Wall clock time and date at job start Tue Mar 31 2020 19:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30646 * 128.63991 * 2 1 4 4 O 1.20835 * 109.61806 * 180.02562 * 3 2 1 5 5 N 1.20907 * 115.90845 * 359.69100 * 4 3 2 6 6 C 1.31600 * 109.17861 * 0.49602 * 5 4 3 7 7 C 1.48275 * 128.71286 * 179.81703 * 6 5 4 8 8 O 1.21503 * 119.99791 * 174.84817 * 7 6 5 9 9 N 1.34776 * 120.00050 * 354.84701 * 7 6 5 10 10 C 1.46918 * 120.62912 * 6.87960 * 9 7 6 11 11 C 1.53192 * 108.77935 * 126.39047 * 10 9 7 12 12 C 1.53048 * 109.31049 * 54.62994 * 11 10 9 13 13 C 1.53035 * 109.53633 * 298.63666 * 12 11 10 14 14 C 1.46927 * 120.62783 * 186.87339 * 9 7 6 15 15 H 1.09006 * 109.70234 * 113.75579 * 14 9 7 16 16 C 1.52999 * 109.59003 * 353.40011 * 14 9 7 17 17 H 1.09004 * 110.88600 * 313.65363 * 16 14 9 18 18 C 1.55156 * 111.03841 * 77.56083 * 16 14 9 19 19 C 1.54323 * 102.94031 * 153.59077 * 18 16 14 20 20 N 1.47016 * 107.27202 * 337.80418 * 19 18 16 21 21 C 1.36942 * 125.64757 * 179.20579 * 20 19 18 22 22 H 1.07991 * 120.00144 * 174.69158 * 21 20 19 23 23 C 1.38809 * 119.99598 * 354.68764 * 21 20 19 24 24 N 1.31617 * 120.00495 * 5.03635 * 23 21 20 25 25 Si 1.86806 * 119.99865 * 185.03998 * 23 21 20 26 26 H 1.48505 * 109.47006 * 94.99511 * 25 23 21 27 27 H 1.48499 * 109.47351 * 215.00012 * 25 23 21 28 28 H 1.48499 * 109.46819 * 335.00131 * 25 23 21 29 29 C 1.47424 * 108.70387 * 358.94495 * 20 19 18 30 30 H 1.08999 * 109.46712 * 269.97636 * 1 2 3 31 31 H 1.09004 * 109.46701 * 29.97525 * 1 2 3 32 32 H 1.08995 * 109.46824 * 149.97705 * 1 2 3 33 33 H 1.08999 * 109.59119 * 6.59841 * 10 9 7 34 34 H 1.09001 * 109.70312 * 246.24507 * 10 9 7 35 35 H 1.09003 * 109.49583 * 294.68471 * 11 10 9 36 36 H 1.08996 * 109.50154 * 174.58080 * 11 10 9 37 37 H 1.09008 * 109.45402 * 178.61792 * 12 11 10 38 38 H 1.08994 * 109.45708 * 58.65900 * 12 11 10 39 39 H 1.08997 * 109.50234 * 301.41119 * 13 12 11 40 40 H 1.09006 * 109.52007 * 181.33181 * 13 12 11 41 41 H 1.08999 * 110.71762 * 271.95278 * 18 16 14 42 42 H 1.09001 * 110.71753 * 35.04932 * 18 16 14 43 43 H 1.08997 * 109.87955 * 218.38877 * 19 18 16 44 44 H 1.09000 * 109.88039 * 97.22554 * 19 18 16 45 45 H 0.97002 * 119.99936 * 179.97438 * 24 23 21 46 46 H 1.09004 * 110.36899 * 142.96432 * 29 20 19 47 47 H 1.09001 * 110.36582 * 265.28283 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6266 -0.0005 5 7 3.6102 -0.5737 0.0050 6 6 2.4281 -1.1520 -0.0005 7 6 2.1034 -2.5988 -0.0008 8 8 0.9474 -2.9620 0.0881 9 7 3.0907 -3.5109 -0.0998 10 6 4.4996 -3.0966 -0.0568 11 6 5.2177 -3.9027 1.0301 12 6 5.0094 -5.3969 0.7730 13 6 3.5157 -5.7238 0.8365 14 6 2.7783 -4.9384 -0.2527 15 1 3.1031 -5.2826 -1.2346 16 6 1.2703 -5.1520 -0.1073 17 1 0.8829 -4.6122 0.7568 18 6 0.5219 -4.7394 -1.4022 19 6 -0.7520 -5.6092 -1.3572 20 7 -0.4638 -6.7609 -0.4901 21 6 -1.3421 -7.7639 -0.1772 22 1 -1.0085 -8.6129 0.4007 23 6 -2.6612 -7.6891 -0.6028 24 7 -3.0442 -6.7059 -1.3896 25 14 -3.8930 -8.9839 -0.0589 26 1 -4.6238 -8.4993 1.1396 27 1 -4.8587 -9.2408 -1.1573 28 1 -3.1755 -10.2408 0.2735 29 6 0.9292 -6.6604 -0.0182 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 4.5610 -2.0336 0.1760 34 1 4.9682 -3.2869 -1.0224 35 1 4.8094 -3.6412 2.0064 36 1 6.2833 -3.6748 1.0079 37 1 5.5398 -5.9732 1.5311 38 1 5.3955 -5.6528 -0.2136 39 1 3.1235 -5.4452 1.8146 40 1 3.3695 -6.7921 0.6768 41 1 0.2666 -3.6800 -1.3791 42 1 1.1197 -4.9714 -2.2837 43 1 -1.0011 -5.9540 -2.3608 44 1 -1.5801 -5.0327 -0.9449 45 1 -3.9659 -6.6539 -1.6873 46 1 1.0066 -7.0066 1.0125 47 1 1.5910 -7.2378 -0.6638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039254607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:00 Heat of formation + Delta-G solvation = 124.165948 kcal Electronic energy + Delta-G solvation = -30648.626070 eV Core-core repulsion = 26645.275237 eV Total energy + Delta-G solvation = -4003.350832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -47.96103 -41.98086 -38.93534 -38.42286 -36.27044 -36.06874 -34.70438 -33.85907 -32.63527 -30.88376 -30.43330 -28.80016 -27.64536 -26.33964 -25.52832 -24.10166 -23.57582 -22.47545 -21.71004 -21.10048 -20.78050 -20.14166 -18.86812 -18.82765 -17.97756 -17.36566 -16.71951 -16.63274 -16.18612 -15.68450 -15.41453 -15.23408 -15.00414 -14.85256 -14.58025 -14.45349 -14.25435 -14.12439 -14.00263 -13.75967 -13.63707 -13.39962 -12.98073 -12.91615 -12.76900 -12.75539 -12.34584 -12.24674 -12.09644 -11.99537 -11.91193 -11.74100 -11.56518 -11.53366 -11.29885 -11.19449 -11.11321 -10.66610 -10.35899 -9.61702 -8.84409 -7.82546 -5.18017 -0.37706 0.23724 1.42417 1.44819 1.47575 1.56244 1.80052 2.25856 2.35400 2.50656 2.72100 3.31291 3.38291 3.58433 3.63562 3.80714 3.89202 3.98500 4.06426 4.08541 4.18676 4.23997 4.33657 4.42726 4.56745 4.56965 4.63540 4.67719 4.75788 4.84283 4.89625 4.94401 4.95010 5.06380 5.07571 5.10779 5.19818 5.23279 5.28089 5.44637 5.47752 5.50518 5.69489 5.76291 5.84794 6.17790 6.22792 6.89656 7.12526 7.36952 7.81354 8.48069 9.28171 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.003723 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.676980 B = 7518.304393 C = 9182.876552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.060 3.940 3 N -0.360 5.360 4 O 0.342 5.658 5 N -0.315 5.315 6 C -0.043 4.043 7 C 0.582 3.418 8 O -0.505 6.505 9 N -0.585 5.585 10 C 0.078 3.922 11 C -0.126 4.126 12 C -0.115 4.115 13 C -0.128 4.128 14 C 0.168 3.832 15 H 0.084 0.916 16 C -0.078 4.078 17 H 0.088 0.912 18 C -0.119 4.119 19 C 0.193 3.807 20 N -0.628 5.628 21 C -0.244 4.244 22 H 0.083 0.917 23 C -0.068 4.068 24 N -0.952 5.952 25 Si 0.979 3.021 26 H -0.288 1.288 27 H -0.294 1.294 28 H -0.265 1.265 29 C 0.137 3.863 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.051 0.949 43 H -0.007 1.007 44 H 0.006 0.994 45 H 0.245 0.755 46 H 0.039 0.961 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.983 12.884 3.914 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 N -0.086 5.086 4 O 0.118 5.882 5 N -0.038 5.038 6 C -0.208 4.208 7 C 0.367 3.633 8 O -0.380 6.380 9 N -0.318 5.318 10 C -0.043 4.043 11 C -0.164 4.164 12 C -0.153 4.153 13 C -0.166 4.166 14 C 0.065 3.935 15 H 0.102 0.898 16 C -0.097 4.097 17 H 0.106 0.894 18 C -0.157 4.157 19 C 0.068 3.932 20 N -0.354 5.354 21 C -0.373 4.373 22 H 0.101 0.899 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.807 3.193 26 H -0.215 1.215 27 H -0.221 1.221 28 H -0.190 1.190 29 C 0.011 3.989 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.133 0.867 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.012 0.988 44 H 0.024 0.976 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 20.123 13.318 3.931 24.449 hybrid contribution -1.902 -1.226 -0.059 2.264 sum 18.221 12.092 3.872 22.208 Atomic orbital electron populations 1.20428 0.81864 1.05597 1.05511 1.26501 1.01088 0.84835 0.98102 1.75069 0.91167 1.23866 1.18497 1.85043 1.23269 1.17042 1.62823 1.75160 1.22188 0.92639 1.13840 1.26201 0.88529 0.98252 1.07794 1.16925 0.85488 0.81918 0.78979 1.90931 1.20699 1.78000 1.48382 1.47958 1.07033 1.06402 1.70432 1.22625 0.78487 1.02168 1.01042 1.21886 1.01679 0.95030 0.97841 1.21544 0.94322 0.96116 1.03310 1.21988 0.96402 1.00353 0.97895 1.21313 0.93787 0.78452 0.99909 0.89832 1.22607 0.93115 0.94453 0.99550 0.89375 1.23109 0.96212 1.00141 0.96189 1.20796 0.93670 0.87024 0.91741 1.44812 1.09711 1.25198 1.55717 1.19507 0.90372 0.98990 1.28396 0.89899 1.25710 0.99039 1.00893 1.00457 1.70246 1.16279 1.34708 1.38841 0.85057 0.78707 0.78636 0.76936 1.21474 1.22086 1.18966 1.21813 0.85235 0.95168 0.96649 0.87868 0.87589 0.89220 0.86744 0.89730 0.92409 0.87981 0.90050 0.90633 0.92307 0.89981 0.89541 0.93081 0.98843 0.97577 0.94559 0.94233 0.95738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.20 71.24 0.73 -0.74 16 2 C 0.06 1.32 7.79 45.18 0.35 1.67 16 3 N -0.36 -7.62 12.22 -51.81 -0.63 -8.26 16 4 O 0.34 6.71 11.65 140.85 1.64 8.35 16 5 N -0.31 -6.40 8.90 -52.06 -0.46 -6.86 16 6 C -0.04 -1.03 7.25 44.29 0.32 -0.71 16 7 C 0.58 16.17 7.38 86.91 0.64 16.82 16 8 O -0.51 -17.39 8.96 -3.72 -0.03 -17.43 16 9 N -0.59 -14.01 2.97 -797.93 -2.37 -16.38 16 10 C 0.08 1.33 6.25 86.36 0.54 1.87 16 11 C -0.13 -1.73 6.08 30.67 0.19 -1.55 16 12 C -0.12 -1.70 5.88 30.62 0.18 -1.52 16 13 C -0.13 -2.76 4.87 30.67 0.15 -2.61 16 14 C 0.17 4.42 2.57 44.97 0.12 4.53 16 15 H 0.08 2.12 7.88 -2.38 -0.02 2.10 16 16 C -0.08 -2.85 1.90 -9.40 -0.02 -2.86 16 17 H 0.09 3.63 5.96 -5.24 -0.03 3.60 16 18 C -0.12 -4.92 5.56 31.78 0.18 -4.74 16 19 C 0.19 10.47 5.38 86.73 0.47 10.93 16 20 N -0.63 -34.49 3.39 -692.02 -2.35 -36.84 16 21 C -0.24 -14.36 10.27 84.03 0.86 -13.49 16 22 H 0.08 4.62 7.83 -2.92 -0.02 4.60 16 23 C -0.07 -4.07 5.48 84.86 0.47 -3.61 16 24 N -0.95 -60.34 10.34 21.65 0.22 -60.12 16 25 Si 0.98 47.43 29.56 68.60 2.03 49.46 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 29 C 0.14 5.79 5.35 86.85 0.46 6.26 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.09 2.06 7.40 -2.39 -0.02 2.04 16 33 H 0.12 1.98 4.06 -16.25 -0.07 1.91 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.80 7.20 -2.38 -0.02 1.78 16 41 H 0.09 3.56 5.50 -8.06 -0.04 3.51 16 42 H 0.05 1.96 7.85 -2.39 -0.02 1.94 16 43 H -0.01 -0.40 7.65 -2.39 -0.02 -0.42 16 44 H 0.01 0.37 7.24 -2.39 -0.02 0.35 16 45 H 0.25 15.05 8.31 -92.71 -0.77 14.27 16 46 H 0.04 1.63 8.13 -2.39 -0.02 1.61 16 47 H 0.02 0.99 7.87 -2.39 -0.02 0.97 16 Total: -1.00 -72.33 359.57 4.56 -67.77 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.88 Total: 10.04 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 5.63 Total: 10.27 kcal Atomic # 7 Polarization: -122.86 SS G_CDS: -5.59 Total: -128.45 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 1.61 Total: -9.08 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -72.33 4.56 -67.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039254607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.936 kcal (2) G-P(sol) polarization free energy of solvation -72.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds