Wall clock time and date at job start Tue Mar 31 2020 19:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.41263 * 128.07268 * 2 1 4 4 N 1.30123 * 106.58851 * 180.23427 * 3 2 1 5 5 O 1.20891 * 111.98267 * 359.77553 * 4 3 2 6 6 C 1.34641 * 111.46691 * 0.02562 * 5 4 3 7 7 C 1.47516 * 126.94168 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99597 * 187.36542 * 7 6 5 9 9 N 1.34769 * 120.00098 * 7.35797 * 7 6 5 10 10 C 1.47082 * 120.88102 * 186.10076 * 9 7 6 11 11 C 1.53243 * 108.52013 * 231.20731 * 10 9 7 12 12 N 1.46897 * 109.34065 * 306.16837 * 11 10 9 13 13 C 1.46896 * 111.00070 * 187.25225 * 12 11 10 14 14 H 1.08999 * 110.64337 * 297.34783 * 13 12 11 15 15 C 1.55158 * 110.72155 * 60.49372 * 13 12 11 16 16 C 1.54904 * 101.58420 * 153.86569 * 15 13 12 17 17 N 1.47430 * 104.83031 * 322.98535 * 16 15 13 18 18 C 1.36940 * 125.64815 * 204.09131 * 17 16 15 19 19 H 1.07995 * 119.99894 * 164.16017 * 18 17 16 20 20 C 1.38820 * 120.00003 * 344.16170 * 18 17 16 21 21 N 1.31618 * 119.99677 * 156.77329 * 20 18 17 22 22 Si 1.86800 * 119.99874 * 336.77785 * 20 18 17 23 23 H 1.48498 * 109.47086 * 90.00024 * 22 20 18 24 24 H 1.48500 * 109.47324 * 329.99803 * 22 20 18 25 25 H 1.48499 * 109.47122 * 209.99887 * 22 20 18 26 26 C 1.47017 * 108.70079 * 24.36260 * 17 16 15 27 27 C 1.46900 * 111.27038 * 63.10295 * 12 11 10 28 28 C 1.47084 * 120.88445 * 6.12103 * 9 7 6 29 29 H 1.08999 * 109.47392 * 270.12892 * 1 2 3 30 30 H 1.08991 * 109.47391 * 30.13542 * 1 2 3 31 31 H 1.09004 * 109.46489 * 150.13174 * 1 2 3 32 32 H 1.07999 * 126.70173 * 359.97438 * 3 2 1 33 33 H 1.08995 * 109.63145 * 111.49809 * 10 9 7 34 34 H 1.09004 * 109.62955 * 350.91088 * 10 9 7 35 35 H 1.08992 * 109.49535 * 186.20874 * 11 10 9 36 36 H 1.08998 * 109.51662 * 66.13736 * 11 10 9 37 37 H 1.09003 * 111.00249 * 35.78806 * 15 13 12 38 38 H 1.09004 * 111.00191 * 271.93913 * 15 13 12 39 39 H 1.09007 * 110.36500 * 204.15195 * 16 15 13 40 40 H 1.08993 * 110.36981 * 81.82777 * 16 15 13 41 41 H 0.97003 * 120.00150 * 4.52595 * 21 20 18 42 42 H 1.09001 * 109.88352 * 118.13245 * 26 17 16 43 43 H 1.09003 * 109.88118 * 239.28914 * 26 17 16 44 44 H 1.09008 * 109.49216 * 56.85693 * 27 12 11 45 45 H 1.09003 * 109.49532 * 176.93626 * 27 12 11 46 46 H 1.08993 * 109.62693 * 248.50335 * 28 9 7 47 47 H 1.09001 * 109.62440 * 9.07971 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3782 1.1121 0.0000 4 7 3.5890 0.6355 -0.0051 5 8 3.5995 -0.5734 -0.0038 6 6 2.3508 -1.0770 0.0020 7 6 1.9696 -2.5020 0.0047 8 8 0.8032 -2.8195 -0.1250 9 7 2.9144 -3.4520 0.1507 10 6 2.5770 -4.8780 0.0235 11 6 3.1147 -5.6170 1.2536 12 7 4.5470 -5.3288 1.4067 13 6 5.1388 -6.1514 2.4702 14 1 4.6822 -5.9215 3.4328 15 6 4.9951 -7.6608 2.1409 16 6 6.1890 -8.2645 2.9217 17 7 7.2691 -7.2701 2.7877 18 6 8.6098 -7.5292 2.8908 19 1 9.3284 -6.8077 2.5312 20 6 9.0452 -8.7193 3.4575 21 7 10.2395 -9.1890 3.1654 22 14 7.9359 -9.6540 4.6345 23 1 7.0990 -10.6131 3.8697 24 1 7.0587 -8.6961 5.3543 25 1 8.7683 -10.3960 5.6152 26 6 6.6681 -5.9531 2.5315 27 6 4.7795 -3.8998 1.6555 28 6 4.3100 -3.0904 0.4419 29 1 -0.3634 0.0023 1.0276 30 1 -0.3634 0.8887 -0.5159 31 1 -0.3632 -0.8912 -0.5118 32 1 2.0945 2.1541 -0.0004 33 1 3.0367 -5.2840 -0.8775 34 1 1.4946 -4.9949 -0.0296 35 1 2.9713 -6.6898 1.1249 36 1 2.5795 -5.2825 2.1422 37 1 5.0982 -7.8387 1.0705 38 1 4.0478 -8.0530 2.5111 39 1 6.4905 -9.2140 2.4791 40 1 5.9265 -8.4004 3.9708 41 1 10.8407 -8.6720 2.6067 42 1 6.9228 -5.2660 3.3384 43 1 7.0275 -5.5603 1.5803 44 1 4.2209 -3.5888 2.5384 45 1 5.8434 -3.7273 1.8183 46 1 4.9361 -3.3247 -0.4189 47 1 4.3733 -2.0254 0.6653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046076589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:31 Heat of formation + Delta-G solvation = 60.330597 kcal Electronic energy + Delta-G solvation = -29450.741126 eV Core-core repulsion = 25444.622185 eV Total energy + Delta-G solvation = -4006.118941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.12719 -41.39750 -40.06987 -38.33641 -36.10743 -35.52791 -34.26669 -33.56853 -32.28416 -31.28461 -29.92256 -29.35635 -27.69282 -25.58512 -25.18492 -24.57742 -23.44483 -22.50561 -22.11231 -21.23985 -20.74782 -19.51306 -19.02696 -18.88561 -17.72838 -17.13747 -17.01837 -16.93688 -16.35608 -15.97959 -15.75331 -15.57295 -15.35497 -15.14430 -15.00029 -14.77679 -14.40269 -14.32227 -14.13561 -13.81220 -13.63617 -13.44739 -13.21885 -12.99114 -12.92529 -12.67960 -12.55909 -12.33669 -12.27936 -12.03951 -11.69335 -11.67060 -11.49728 -11.44373 -11.33363 -11.21953 -10.65672 -10.60416 -9.97143 -9.33391 -9.11830 -8.60993 -5.45342 -0.35635 1.03186 1.37674 1.41543 1.54786 1.71343 1.74403 1.94735 2.54055 2.71502 3.08865 3.14787 3.21797 3.48268 3.58886 3.62713 3.77523 3.88067 3.93353 3.97276 4.16913 4.20765 4.23738 4.27588 4.34562 4.41670 4.51911 4.60548 4.71443 4.73548 4.79046 4.80024 4.82365 4.84714 4.91484 4.96396 4.96688 5.03323 5.07258 5.22288 5.29075 5.29476 5.60949 5.92960 6.02259 6.11199 6.14021 6.65692 6.84790 7.00060 7.49560 8.15177 8.86047 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.002499 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.619994 B =11203.411666 C =11913.770288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.116 4.116 3 C -0.001 4.001 4 N -0.367 5.367 5 O 0.103 5.897 6 C -0.112 4.112 7 C 0.606 3.394 8 O -0.537 6.537 9 N -0.598 5.598 10 C 0.121 3.879 11 C 0.044 3.956 12 N -0.531 5.531 13 C 0.088 3.912 14 H 0.057 0.943 15 C -0.106 4.106 16 C 0.096 3.904 17 N -0.629 5.629 18 C -0.316 4.316 19 H 0.038 0.962 20 C -0.077 4.077 21 N -0.957 5.957 22 Si 1.108 2.892 23 H -0.268 1.268 24 H -0.267 1.267 25 H -0.306 1.306 26 C 0.142 3.858 27 C 0.042 3.958 28 C 0.111 3.889 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.234 0.766 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.039 0.961 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.044 0.956 40 H 0.035 0.965 41 H 0.247 0.753 42 H 0.018 0.982 43 H 0.032 0.968 44 H 0.040 0.960 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.868 18.539 -6.615 31.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C -0.179 4.179 4 N -0.071 5.071 5 O 0.035 5.965 6 C -0.177 4.177 7 C 0.393 3.607 8 O -0.415 6.415 9 N -0.330 5.330 10 C -0.001 4.001 11 C -0.084 4.084 12 N -0.257 5.257 13 C -0.021 4.021 14 H 0.075 0.925 15 C -0.144 4.144 16 C -0.029 4.029 17 N -0.357 5.357 18 C -0.445 4.445 19 H 0.056 0.944 20 C -0.271 4.271 21 N -0.601 5.601 22 Si 0.934 3.066 23 H -0.194 1.194 24 H -0.192 1.192 25 H -0.235 1.235 26 C 0.017 3.983 27 C -0.087 4.087 28 C -0.012 4.012 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.250 0.750 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.036 0.964 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -24.076 17.426 -6.255 30.372 hybrid contribution 0.271 1.608 -0.137 1.637 sum -23.805 19.035 -6.392 31.143 Atomic orbital electron populations 1.20425 0.84875 1.04871 1.04116 1.22057 1.00034 0.90055 0.99951 1.25593 0.86593 1.03484 1.02187 1.73763 1.24552 0.91833 1.16934 1.85067 1.28039 1.15421 1.67962 1.23985 0.85250 0.96126 1.12319 1.16698 0.84978 0.81975 0.77075 1.90807 1.17938 1.80766 1.52024 1.48167 1.09256 1.07161 1.68396 1.21906 1.02128 0.77257 0.98774 1.22534 0.86569 1.02171 0.97137 1.61930 1.14412 1.04806 1.44518 1.22423 0.93212 0.93858 0.92590 0.92504 1.22745 0.97529 0.93095 1.01049 1.22186 0.89037 0.93580 0.98114 1.44830 1.01351 1.04269 1.85261 1.19905 0.82007 1.05859 1.36709 0.94400 1.27225 1.00520 0.97794 1.01566 1.71021 1.10874 1.36972 1.41249 0.83282 0.73159 0.75058 0.75097 1.19403 1.19243 1.23500 1.21387 0.92083 0.87288 0.97534 1.22472 1.02124 0.87556 0.96509 1.22218 0.80403 1.00029 0.98532 0.89346 0.87924 0.90624 0.74975 0.89257 0.87876 0.87414 0.94280 0.90082 0.87895 0.93802 0.94738 0.94360 0.96391 0.95039 0.94208 0.89324 0.89242 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.03 71.24 0.71 -0.23 16 2 C -0.12 -1.79 6.36 -19.45 -0.12 -1.91 16 3 C 0.00 -0.01 12.14 85.69 1.04 1.03 16 4 N -0.37 -7.07 12.04 -58.55 -0.71 -7.77 16 5 O 0.10 2.04 7.96 65.83 0.52 2.57 16 6 C -0.11 -2.16 6.90 24.39 0.17 -1.99 16 7 C 0.61 12.86 7.69 86.69 0.67 13.53 16 8 O -0.54 -13.22 14.54 -3.97 -0.06 -13.28 16 9 N -0.60 -11.57 3.01 -821.72 -2.47 -14.04 16 10 C 0.12 2.10 6.61 86.35 0.57 2.67 16 11 C 0.04 0.81 5.47 86.39 0.47 1.28 16 12 N -0.53 -12.44 4.46 -863.06 -3.84 -16.28 16 13 C 0.09 2.53 2.64 46.11 0.12 2.65 16 14 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 15 C -0.11 -3.07 5.37 31.98 0.17 -2.90 16 16 C 0.10 3.88 4.70 86.85 0.41 4.29 16 17 N -0.63 -30.61 3.24 -691.96 -2.24 -32.85 16 18 C -0.32 -18.64 10.44 84.03 0.88 -17.76 16 19 H 0.04 2.44 8.06 -2.91 -0.02 2.41 16 20 C -0.08 -4.66 5.43 84.86 0.46 -4.20 16 21 N -0.96 -62.17 13.70 21.65 0.30 -61.87 16 22 Si 1.11 53.56 24.69 68.60 1.69 55.25 16 23 H -0.27 -11.78 6.69 99.48 0.67 -11.12 16 24 H -0.27 -11.83 6.24 99.48 0.62 -11.21 16 25 H -0.31 -15.08 7.11 99.48 0.71 -14.38 16 26 C 0.14 5.56 5.72 86.73 0.50 6.05 16 27 C 0.04 0.90 5.45 86.38 0.47 1.37 16 28 C 0.11 2.07 6.28 86.35 0.54 2.61 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 1.13 6.62 -2.39 -0.02 1.11 16 32 H 0.23 1.16 8.06 -2.91 -0.02 1.14 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.10 1.75 7.04 -2.38 -0.02 1.73 16 35 H 0.11 1.72 6.79 -2.39 -0.02 1.70 16 36 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.10 2.23 7.93 -2.38 -0.02 2.21 16 39 H 0.04 1.92 6.51 -2.38 -0.02 1.91 16 40 H 0.04 1.39 5.46 -2.39 -0.01 1.38 16 41 H 0.25 16.18 8.73 -92.71 -0.81 15.37 16 42 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.03 1.28 7.70 -2.39 -0.02 1.26 16 44 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.09 2.06 6.79 -2.39 -0.02 2.04 16 46 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.11 1.88 4.39 -6.56 -0.03 1.85 16 Total: -1.00 -74.84 362.28 1.06 -73.78 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 0.80 Total: 8.01 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 7.06 Total: 6.49 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -8.96 Total: -132.82 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.47 Total: -10.71 kcal Atomic # 14 Polarization: 53.56 SS G_CDS: 1.69 Total: 55.25 kcal Total: -74.84 1.06 -73.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046076589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.109 kcal (2) G-P(sol) polarization free energy of solvation -74.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds