Wall clock time and date at job start Tue Mar 31 2020 19:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31884 * 119.93312 * 2 1 4 4 N 1.28274 * 122.62743 * 180.02562 * 3 2 1 5 5 C 1.32491 * 122.21733 * 359.72421 * 4 3 2 6 6 O 1.35448 * 120.25539 * 180.29074 * 5 4 3 7 7 C 1.40454 * 119.48964 * 0.53410 * 5 4 3 8 8 C 1.47830 * 121.17510 * 179.76151 * 7 5 4 9 9 O 1.21557 * 120.00118 * 269.71946 * 8 7 5 10 10 N 1.34778 * 120.00013 * 89.71618 * 8 7 5 11 11 C 1.46927 * 120.62805 * 359.97438 * 10 8 7 12 12 C 1.53193 * 108.77663 * 233.63128 * 11 10 8 13 13 C 1.53046 * 109.31028 * 305.36644 * 12 11 10 14 14 H 1.08993 * 109.46296 * 301.34732 * 13 12 11 15 15 N 1.46504 * 109.45842 * 181.38506 * 13 12 11 16 16 C 1.36933 * 119.99987 * 84.93087 * 15 13 12 17 17 H 1.07998 * 119.99830 * 0.02562 * 16 15 13 18 18 C 1.38811 * 120.00030 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99968 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00098 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47307 * 59.99762 * 20 18 16 22 22 H 1.48500 * 109.47513 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46796 * 299.99976 * 20 18 16 24 24 C 1.53046 * 109.53579 * 61.36644 * 13 12 11 25 25 H 1.09004 * 109.49895 * 58.58445 * 24 13 12 26 26 C 1.52998 * 109.49545 * 178.64917 * 24 13 12 27 27 C 1.46919 * 120.63015 * 180.02562 * 10 8 7 28 28 C 1.38482 * 119.93268 * 180.02562 * 2 1 3 29 29 C 1.50695 * 121.06136 * 0.02562 * 28 2 1 30 30 H 1.08998 * 109.47657 * 269.98217 * 1 2 3 31 31 H 1.09004 * 109.47083 * 29.98350 * 1 2 3 32 32 H 1.09004 * 109.47009 * 149.97845 * 1 2 3 33 33 H 0.96700 * 113.99611 * 270.24558 * 6 5 4 34 34 H 1.09000 * 109.58699 * 353.41886 * 11 10 8 35 35 H 1.08997 * 109.58189 * 113.70088 * 11 10 8 36 36 H 1.09001 * 109.49998 * 185.42005 * 12 11 10 37 37 H 1.08998 * 109.50010 * 65.31705 * 12 11 10 38 38 H 0.97002 * 119.99384 * 264.93462 * 15 13 12 39 39 H 0.96997 * 119.99966 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.47430 * 59.99745 * 26 24 13 41 41 H 1.09002 * 109.47514 * 179.97438 * 26 24 13 42 42 H 1.09007 * 109.47298 * 299.99832 * 26 24 13 43 43 H 1.09002 * 109.59216 * 6.57787 * 27 10 8 44 44 H 1.09004 * 109.70105 * 246.22477 * 27 10 8 45 45 H 1.08996 * 109.47048 * 269.98001 * 29 28 2 46 46 H 1.09005 * 109.47126 * 29.97276 * 29 28 2 47 47 H 1.08997 * 109.47121 * 149.97270 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1650 1.1429 0.0000 4 7 3.4464 1.2032 -0.0005 5 6 4.2046 0.1168 0.0044 6 8 5.5546 0.2267 0.0096 7 6 3.5978 -1.1499 -0.0011 8 6 4.4079 -2.3865 -0.0012 9 8 4.7405 -2.8951 -1.0540 10 7 4.7776 -2.9500 1.1659 11 6 4.3837 -2.3467 2.4464 12 6 5.6394 -2.1316 3.2971 13 6 6.3925 -3.4572 3.4320 14 1 5.7402 -4.2004 3.8904 15 7 7.5765 -3.2624 4.2726 16 6 7.4679 -3.3347 5.6357 17 1 6.5095 -3.5356 6.0911 18 6 8.5899 -3.1507 6.4321 19 7 9.7580 -2.9063 5.8770 20 14 8.4418 -3.2499 8.2915 21 1 7.9446 -4.5949 8.6774 22 1 9.7732 -3.0184 8.9072 23 1 7.4898 -2.2146 8.7682 24 6 6.8249 -3.9434 2.0468 25 1 7.4573 -3.1896 1.5776 26 6 7.6067 -5.2512 2.1857 27 6 5.5831 -4.1786 1.1819 28 6 2.1979 -1.2001 -0.0005 29 6 1.4672 -2.5180 -0.0017 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8898 -0.5142 33 1 5.9498 0.2609 -0.8723 34 1 3.8971 -1.3885 2.2645 35 1 3.6962 -3.0126 2.9678 36 1 5.3522 -1.7742 4.2860 37 1 6.2830 -1.3950 2.8162 38 1 8.4374 -3.0823 3.8634 39 1 10.5421 -2.7781 6.4334 40 1 6.9737 -6.0050 2.6539 41 1 7.9142 -5.5974 1.1990 42 1 8.4891 -5.0832 2.8034 43 1 5.8878 -4.4292 0.1658 44 1 4.9968 -4.9970 1.5998 45 1 1.2910 -2.8366 1.0256 46 1 0.5126 -2.4038 -0.5154 47 1 2.0694 -3.2669 -0.5162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036141391.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:56 Heat of formation + Delta-G solvation = -33.943097 kcal Electronic energy + Delta-G solvation = -30040.906728 eV Core-core repulsion = 26030.699773 eV Total energy + Delta-G solvation = -4010.206955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.75874 -41.14685 -39.18593 -38.89296 -36.30515 -36.03349 -34.59101 -33.62859 -33.08645 -31.11366 -29.81464 -29.06605 -27.83834 -26.87980 -25.37936 -24.19248 -23.78549 -23.15453 -21.48616 -20.61499 -20.12554 -19.23803 -19.00272 -18.58656 -17.53697 -17.07092 -16.78209 -16.07416 -15.97569 -15.76336 -15.53897 -15.48954 -15.03589 -14.87311 -14.62155 -14.36235 -14.19007 -13.99007 -13.92374 -13.70937 -13.55696 -13.31549 -13.24843 -12.99541 -12.83432 -12.79583 -12.78278 -12.52991 -12.28587 -12.21187 -12.12694 -11.86379 -11.72889 -11.61325 -11.19970 -11.02232 -10.85502 -10.57554 -10.54143 -9.86154 -8.98481 -7.91676 -5.19610 -0.71579 -0.43948 1.12114 1.47915 1.50169 1.55979 1.69082 2.01576 2.29437 2.57339 2.89926 2.99618 3.26529 3.41072 3.54447 3.71830 3.76139 3.79927 3.89732 3.99901 4.07757 4.23174 4.29302 4.30254 4.44669 4.54382 4.59268 4.65290 4.67471 4.71330 4.74291 4.77031 4.81382 4.89898 4.96317 4.98118 5.04837 5.14871 5.24449 5.34853 5.35754 5.46311 5.54079 5.57985 6.09804 6.22712 6.29415 6.75912 7.35962 7.43300 8.11883 8.34816 9.31742 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015343 B = 0.003211 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.523215 B = 8717.340686 C = 9280.239444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.064 3.936 3 N -0.232 5.232 4 N -0.285 5.285 5 C 0.278 3.722 6 O -0.481 6.481 7 C -0.155 4.155 8 C 0.581 3.419 9 O -0.560 6.560 10 N -0.586 5.586 11 C 0.122 3.878 12 C -0.142 4.142 13 C 0.182 3.818 14 H 0.056 0.944 15 N -0.731 5.731 16 C -0.233 4.233 17 H 0.079 0.921 18 C -0.076 4.076 19 N -0.971 5.971 20 Si 0.968 3.032 21 H -0.276 1.276 22 H -0.301 1.301 23 H -0.280 1.280 24 C -0.101 4.101 25 H 0.049 0.951 26 C -0.129 4.129 27 C 0.127 3.873 28 C -0.022 4.022 29 C -0.125 4.125 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.423 0.577 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.370 0.630 39 H 0.248 0.752 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.112 0.888 46 H 0.122 0.878 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.130 -0.971 -14.455 26.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.082 4.082 3 N -0.076 5.076 4 N -0.136 5.136 5 C 0.091 3.909 6 O -0.289 6.289 7 C -0.170 4.170 8 C 0.368 3.632 9 O -0.439 6.439 10 N -0.316 5.316 11 C -0.001 4.001 12 C -0.183 4.183 13 C 0.074 3.926 14 H 0.074 0.926 15 N -0.370 5.370 16 C -0.365 4.365 17 H 0.097 0.903 18 C -0.268 4.268 19 N -0.622 5.622 20 Si 0.798 3.202 21 H -0.202 1.202 22 H -0.228 1.228 23 H -0.206 1.206 24 C -0.121 4.121 25 H 0.068 0.932 26 C -0.186 4.186 27 C 0.005 3.995 28 C -0.034 4.034 29 C -0.181 4.181 30 H 0.124 0.876 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.285 0.715 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.202 0.798 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.130 0.870 46 H 0.140 0.860 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.003 0.334 -14.223 26.202 hybrid contribution 1.706 -0.749 0.586 1.953 sum -20.297 -0.415 -13.637 24.457 Atomic orbital electron populations 1.20979 0.83311 1.05993 1.05587 1.23433 1.01344 0.88219 0.95225 1.72767 0.99742 1.26127 1.08965 1.72996 1.00430 1.27082 1.13061 1.20956 0.86437 0.88513 0.94983 1.84731 1.13080 1.95213 1.35879 1.21310 0.95905 0.94331 1.05489 1.17766 0.79067 0.82646 0.83740 1.90796 1.57320 1.64186 1.31630 1.48096 1.51313 1.26611 1.05555 1.21769 0.96815 0.98599 0.82881 1.22476 0.96523 1.00168 0.99111 1.20410 0.88504 0.93856 0.89862 0.92579 1.42583 1.06553 1.85315 1.02520 1.19570 0.94316 1.38646 0.83922 0.90315 1.25501 0.95479 1.03856 1.02008 1.69816 0.99368 1.57695 1.35344 0.85288 0.75953 0.78141 0.80845 1.20171 1.22771 1.20646 1.21610 0.96615 0.98425 0.95466 0.93231 1.21567 0.99889 0.95782 1.01411 1.21764 0.90930 0.85403 1.01419 1.21517 0.90520 0.99637 0.91742 1.21190 1.01636 0.89686 1.05638 0.87628 0.89305 0.86899 0.71515 0.91120 0.87933 0.91810 0.94429 0.79844 0.94280 0.91811 0.91482 0.94235 0.89020 0.88317 0.86987 0.85997 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 9.81 71.23 0.70 -0.03 16 2 C 0.06 1.11 6.86 42.61 0.29 1.40 16 3 N -0.23 -5.78 11.40 -47.73 -0.54 -6.32 16 4 N -0.28 -8.28 11.52 -169.56 -1.95 -10.24 16 5 C 0.28 7.65 7.74 85.13 0.66 8.31 16 6 O -0.48 -13.21 13.09 -87.45 -1.14 -14.35 16 7 C -0.16 -3.75 3.69 -19.75 -0.07 -3.83 16 8 C 0.58 15.48 5.50 86.78 0.48 15.96 16 9 O -0.56 -17.70 16.52 -3.89 -0.06 -17.76 16 10 N -0.59 -14.77 2.97 -822.42 -2.44 -17.21 16 11 C 0.12 3.02 6.34 86.36 0.55 3.57 16 12 C -0.14 -4.80 5.66 30.67 0.17 -4.63 16 13 C 0.18 6.64 2.19 45.02 0.10 6.74 16 14 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 15 N -0.73 -35.36 4.41 -322.80 -1.42 -36.78 16 16 C -0.23 -12.40 9.93 84.03 0.83 -11.57 16 17 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 18 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 19 N -0.97 -59.28 13.06 21.65 0.28 -59.00 16 20 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 C -0.10 -3.16 2.46 -10.73 -0.03 -3.19 16 25 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 26 C -0.13 -3.91 9.03 71.98 0.65 -3.26 16 27 C 0.13 3.15 5.71 86.35 0.49 3.65 16 28 C -0.02 -0.39 5.96 -19.36 -0.12 -0.51 16 29 C -0.13 -1.22 9.32 71.23 0.66 -0.55 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 0.17 6.04 -2.39 -0.01 0.16 16 33 H 0.42 7.87 9.06 -74.06 -0.67 7.20 16 34 H 0.07 1.74 6.22 -2.39 -0.01 1.73 16 35 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.37 19.87 7.50 -92.71 -0.70 19.17 16 39 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.04 1.49 7.36 -2.38 -0.02 1.47 16 43 H 0.09 2.35 7.00 -2.39 -0.02 2.33 16 44 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.12 0.39 6.07 -2.38 -0.01 0.38 16 47 H 0.07 0.92 7.24 -2.39 -0.02 0.90 16 Total: -1.00 -75.63 381.68 0.23 -75.40 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -0.35 Total: 30.49 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 5.84 Total: 8.22 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -6.08 Total: -129.55 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -1.21 Total: -32.11 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -75.63 0.23 -75.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036141391.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.456 kcal (2) G-P(sol) polarization free energy of solvation -75.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds