Wall clock time and date at job start Tue Mar 31 2020 19:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.41263 * 128.07268 * 2 1 4 4 N 1.30123 * 106.58851 * 180.23427 * 3 2 1 5 5 O 1.20891 * 111.98267 * 359.77553 * 4 3 2 6 6 C 1.34641 * 111.46691 * 0.02562 * 5 4 3 7 7 C 1.47516 * 126.94168 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99597 * 187.36542 * 7 6 5 9 9 N 1.34769 * 120.00098 * 7.35797 * 7 6 5 10 10 C 1.47082 * 120.88102 * 186.10076 * 9 7 6 11 11 C 1.53243 * 108.52013 * 231.20731 * 10 9 7 12 12 N 1.46897 * 109.34065 * 306.16837 * 11 10 9 13 13 C 1.46896 * 111.00070 * 187.25225 * 12 11 10 14 14 H 1.08999 * 110.64337 * 297.34783 * 13 12 11 15 15 C 1.55158 * 110.72155 * 60.49372 * 13 12 11 16 16 C 1.54904 * 101.58420 * 153.86569 * 15 13 12 17 17 N 1.47430 * 104.83031 * 322.98535 * 16 15 13 18 18 C 1.36940 * 125.64815 * 204.09131 * 17 16 15 19 19 H 1.07995 * 119.99894 * 164.16017 * 18 17 16 20 20 C 1.38820 * 120.00003 * 344.16170 * 18 17 16 21 21 N 1.31618 * 119.99677 * 156.77329 * 20 18 17 22 22 Si 1.86800 * 119.99874 * 336.77785 * 20 18 17 23 23 H 1.48498 * 109.47086 * 90.00024 * 22 20 18 24 24 H 1.48500 * 109.47324 * 329.99803 * 22 20 18 25 25 H 1.48499 * 109.47122 * 209.99887 * 22 20 18 26 26 C 1.47017 * 108.70079 * 24.36260 * 17 16 15 27 27 C 1.46900 * 111.27038 * 63.10295 * 12 11 10 28 28 C 1.47084 * 120.88445 * 6.12103 * 9 7 6 29 29 H 1.08999 * 109.47392 * 270.12892 * 1 2 3 30 30 H 1.08991 * 109.47391 * 30.13542 * 1 2 3 31 31 H 1.09004 * 109.46489 * 150.13174 * 1 2 3 32 32 H 1.07999 * 126.70173 * 359.97438 * 3 2 1 33 33 H 1.08995 * 109.63145 * 111.49809 * 10 9 7 34 34 H 1.09004 * 109.62955 * 350.91088 * 10 9 7 35 35 H 1.08992 * 109.49535 * 186.20874 * 11 10 9 36 36 H 1.08998 * 109.51662 * 66.13736 * 11 10 9 37 37 H 1.09003 * 111.00249 * 35.78806 * 15 13 12 38 38 H 1.09004 * 111.00191 * 271.93913 * 15 13 12 39 39 H 1.09007 * 110.36500 * 204.15195 * 16 15 13 40 40 H 1.08993 * 110.36981 * 81.82777 * 16 15 13 41 41 H 0.97003 * 120.00150 * 4.52595 * 21 20 18 42 42 H 1.09001 * 109.88352 * 118.13245 * 26 17 16 43 43 H 1.09003 * 109.88118 * 239.28914 * 26 17 16 44 44 H 1.09008 * 109.49216 * 56.85693 * 27 12 11 45 45 H 1.09003 * 109.49532 * 176.93626 * 27 12 11 46 46 H 1.08993 * 109.62693 * 248.50335 * 28 9 7 47 47 H 1.09001 * 109.62440 * 9.07971 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3782 1.1121 0.0000 4 7 3.5890 0.6355 -0.0051 5 8 3.5995 -0.5734 -0.0038 6 6 2.3508 -1.0770 0.0020 7 6 1.9696 -2.5020 0.0047 8 8 0.8032 -2.8195 -0.1250 9 7 2.9144 -3.4520 0.1507 10 6 2.5770 -4.8780 0.0235 11 6 3.1147 -5.6170 1.2536 12 7 4.5470 -5.3288 1.4067 13 6 5.1388 -6.1514 2.4702 14 1 4.6822 -5.9215 3.4328 15 6 4.9951 -7.6608 2.1409 16 6 6.1890 -8.2645 2.9217 17 7 7.2691 -7.2701 2.7877 18 6 8.6098 -7.5292 2.8908 19 1 9.3284 -6.8077 2.5312 20 6 9.0452 -8.7193 3.4575 21 7 10.2395 -9.1890 3.1654 22 14 7.9359 -9.6540 4.6345 23 1 7.0990 -10.6131 3.8697 24 1 7.0587 -8.6961 5.3543 25 1 8.7683 -10.3960 5.6152 26 6 6.6681 -5.9531 2.5315 27 6 4.7795 -3.8998 1.6555 28 6 4.3100 -3.0904 0.4419 29 1 -0.3634 0.0023 1.0276 30 1 -0.3634 0.8887 -0.5159 31 1 -0.3632 -0.8912 -0.5118 32 1 2.0945 2.1541 -0.0004 33 1 3.0367 -5.2840 -0.8775 34 1 1.4946 -4.9949 -0.0296 35 1 2.9713 -6.6898 1.1249 36 1 2.5795 -5.2825 2.1422 37 1 5.0982 -7.8387 1.0705 38 1 4.0478 -8.0530 2.5111 39 1 6.4905 -9.2140 2.4791 40 1 5.9265 -8.4004 3.9708 41 1 10.8407 -8.6720 2.6067 42 1 6.9228 -5.2660 3.3384 43 1 7.0275 -5.5603 1.5803 44 1 4.2209 -3.5888 2.5384 45 1 5.8434 -3.7273 1.8183 46 1 4.9361 -3.3247 -0.4189 47 1 4.3733 -2.0254 0.6653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046076589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:32 Heat of formation + Delta-G solvation = 84.266323 kcal Electronic energy + Delta-G solvation = -29449.703195 eV Core-core repulsion = 25444.622185 eV Total energy + Delta-G solvation = -4005.081010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.44558 -40.50860 -38.88534 -37.07487 -35.26273 -34.46570 -32.92649 -32.21179 -31.41772 -29.73055 -28.85136 -28.33488 -26.50937 -24.31219 -24.25908 -23.33449 -22.62377 -21.46358 -20.72266 -20.14083 -19.59745 -18.26720 -18.10474 -17.42177 -16.78067 -16.36052 -15.75698 -15.66119 -15.21746 -15.00606 -14.81597 -14.49281 -14.08050 -13.77586 -13.75504 -13.63628 -13.57599 -13.31161 -13.08619 -13.05006 -12.52055 -12.30549 -11.85239 -11.74805 -11.60956 -11.53800 -11.37302 -11.05937 -11.02159 -10.79780 -10.76014 -10.50796 -10.36805 -10.00676 -9.89664 -9.56942 -9.21791 -9.10309 -8.49845 -8.33060 -7.04173 -6.29721 -3.20423 0.38584 1.65909 2.13137 2.54778 2.72588 3.42303 3.52585 3.67094 3.71183 3.80268 3.94705 4.24796 4.54390 4.60729 4.64137 4.70090 4.81610 4.87680 5.01042 5.04160 5.12389 5.19040 5.22130 5.29752 5.32889 5.37677 5.43205 5.47940 5.52334 5.58627 5.62891 5.68441 5.76925 5.82481 5.91743 6.05021 6.15042 6.22818 6.46057 6.49961 6.59066 6.78988 6.83975 7.01535 7.20427 7.46138 7.71410 7.76808 8.36739 9.05881 9.60779 10.28727 11.17720 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.002499 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.619994 B =11203.411666 C =11913.770288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.119 4.119 3 C -0.013 4.013 4 N -0.343 5.343 5 O 0.116 5.884 6 C -0.092 4.092 7 C 0.606 3.394 8 O -0.516 6.516 9 N -0.597 5.597 10 C 0.119 3.881 11 C 0.040 3.960 12 N -0.526 5.526 13 C 0.071 3.929 14 H 0.047 0.953 15 C -0.121 4.121 16 C 0.107 3.893 17 N -0.606 5.606 18 C -0.324 4.324 19 H 0.074 0.926 20 C -0.020 4.020 21 N -0.922 5.922 22 Si 1.066 2.934 23 H -0.293 1.293 24 H -0.288 1.288 25 H -0.299 1.299 26 C 0.145 3.855 27 C 0.040 3.960 28 C 0.103 3.897 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.199 0.801 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.022 0.978 43 H 0.041 0.959 44 H 0.037 0.963 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.296 17.527 -6.763 28.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C -0.191 4.191 4 N -0.044 5.044 5 O 0.045 5.955 6 C -0.157 4.157 7 C 0.391 3.609 8 O -0.393 6.393 9 N -0.330 5.330 10 C -0.003 4.003 11 C -0.088 4.088 12 N -0.251 5.251 13 C -0.037 4.037 14 H 0.065 0.935 15 C -0.160 4.160 16 C -0.019 4.019 17 N -0.334 5.334 18 C -0.452 4.452 19 H 0.092 0.908 20 C -0.221 4.221 21 N -0.563 5.563 22 Si 0.898 3.102 23 H -0.221 1.221 24 H -0.215 1.215 25 H -0.227 1.227 26 C 0.018 3.982 27 C -0.088 4.088 28 C -0.020 4.020 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.216 0.784 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.040 0.960 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.116 0.884 46 H 0.106 0.894 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.469 16.403 -6.377 26.994 hybrid contribution -0.846 1.749 -0.010 1.943 sum -21.315 18.152 -6.388 28.716 Atomic orbital electron populations 1.20357 0.86294 1.04363 1.03471 1.21670 0.99065 0.90306 1.01366 1.25014 0.87682 1.02109 1.04322 1.73773 1.23187 0.91771 1.15684 1.85100 1.27975 1.15257 1.67160 1.23979 0.84697 0.96143 1.10866 1.16597 0.85218 0.81524 0.77515 1.90822 1.17242 1.80301 1.50949 1.48108 1.09289 1.06870 1.68719 1.21880 1.01822 0.77708 0.98902 1.22482 0.88340 1.01231 0.96784 1.61994 1.12841 1.04484 1.45748 1.22699 0.96345 0.93520 0.91173 0.93505 1.22811 0.98091 0.93427 1.01627 1.22002 0.88185 0.94591 0.97110 1.44722 1.02077 1.01338 1.85289 1.20028 0.79948 1.06882 1.38335 0.90844 1.25927 0.99828 0.96077 1.00235 1.70903 1.09658 1.36223 1.39547 0.83812 0.74153 0.75251 0.76976 1.22102 1.21492 1.22709 1.21301 0.88950 0.89492 0.98410 1.22480 1.02533 0.88109 0.95717 1.22297 0.80602 0.99938 0.99174 0.90182 0.90624 0.88986 0.78441 0.89812 0.88362 0.88735 0.94443 0.90143 0.91936 0.92100 0.95388 0.92725 0.95963 0.94135 0.94458 0.88432 0.89376 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.03 36.01 0.36 -0.23 16 2 C -0.12 -1.04 6.36 -103.99 -0.66 -1.70 16 3 C -0.01 -0.11 12.14 -17.13 -0.21 -0.31 16 4 N -0.34 -3.55 12.04 30.46 0.37 -3.18 16 5 O 0.12 1.20 7.96 15.55 0.12 1.32 16 6 C -0.09 -0.94 6.90 -36.32 -0.25 -1.19 16 7 C 0.61 6.79 7.69 -12.48 -0.10 6.70 16 8 O -0.52 -6.66 14.54 5.29 0.08 -6.59 16 9 N -0.60 -6.24 3.01 -173.70 -0.52 -6.77 16 10 C 0.12 1.17 6.61 -3.60 -0.02 1.14 16 11 C 0.04 0.43 5.47 -3.70 -0.02 0.41 16 12 N -0.53 -6.76 4.46 -224.14 -1.00 -7.76 16 13 C 0.07 1.11 2.64 -65.87 -0.17 0.94 16 14 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 15 C -0.12 -1.96 5.37 -24.58 -0.13 -2.10 16 16 C 0.11 2.28 4.70 -2.53 -0.01 2.27 16 17 N -0.61 -14.81 3.24 -170.06 -0.55 -15.36 16 18 C -0.32 -9.30 10.44 -15.05 -0.16 -9.46 16 19 H 0.07 2.23 8.06 -52.49 -0.42 1.80 16 20 C -0.02 -0.60 5.43 -17.43 -0.09 -0.69 16 21 N -0.92 -28.93 13.70 55.49 0.76 -28.17 16 22 Si 1.07 26.65 24.69 -169.99 -4.20 22.45 16 23 H -0.29 -6.90 6.69 56.52 0.38 -6.52 16 24 H -0.29 -6.84 6.24 56.52 0.35 -6.49 16 25 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 26 C 0.14 2.86 5.72 -3.06 -0.02 2.84 16 27 C 0.04 0.46 5.45 -3.70 -0.02 0.44 16 28 C 0.10 1.02 6.28 -3.60 -0.02 0.99 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.75 6.62 -51.93 -0.34 0.41 16 32 H 0.20 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.94 7.04 -51.93 -0.37 0.58 16 35 H 0.09 0.95 6.79 -51.93 -0.35 0.60 16 36 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 0.84 7.93 -51.93 -0.41 0.43 16 39 H 0.06 1.39 6.51 -51.92 -0.34 1.05 16 40 H 0.03 0.61 5.46 -51.93 -0.28 0.33 16 41 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.04 0.82 7.70 -51.93 -0.40 0.42 16 44 H 0.04 0.43 8.14 -51.92 -0.42 0.01 16 45 H 0.10 1.16 6.79 -51.93 -0.35 0.80 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.10 0.92 4.39 -52.19 -0.23 0.70 16 LS Contribution 362.28 15.07 5.46 5.46 Total: -1.00 -33.41 362.28 -7.96 -41.37 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.95 Total: -2.85 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.53 Total: 0.07 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.94 Total: -61.24 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: 0.20 Total: -5.26 kcal Atomic # 14 Polarization: 26.65 SS G_CDS: -4.20 Total: 22.45 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.41 -7.96 -41.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046076589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.641 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds