Wall clock time and date at job start Tue Mar 31 2020 19:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31880 * 119.93526 * 2 1 4 4 N 1.28276 * 122.62752 * 179.75480 * 3 2 1 5 5 C 1.32494 * 122.21418 * 0.49778 * 4 3 2 6 6 O 1.35444 * 120.25077 * 179.76776 * 5 4 3 7 7 C 1.40453 * 119.49430 * 359.49101 * 5 4 3 8 8 C 1.47820 * 121.17684 * 180.27866 * 7 5 4 9 9 O 1.21558 * 120.00004 * 89.99527 * 8 7 5 10 10 N 1.34777 * 119.99997 * 269.99884 * 8 7 5 11 11 C 1.46931 * 120.62815 * 359.72130 * 10 8 7 12 12 C 1.53624 * 108.54089 * 126.37024 * 11 10 8 13 13 C 1.53040 * 109.24307 * 54.85666 * 12 11 10 14 14 H 1.09003 * 109.44924 * 178.49813 * 13 12 11 15 15 N 1.46502 * 109.46246 * 58.53180 * 13 12 11 16 16 C 1.36935 * 120.00021 * 84.92680 * 15 13 12 17 17 H 1.07996 * 120.00089 * 0.02562 * 16 15 13 18 18 C 1.38814 * 119.99612 * 179.97438 * 16 15 13 19 19 N 1.31613 * 120.00215 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99698 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47248 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47252 * 120.00481 * 20 18 16 23 23 H 1.48511 * 109.46608 * 239.99867 * 20 18 16 24 24 C 1.53045 * 109.53666 * 298.50721 * 13 12 11 25 25 H 1.08998 * 109.52458 * 301.40129 * 24 13 12 26 26 C 1.52995 * 109.49379 * 181.31804 * 24 13 12 27 27 C 1.46923 * 120.63405 * 179.97438 * 10 8 7 28 28 C 1.38484 * 119.93193 * 179.97438 * 2 1 3 29 29 C 1.50700 * 121.05664 * 359.97438 * 28 2 1 30 30 H 1.08998 * 109.47121 * 270.02766 * 1 2 3 31 31 H 1.09002 * 109.46994 * 30.02610 * 1 2 3 32 32 H 1.08997 * 109.47128 * 150.02492 * 1 2 3 33 33 H 0.96700 * 114.00141 * 269.72119 * 6 5 4 34 34 H 1.09003 * 109.58075 * 246.20154 * 11 10 8 35 35 H 1.08992 * 109.58599 * 6.62540 * 11 10 8 36 36 H 1.08997 * 109.63490 * 294.85989 * 12 11 10 37 37 H 1.08999 * 109.45207 * 174.73835 * 12 11 10 38 38 H 0.96998 * 119.99512 * 264.93520 * 15 13 12 39 39 H 0.97006 * 120.00122 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.47709 * 300.16139 * 26 24 13 41 41 H 1.09006 * 109.47500 * 60.16624 * 26 24 13 42 42 H 1.09000 * 109.46801 * 180.16174 * 26 24 13 43 43 H 1.09003 * 109.58713 * 353.37693 * 27 10 8 44 44 H 1.09001 * 109.58591 * 113.65038 * 27 10 8 45 45 H 1.08994 * 109.47222 * 270.02619 * 29 28 2 46 46 H 1.09005 * 109.47074 * 30.02202 * 29 28 2 47 47 H 1.08997 * 109.47032 * 150.02352 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1651 1.1429 0.0000 4 7 3.4464 1.2031 0.0046 5 6 4.2046 0.1166 0.0000 6 8 5.5546 0.2265 0.0004 7 6 3.5978 -1.1501 0.0006 8 6 4.4078 -2.3866 0.0017 9 8 4.7404 -2.8943 1.0549 10 7 4.7775 -2.9511 -1.1650 11 6 4.3779 -2.3525 -2.4460 12 6 5.6378 -2.1355 -3.2978 13 6 6.3907 -3.4611 -3.4316 14 1 7.2713 -3.3168 -4.0577 15 7 5.5136 -4.4608 -4.0460 16 6 5.4071 -4.5329 -5.4093 17 1 5.9700 -3.8531 -6.0316 18 6 4.5763 -5.4805 -5.9914 19 7 3.8907 -6.3093 -5.2330 20 14 4.4316 -5.5793 -7.8512 21 1 5.2976 -4.5443 -8.4708 22 1 4.8611 -6.9246 -8.3103 23 1 3.0202 -5.3472 -8.2508 24 6 6.8242 -3.9456 -2.0461 25 1 7.4571 -3.1917 -1.5781 26 6 7.6051 -5.2540 -2.1840 27 6 5.5829 -4.1798 -1.1801 28 6 2.1980 -1.2001 0.0005 29 6 1.4671 -2.5180 0.0017 30 1 -0.3633 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8902 -0.5134 33 1 5.9470 0.2579 -0.8828 34 1 3.6936 -3.0235 -2.9651 35 1 3.8881 -1.3958 -2.2652 36 1 6.2816 -1.3982 -2.8183 37 1 5.3503 -1.7789 -4.2869 38 1 5.0082 -5.0715 -3.4870 39 1 3.3104 -6.9717 -5.6398 40 1 6.9722 -6.0073 -2.6531 41 1 8.4885 -5.0867 -2.8003 42 1 7.9111 -5.6002 -1.1968 43 1 5.8883 -4.4291 -0.1639 44 1 4.9941 -4.9976 -1.5956 45 1 1.2909 -2.8349 1.0296 46 1 0.5125 -2.4046 -0.5122 47 1 2.0692 -3.2678 -0.5115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036141394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:05 Heat of formation + Delta-G solvation = -6.197222 kcal Electronic energy + Delta-G solvation = -30566.535609 eV Core-core repulsion = 26557.531806 eV Total energy + Delta-G solvation = -4009.003804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74766 -39.96456 -38.02844 -37.80727 -35.16742 -34.42193 -33.17538 -32.53160 -31.55591 -29.31985 -28.96809 -28.24227 -26.65265 -25.44876 -23.93712 -23.51436 -22.86290 -21.82858 -20.14769 -19.14097 -18.72092 -18.02408 -17.52838 -17.17409 -16.50155 -15.89398 -15.11662 -15.04151 -14.74484 -14.54581 -14.32949 -14.10408 -13.73449 -13.71025 -13.43219 -13.38867 -13.21496 -12.99816 -12.91036 -12.64206 -12.38724 -12.36279 -12.18794 -11.75476 -11.52706 -11.38725 -11.34584 -11.01208 -10.94084 -10.66139 -10.62756 -10.42169 -10.24698 -10.01130 -9.95345 -9.67483 -9.65013 -9.50203 -9.05178 -8.48090 -7.09796 -5.89904 -3.18793 0.28412 0.48776 2.37285 2.83936 2.98846 3.22966 3.33960 3.40878 3.42550 3.82916 4.07887 4.14968 4.42295 4.48154 4.64280 4.91517 5.00014 5.03551 5.15800 5.16633 5.22187 5.30536 5.31363 5.43798 5.45240 5.45990 5.58365 5.60422 5.62513 5.70662 5.78409 5.91283 5.92585 5.96113 6.07546 6.16403 6.23390 6.36855 6.43939 6.52262 6.60961 6.76553 6.86011 7.05723 7.38246 7.59540 8.02145 8.28404 8.39853 9.40636 9.95616 10.30705 11.32399 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012866 B = 0.003908 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.819612 B = 7162.955612 C = 8041.992067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.060 3.940 3 N -0.209 5.209 4 N -0.254 5.254 5 C 0.285 3.715 6 O -0.465 6.465 7 C -0.132 4.132 8 C 0.570 3.430 9 O -0.528 6.528 10 N -0.589 5.589 11 C 0.114 3.886 12 C -0.149 4.149 13 C 0.179 3.821 14 H 0.054 0.946 15 N -0.718 5.718 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.009 4.009 19 N -0.931 5.931 20 Si 0.903 3.097 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.108 4.108 25 H 0.068 0.932 26 C -0.137 4.137 27 C 0.119 3.881 28 C -0.033 4.033 29 C -0.126 4.126 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.407 0.593 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.195 9.131 9.154 13.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.085 4.085 3 N -0.054 5.054 4 N -0.106 5.106 5 C 0.099 3.901 6 O -0.271 6.271 7 C -0.147 4.147 8 C 0.355 3.645 9 O -0.405 6.405 10 N -0.321 5.321 11 C -0.008 4.008 12 C -0.191 4.191 13 C 0.068 3.932 14 H 0.072 0.928 15 N -0.361 5.361 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.206 4.206 19 N -0.580 5.580 20 Si 0.735 3.265 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.128 4.128 25 H 0.086 0.914 26 C -0.195 4.195 27 C -0.003 4.003 28 C -0.044 4.044 29 C -0.183 4.183 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.266 0.734 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.986 10.457 10.104 14.844 hybrid contribution 0.013 -1.674 -1.472 2.229 sum -2.972 8.783 8.632 12.669 Atomic orbital electron populations 1.20758 0.86703 1.04574 1.03933 1.22757 0.99405 0.89220 0.97151 1.72825 1.00100 1.24319 1.08161 1.73024 0.99559 1.26327 1.11698 1.20799 0.86258 0.88152 0.94927 1.84749 1.12948 1.95190 1.34184 1.21333 0.94731 0.95615 1.03068 1.17675 0.79685 0.82852 0.84306 1.90807 1.55711 1.63103 1.30886 1.48125 1.51665 1.26845 1.05417 1.21848 0.98429 0.97562 0.83004 1.22631 0.96495 1.00349 0.99592 1.20211 0.93193 0.88376 0.91389 0.92834 1.42476 1.51539 1.37949 1.04090 1.19256 1.21219 1.13679 0.82913 0.91164 1.24694 0.99807 0.98496 0.97560 1.69648 1.32123 1.22560 1.33643 0.86182 0.77300 0.77359 0.85693 1.20610 1.21894 1.21945 1.21704 0.95691 0.98630 0.96785 0.91399 1.21665 1.00147 0.97173 1.00538 1.21748 0.91994 0.85291 1.01265 1.21110 0.91570 0.98034 0.93703 1.21027 1.01022 0.92047 1.04170 0.89515 0.89576 0.89589 0.73396 0.89006 0.92366 0.93385 0.90462 0.78113 0.93514 0.90975 0.92660 0.93654 0.89498 0.90176 0.89035 0.89131 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 9.81 36.00 0.35 -0.38 16 2 C 0.06 0.68 6.86 -82.48 -0.57 0.11 16 3 N -0.21 -2.87 11.40 33.56 0.38 -2.49 16 4 N -0.25 -3.79 11.53 30.73 0.35 -3.44 16 5 C 0.28 4.06 7.76 -16.43 -0.13 3.93 16 6 O -0.46 -6.06 13.09 -18.03 -0.24 -6.30 16 7 C -0.13 -1.86 3.68 -104.46 -0.38 -2.25 16 8 C 0.57 8.92 5.50 -12.34 -0.07 8.85 16 9 O -0.53 -9.92 16.52 5.32 0.09 -9.83 16 10 N -0.59 -8.71 2.97 -173.65 -0.52 -9.22 16 11 C 0.11 1.65 6.11 -3.48 -0.02 1.63 16 12 C -0.15 -2.20 5.79 -26.39 -0.15 -2.35 16 13 C 0.18 3.03 2.53 -67.89 -0.17 2.86 16 14 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 15 N -0.72 -15.30 3.63 -53.38 -0.19 -15.49 16 16 C -0.24 -5.91 9.93 -15.06 -0.15 -6.06 16 17 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.93 -25.80 13.06 55.49 0.72 -25.07 16 20 Si 0.90 20.96 29.55 -169.99 -5.02 15.93 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 C -0.11 -1.61 2.67 -90.52 -0.24 -1.85 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 26 C -0.14 -2.04 9.05 37.16 0.34 -1.70 16 27 C 0.12 1.83 5.41 -3.74 -0.02 1.81 16 28 C -0.03 -0.39 5.96 -103.84 -0.62 -1.01 16 29 C -0.13 -1.24 9.32 36.01 0.34 -0.91 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.48 6.04 -51.93 -0.31 0.16 16 33 H 0.41 3.50 9.06 45.56 0.41 3.91 16 34 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 35 H 0.06 0.77 6.24 -51.93 -0.32 0.44 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.38 8.78 5.93 -40.82 -0.24 8.53 16 39 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.07 1.25 7.53 -51.93 -0.39 0.86 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 44 H 0.08 1.35 6.65 -51.93 -0.35 1.01 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 0.66 6.07 -51.93 -0.32 0.34 16 47 H 0.08 0.96 7.24 -51.93 -0.38 0.58 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -31.38 377.80 -6.33 -37.71 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -6.01 Total: 10.17 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -1.59 Total: 2.34 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.75 Total: -55.72 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.15 Total: -16.13 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.38 -6.33 -37.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036141394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.510 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds