.36747 -39.15705 -37.09049 -36.50273 -34.34992 -33.42991 -31.63848 -31.08373 -29.56232 -29.12695 -28.09302 -27.33747 -26.46425 -25.43389 -23.40717 -22.42358 -22.22792 -20.57432 -19.75901 -19.61968 -18.90858 -18.22328 -17.76695 -17.55627 -16.95003 -16.30251 -16.23634 -15.92760 -15.56068 -15.14948 -15.11932 -14.92039 -14.68967 -14.63365 -14.41105 -14.12284 -13.92847 -13.76399 -13.71528 -13.61760 -13.50371 -13.34419 -12.90944 -12.85128 -12.66995 -12.62640 -12.52594 -12.45916 -12.38978 -11.88900 -11.80057 -11.69267 -11.57494 -11.01943 -10.85691 -10.43121 -9.89693 -9.61843 -9.06008 -8.45461 -5.29276 -0.92677 0.37964 0.86989 1.35595 1.58626 1.64041 1.68196 1.86728 2.07728 2.63498 2.83416 3.07418 3.15695 3.28143 3.47803 3.57730 3.60608 3.74466 3.91690 3.99451 4.05244 4.23941 4.27300 4.28125 4.30893 4.33978 4.43151 4.43829 4.55740 4.63120 4.63666 4.74016 4.75780 4.79531 4.84172 4.88563 4.93099 4.96857 5.03850 5.07201 5.13400 5.32000 5.41828 5.64666 6.08591 6.27335 6.33583 6.78343 6.83756 6.95758 7.68771 8.25972 8.95060 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020593 B = 0.002927 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.364644 B = 9563.751229 C =10177.423832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.068 3.932 3 N -0.211 5.211 4 N -0.342 5.342 5 C 0.075 3.925 6 C 0.488 3.512 7 O -0.570 6.570 8 C -0.246 4.246 9 C 0.589 3.411 10 O -0.573 6.573 11 N -0.586 5.586 12 C 0.077 3.923 13 C 0.141 3.859 14 H 0.085 0.915 15 C -0.127 4.127 16 C 0.151 3.849 17 N -0.620 5.620 18 C -0.355 4.355 19 H 0.069 0.931 20 C -0.078 4.078 21 N -0.941 5.941 22 Si 1.120 2.880 23 H -0.295 1.295 24 H -0.272 1.272 25 H -0.277 1.277 26 C 0.137 3.863 27 C 0.039 3.961 28 C -0.136 4.136 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.003 0.997 41 H 0.032 0.968 42 H 0.254 0.746 43 H 0.053 0.947 44 H 0.014 0.986 45 H 0.109 0.891 46 H 0.134 0.866 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.224 24.265 3.227 30.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 N -0.036 5.036 4 N -0.160 5.160 5 C -0.064 4.064 6 C 0.287 3.713 7 O -0.451 6.451 8 C -0.261 4.261 9 C 0.377 3.623 10 O -0.452 6.452 11 N -0.317 5.317 12 C -0.065 4.065 13 C 0.036 3.964 14 H 0.103 0.897 15 C -0.166 4.166 16 C 0.025 3.975 17 N -0.348 5.348 18 C -0.483 4.483 19 H 0.087 0.913 20 C -0.274 4.274 21 N -0.583 5.583 22 Si 0.944 3.056 23 H -0.221 1.221 24 H -0.198 1.198 25 H -0.203 1.203 26 C 0.011 3.989 27 C 0.032 3.968 28 C -0.192 4.192 29 H 0.111 0.889 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.143 0.857 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.021 0.979 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.032 0.968 45 H 0.127 0.873 46 H 0.152 0.848 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.783 23.941 2.604 29.353 hybrid contribution 0.695 -0.075 1.581 1.729 sum -16.089 23.866 4.186 29.085 Atomic orbital electron populations 1.20847 0.82074 1.05990 1.05673 1.22418 1.00002 0.85226 1.02484 1.70812 0.94039 1.29268 1.09459 1.46731 1.02389 1.10020 1.56896 1.22445 0.99364 0.78730 1.05845 1.17746 0.87737 0.85532 0.80326 1.90947 1.13908 1.86549 1.53701 1.21122 0.95323 0.93041 1.16565 1.17747 0.78868 0.82633 0.83037 1.90769 1.50566 1.70133 1.33759 1.47692 1.55668 1.20237 1.08059 1.21955 1.01008 0.98922 0.84603 1.21853 0.92310 0.82340 0.99867 0.89721 1.23087 0.97809 0.96290 0.99452 1.21405 0.87097 0.91385 0.97610 1.44803 1.04496 1.28854 1.56611 1.19959 0.93941 1.03425 1.30953 0.91317 1.27208 0.95136 0.98704 1.06334 1.70965 1.29905 1.39147 1.18276 0.82784 0.75511 0.75081 0.72238 1.22123 1.19779 1.20350 1.21548 0.93620 0.90507 0.93194 1.21853 0.90543 0.99357 0.85059 1.21287 1.01935 0.90213 1.05784 0.88898 0.87219 0.87796 0.88412 0.85683 0.89425 0.89706 0.90914 0.90113 0.89211 0.90386 0.97933 0.94923 0.93541 0.92924 0.96765 0.87300 0.84811 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.27 9.10 71.23 0.65 0.37 16 2 C 0.07 0.88 6.87 43.19 0.30 1.18 16 3 N -0.21 -3.42 10.74 -47.43 -0.51 -3.93 16 4 N -0.34 -7.13 3.62 -492.99 -1.78 -8.92 16 5 C 0.07 1.03 10.58 127.77 1.35 2.38 16 6 C 0.49 14.43 7.48 85.27 0.64 15.06 16 7 O -0.57 -21.50 16.18 -4.99 -0.08 -21.58 16 8 C -0.25 -6.86 3.81 -19.58 -0.07 -6.93 16 9 C 0.59 20.79 5.51 86.66 0.48 21.27 16 10 O -0.57 -25.32 16.49 -4.05 -0.07 -25.38 16 11 N -0.59 -18.99 2.52 -819.84 -2.07 -21.05 16 12 C 0.08 1.88 9.13 127.77 1.17 3.04 16 13 C 0.14 5.41 3.36 46.18 0.16 5.57 16 14 H 0.08 3.66 7.00 -2.38 -0.02 3.64 16 15 C -0.13 -4.93 6.63 32.06 0.21 -4.72 16 16 C 0.15 7.39 5.29 86.93 0.46 7.85 16 17 N -0.62 -31.96 3.33 -691.54 -2.31 -34.27 16 18 C -0.36 -20.10 9.99 84.04 0.84 -19.26 16 19 H 0.07 3.80 8.02 -2.91 -0.02 3.78 16 20 C -0.08 -4.47 4.95 84.86 0.42 -4.05 16 21 N -0.94 -58.81 13.02 21.65 0.28 -58.53 16 22 Si 1.12 50.81 30.03 68.60 2.06 52.87 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 26 C 0.14 5.78 6.88 86.73 0.60 6.38 16 27 C 0.04 0.70 5.95 -19.17 -0.11 0.59 16 28 C -0.14 -1.75 9.30 71.23 0.66 -1.08 16 29 H 0.09 0.19 8.10 -2.39 -0.02 0.17 16 30 H 0.11 -0.08 7.57 -2.38 -0.02 -0.10 16 31 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.12 0.94 8.13 -2.39 -0.02 0.92 16 34 H 0.09 1.46 7.36 -2.39 -0.02 1.44 16 35 H 0.08 1.68 7.70 -2.39 -0.02 1.66 16 36 H 0.07 1.63 6.82 -2.39 -0.02 1.62 16 37 H 0.08 2.04 6.07 -2.39 -0.01 2.02 16 38 H 0.09 3.14 6.07 -2.39 -0.01 3.13 16 39 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.00 0.16 6.96 -2.39 -0.02 0.14 16 41 H 0.03 1.72 7.77 -2.39 -0.02 1.70 16 42 H 0.25 16.26 6.05 -92.70 -0.56 15.70 16 43 H 0.05 2.00 6.84 -2.39 -0.02 1.98 16 44 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.13 0.60 6.99 -2.39 -0.02 0.58 16 47 H 0.06 1.13 6.64 -2.39 -0.02 1.12 16 Total: -1.00 -87.07 376.90 4.47 -82.60 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.20 Total: 10.54 kcal Atomic # 6 Polarization: 19.91 SS G_CDS: 7.74 Total: 27.65 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -6.38 Total: -126.70 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -0.15 Total: -46.96 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 2.06 Total: 52.87 kcal Total: -87.07 4.47 -82.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033314775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.989 kcal (2) G-P(sol) polarization free energy of solvation -87.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds