Wall clock time and date at job start Tue Mar 31 2020 19:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30646 * 128.63991 * 2 1 4 4 O 1.20835 * 109.61806 * 180.02562 * 3 2 1 5 5 N 1.20907 * 115.90845 * 359.69100 * 4 3 2 6 6 C 1.31600 * 109.17861 * 0.49602 * 5 4 3 7 7 C 1.48275 * 128.71286 * 179.81703 * 6 5 4 8 8 O 1.21503 * 119.99791 * 174.84817 * 7 6 5 9 9 N 1.34776 * 120.00050 * 354.84701 * 7 6 5 10 10 C 1.46918 * 120.62912 * 6.87960 * 9 7 6 11 11 C 1.53192 * 108.77935 * 126.39047 * 10 9 7 12 12 C 1.53048 * 109.31049 * 54.62994 * 11 10 9 13 13 C 1.53035 * 109.53633 * 298.63666 * 12 11 10 14 14 C 1.46927 * 120.62783 * 186.87339 * 9 7 6 15 15 H 1.09006 * 109.70234 * 113.75579 * 14 9 7 16 16 C 1.52999 * 109.59003 * 353.40011 * 14 9 7 17 17 H 1.09004 * 110.88600 * 313.65363 * 16 14 9 18 18 C 1.55156 * 111.03841 * 77.56083 * 16 14 9 19 19 C 1.54323 * 102.94031 * 153.59077 * 18 16 14 20 20 N 1.47016 * 107.27202 * 337.80418 * 19 18 16 21 21 C 1.36942 * 125.64757 * 179.20579 * 20 19 18 22 22 H 1.07991 * 120.00144 * 174.69158 * 21 20 19 23 23 C 1.38809 * 119.99598 * 354.68764 * 21 20 19 24 24 N 1.31617 * 120.00495 * 5.03635 * 23 21 20 25 25 Si 1.86806 * 119.99865 * 185.03998 * 23 21 20 26 26 H 1.48505 * 109.47006 * 94.99511 * 25 23 21 27 27 H 1.48499 * 109.47351 * 215.00012 * 25 23 21 28 28 H 1.48499 * 109.46819 * 335.00131 * 25 23 21 29 29 C 1.47424 * 108.70387 * 358.94495 * 20 19 18 30 30 H 1.08999 * 109.46712 * 269.97636 * 1 2 3 31 31 H 1.09004 * 109.46701 * 29.97525 * 1 2 3 32 32 H 1.08995 * 109.46824 * 149.97705 * 1 2 3 33 33 H 1.08999 * 109.59119 * 6.59841 * 10 9 7 34 34 H 1.09001 * 109.70312 * 246.24507 * 10 9 7 35 35 H 1.09003 * 109.49583 * 294.68471 * 11 10 9 36 36 H 1.08996 * 109.50154 * 174.58080 * 11 10 9 37 37 H 1.09008 * 109.45402 * 178.61792 * 12 11 10 38 38 H 1.08994 * 109.45708 * 58.65900 * 12 11 10 39 39 H 1.08997 * 109.50234 * 301.41119 * 13 12 11 40 40 H 1.09006 * 109.52007 * 181.33181 * 13 12 11 41 41 H 1.08999 * 110.71762 * 271.95278 * 18 16 14 42 42 H 1.09001 * 110.71753 * 35.04932 * 18 16 14 43 43 H 1.08997 * 109.87955 * 218.38877 * 19 18 16 44 44 H 1.09000 * 109.88039 * 97.22554 * 19 18 16 45 45 H 0.97002 * 119.99936 * 179.97438 * 24 23 21 46 46 H 1.09004 * 110.36899 * 142.96432 * 29 20 19 47 47 H 1.09001 * 110.36582 * 265.28283 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6266 -0.0005 5 7 3.6102 -0.5737 0.0050 6 6 2.4281 -1.1520 -0.0005 7 6 2.1034 -2.5988 -0.0008 8 8 0.9474 -2.9620 0.0881 9 7 3.0907 -3.5109 -0.0998 10 6 4.4996 -3.0966 -0.0568 11 6 5.2177 -3.9027 1.0301 12 6 5.0094 -5.3969 0.7730 13 6 3.5157 -5.7238 0.8365 14 6 2.7783 -4.9384 -0.2527 15 1 3.1031 -5.2826 -1.2346 16 6 1.2703 -5.1520 -0.1073 17 1 0.8829 -4.6122 0.7568 18 6 0.5219 -4.7394 -1.4022 19 6 -0.7520 -5.6092 -1.3572 20 7 -0.4638 -6.7609 -0.4901 21 6 -1.3421 -7.7639 -0.1772 22 1 -1.0085 -8.6129 0.4007 23 6 -2.6612 -7.6891 -0.6028 24 7 -3.0442 -6.7059 -1.3896 25 14 -3.8930 -8.9839 -0.0589 26 1 -4.6238 -8.4993 1.1396 27 1 -4.8587 -9.2408 -1.1573 28 1 -3.1755 -10.2408 0.2735 29 6 0.9292 -6.6604 -0.0182 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 4.5610 -2.0336 0.1760 34 1 4.9682 -3.2869 -1.0224 35 1 4.8094 -3.6412 2.0064 36 1 6.2833 -3.6748 1.0079 37 1 5.5398 -5.9732 1.5311 38 1 5.3955 -5.6528 -0.2136 39 1 3.1235 -5.4452 1.8146 40 1 3.3695 -6.7921 0.6768 41 1 0.2666 -3.6800 -1.3791 42 1 1.1197 -4.9714 -2.2837 43 1 -1.0011 -5.9540 -2.3608 44 1 -1.5801 -5.0327 -0.9449 45 1 -3.9659 -6.6539 -1.6873 46 1 1.0066 -7.0066 1.0125 47 1 1.5910 -7.2378 -0.6638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039254607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:01 Heat of formation + Delta-G solvation = 143.194316 kcal Electronic energy + Delta-G solvation = -30647.800938 eV Core-core repulsion = 26645.275237 eV Total energy + Delta-G solvation = -4002.525700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.04127 -40.83641 -37.64466 -36.99957 -35.35524 -35.02233 -32.94872 -32.92109 -31.09167 -29.60570 -29.04831 -27.32364 -26.39482 -24.61915 -24.48813 -22.91550 -22.60260 -21.38417 -19.98099 -19.70430 -19.62869 -19.22480 -17.92312 -17.05478 -16.64516 -16.17686 -15.43734 -15.12390 -14.55455 -14.38059 -14.37758 -14.11300 -13.84223 -13.68288 -13.59116 -13.56434 -13.15975 -13.11378 -12.41832 -12.25912 -12.15318 -11.98202 -11.79977 -11.67403 -11.37364 -11.26854 -11.05942 -10.92993 -10.80395 -10.69933 -10.54921 -10.49519 -10.08257 -9.96960 -9.72718 -9.61377 -9.51566 -9.05859 -8.55440 -8.40278 -6.68512 -5.61079 -2.93346 0.58543 1.14823 2.44704 2.87068 3.20036 3.23383 3.45284 3.50041 3.52154 3.64376 4.31792 4.52518 4.58597 4.69432 4.74293 4.79477 4.93368 4.97828 5.19641 5.26731 5.31632 5.43724 5.44783 5.57142 5.59029 5.62736 5.74007 5.77859 5.84954 5.87655 5.95610 6.00076 6.05664 6.08582 6.22723 6.32472 6.44028 6.57128 6.72674 6.86716 6.99182 7.21240 7.25961 7.67959 7.84482 7.98605 7.99852 8.28334 8.39140 9.33560 9.94618 10.62871 11.50371 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.003723 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.676980 B = 7518.304393 C = 9182.876552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.061 3.939 3 N -0.359 5.359 4 O 0.328 5.672 5 N -0.328 5.328 6 C -0.029 4.029 7 C 0.583 3.417 8 O -0.468 6.468 9 N -0.588 5.588 10 C 0.082 3.918 11 C -0.131 4.131 12 C -0.121 4.121 13 C -0.131 4.131 14 C 0.161 3.839 15 H 0.075 0.925 16 C -0.098 4.098 17 H 0.107 0.893 18 C -0.135 4.135 19 C 0.182 3.818 20 N -0.605 5.605 21 C -0.226 4.226 22 H 0.076 0.924 23 C -0.008 4.008 24 N -0.919 5.919 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.140 3.860 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.038 0.962 43 H 0.031 0.969 44 H 0.048 0.952 45 H 0.250 0.750 46 H 0.035 0.965 47 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.253 12.755 3.199 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 N -0.085 5.085 4 O 0.108 5.892 5 N -0.053 5.053 6 C -0.194 4.194 7 C 0.368 3.632 8 O -0.340 6.340 9 N -0.322 5.322 10 C -0.041 4.041 11 C -0.169 4.169 12 C -0.159 4.159 13 C -0.169 4.169 14 C 0.059 3.941 15 H 0.093 0.907 16 C -0.118 4.118 17 H 0.125 0.875 18 C -0.173 4.173 19 C 0.057 3.943 20 N -0.331 5.331 21 C -0.355 4.355 22 H 0.093 0.907 23 C -0.204 4.204 24 N -0.567 5.567 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 C 0.013 3.987 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 17.322 13.209 3.199 22.017 hybrid contribution -1.122 -1.240 0.155 1.679 sum 16.200 11.968 3.353 20.419 Atomic orbital electron populations 1.20384 0.82715 1.05485 1.04922 1.26273 1.00447 0.85120 0.98546 1.75051 0.91161 1.24057 1.18210 1.85048 1.23406 1.17250 1.63500 1.75154 1.22873 0.92626 1.14695 1.26478 0.87794 0.98915 1.06218 1.16718 0.85734 0.81094 0.79703 1.90952 1.19355 1.77266 1.46388 1.47857 1.05863 1.07161 1.71334 1.22391 0.80269 1.01861 0.99570 1.21885 1.00332 0.95739 0.98973 1.21564 0.96694 0.95591 1.02053 1.22019 0.94459 1.00947 0.99505 1.21481 0.96949 0.77160 0.98473 0.90691 1.22873 0.90062 0.97251 1.01580 0.87503 1.23270 0.98558 1.01002 0.94463 1.21090 0.92129 0.86820 0.94268 1.44467 1.07719 1.25563 1.55313 1.19059 0.89509 0.98176 1.28737 0.90650 1.24802 0.97071 0.98431 1.00130 1.70003 1.16386 1.32694 1.37591 0.86158 0.81495 0.80718 0.77774 1.21711 1.21840 1.20732 1.21617 0.87758 0.92842 0.96504 0.88717 0.89545 0.87574 0.86792 0.91270 0.91613 0.90709 0.91612 0.91755 0.91285 0.89836 0.90036 0.94303 0.95069 0.93395 0.93938 0.94698 0.97170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.20 36.01 0.37 -0.38 16 2 C 0.06 0.71 7.79 -79.33 -0.62 0.09 16 3 N -0.36 -4.08 12.22 33.76 0.41 -3.67 16 4 O 0.33 3.54 11.65 27.26 0.32 3.86 16 5 N -0.33 -3.65 8.90 33.49 0.30 -3.35 16 6 C -0.03 -0.36 7.25 -80.07 -0.58 -0.94 16 7 C 0.58 8.27 7.38 -12.13 -0.09 8.19 16 8 O -0.47 -7.88 8.96 5.36 0.05 -7.83 16 9 N -0.59 -7.54 2.97 -166.17 -0.49 -8.03 16 10 C 0.08 0.82 6.25 -3.71 -0.02 0.80 16 11 C -0.13 -1.14 6.08 -26.61 -0.16 -1.30 16 12 C -0.12 -1.12 5.88 -26.69 -0.16 -1.27 16 13 C -0.13 -1.56 4.87 -26.61 -0.13 -1.69 16 14 C 0.16 2.26 2.57 -67.60 -0.17 2.08 16 15 H 0.08 1.05 7.88 -51.93 -0.41 0.64 16 16 C -0.10 -1.79 1.90 -88.47 -0.17 -1.96 16 17 H 0.11 2.15 5.96 -52.02 -0.31 1.84 16 18 C -0.14 -2.73 5.56 -24.90 -0.14 -2.87 16 19 C 0.18 4.67 5.38 -3.07 -0.02 4.66 16 20 N -0.60 -16.11 3.39 -170.08 -0.58 -16.68 16 21 C -0.23 -6.53 10.27 -15.06 -0.15 -6.68 16 22 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 23 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 24 N -0.92 -27.88 10.34 55.49 0.57 -27.31 16 25 Si 0.91 22.63 29.56 -169.99 -5.02 17.60 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 C 0.14 2.95 5.35 -2.53 -0.01 2.94 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.11 1.17 7.40 -51.93 -0.38 0.78 16 33 H 0.11 1.15 4.06 -59.37 -0.24 0.91 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.01 7.20 -51.93 -0.37 0.64 16 41 H 0.08 1.62 5.50 -52.20 -0.29 1.33 16 42 H 0.04 0.75 7.85 -51.93 -0.41 0.34 16 43 H 0.03 0.88 7.65 -51.93 -0.40 0.49 16 44 H 0.05 1.38 7.24 -51.93 -0.38 1.00 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.03 0.72 8.13 -51.93 -0.42 0.30 16 47 H 0.01 0.22 7.87 -51.93 -0.41 -0.19 16 LS Contribution 359.57 15.07 5.42 5.42 Total: -1.00 -32.03 359.57 -8.13 -40.16 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.95 Total: -1.49 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -2.15 Total: 1.33 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.21 Total: -59.05 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: 0.37 Total: -3.97 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.03 -8.13 -40.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039254607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.354 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds