Wall clock time and date at job start Tue Mar 31 2020 19:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35315 * 128.03701 * 2 1 4 4 O 1.34020 * 106.66367 * 179.97438 * 3 2 1 5 5 N 1.20896 * 111.84819 * 359.70736 * 4 3 2 6 6 C 1.30982 * 111.44184 * 0.48548 * 5 4 3 7 7 C 1.48338 * 126.94252 * 179.79517 * 6 5 4 8 8 O 1.21497 * 119.99934 * 173.81909 * 7 6 5 9 9 N 1.34770 * 119.99765 * 353.81759 * 7 6 5 10 10 C 1.47082 * 120.88099 * 354.11888 * 9 7 6 11 11 C 1.53247 * 108.52092 * 231.20316 * 10 9 7 12 12 N 1.46895 * 109.34016 * 306.17537 * 11 10 9 13 13 C 1.46899 * 111.00010 * 187.25283 * 12 11 10 14 14 H 1.08996 * 110.88491 * 303.87668 * 13 12 11 15 15 C 1.55161 * 111.00564 * 179.97438 * 13 12 11 16 16 C 1.54325 * 102.94258 * 206.42309 * 15 13 12 17 17 N 1.47023 * 107.27056 * 22.19380 * 16 15 13 18 18 C 1.36936 * 125.64856 * 181.02628 * 17 16 15 19 19 H 1.08002 * 120.00385 * 164.06707 * 18 17 16 20 20 C 1.38816 * 119.99838 * 344.07028 * 18 17 16 21 21 N 1.31611 * 120.00321 * 135.79385 * 20 18 17 22 22 Si 1.86800 * 119.99833 * 315.79269 * 20 18 17 23 23 H 1.48500 * 109.47116 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47181 * 240.00462 * 22 20 18 25 25 H 1.48495 * 109.47102 * 120.00091 * 22 20 18 26 26 C 1.47424 * 108.70224 * 1.28397 * 17 16 15 27 27 C 1.46900 * 111.27449 * 63.09761 * 12 11 10 28 28 C 1.47077 * 120.88075 * 174.13859 * 9 7 6 29 29 H 1.08999 * 109.46972 * 270.02210 * 1 2 3 30 30 H 1.08997 * 109.47137 * 30.02376 * 1 2 3 31 31 H 1.08999 * 109.47203 * 150.02134 * 1 2 3 32 32 H 1.07992 * 126.66935 * 359.96060 * 3 2 1 33 33 H 1.09003 * 109.62916 * 111.50088 * 10 9 7 34 34 H 1.08995 * 109.79230 * 351.00604 * 10 9 7 35 35 H 1.08996 * 109.49697 * 186.21167 * 11 10 9 36 36 H 1.09003 * 109.51144 * 66.14485 * 11 10 9 37 37 H 1.08994 * 110.71926 * 88.05821 * 15 13 12 38 38 H 1.09005 * 110.87053 * 324.85720 * 15 13 12 39 39 H 1.09000 * 109.88304 * 262.77711 * 16 15 13 40 40 H 1.09000 * 110.01127 * 141.68342 * 16 15 13 41 41 H 0.97009 * 120.00114 * 5.16675 * 21 20 18 42 42 H 1.09006 * 110.36298 * 94.48745 * 26 17 16 43 43 H 1.09003 * 110.36833 * 216.80514 * 26 17 16 44 44 H 1.09000 * 109.48739 * 56.85998 * 27 12 11 45 45 H 1.09003 * 109.49322 * 176.93535 * 27 12 11 46 46 H 1.09002 * 109.62916 * 248.50563 * 28 9 7 47 47 H 1.09002 * 109.63100 * 8.88989 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5773 0.0006 5 7 3.5988 -0.6316 0.0066 6 6 2.3837 -1.1205 0.0006 7 6 1.9992 -2.5532 0.0008 8 8 0.8308 -2.8685 0.1080 9 7 2.9459 -3.5050 -0.1180 10 6 4.3486 -3.1463 -0.3773 11 6 4.8461 -3.9620 -1.5754 12 7 4.6059 -5.3895 -1.3255 13 6 5.2220 -6.2179 -2.3705 14 1 4.8629 -5.9283 -3.3580 15 6 4.9689 -7.7258 -2.1063 16 6 6.1665 -8.4047 -2.8038 17 7 7.2344 -7.4001 -2.9137 18 6 8.4599 -7.5981 -3.4919 19 1 9.0753 -6.7510 -3.7567 20 6 8.9112 -8.8876 -3.7376 21 7 9.4797 -9.1778 -4.8886 22 14 8.7116 -10.2111 -2.4345 23 1 8.0463 -9.6329 -1.2395 24 1 10.0476 -10.7353 -2.0527 25 1 7.8819 -11.3174 -2.9756 26 6 6.7697 -6.1463 -2.2930 27 6 3.1700 -5.6753 -1.2054 28 6 2.6038 -4.9298 0.0078 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 2.0559 2.1074 -0.0006 33 1 4.9537 -3.3772 0.4994 34 1 4.4218 -2.0825 -0.6030 35 1 5.9138 -3.7916 -1.7134 36 1 4.3097 -3.6547 -2.4731 37 1 4.0290 -8.0438 -2.5573 38 1 4.9737 -7.9389 -1.0373 39 1 5.8733 -8.7442 -3.7972 40 1 6.5131 -9.2507 -2.2104 41 1 9.6513 -8.4756 -5.5355 42 1 7.0978 -6.0926 -1.2549 43 1 7.1378 -5.2866 -2.8530 44 1 2.6566 -5.3441 -2.1081 45 1 3.0222 -6.7474 -1.0751 46 1 3.0412 -5.3321 0.9216 47 1 1.5203 -5.0450 0.0390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046078438.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:10 Heat of formation + Delta-G solvation = 88.829846 kcal Electronic energy + Delta-G solvation = -29324.192922 eV Core-core repulsion = 25319.309801 eV Total energy + Delta-G solvation = -4004.883121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.50922 -40.43052 -38.75558 -36.91354 -35.12236 -34.53827 -32.90320 -32.20985 -31.31809 -29.58733 -28.66707 -28.29197 -26.60418 -24.73508 -24.09974 -23.12918 -22.09573 -21.63648 -20.34738 -19.98256 -19.60669 -18.20940 -18.00422 -17.43993 -17.18387 -16.27948 -15.73718 -15.59931 -15.09439 -14.97769 -14.71136 -14.37358 -14.03064 -13.96902 -13.71122 -13.69024 -13.30859 -13.16520 -13.08921 -12.81224 -12.38743 -12.27094 -12.18819 -11.87855 -11.50139 -11.43453 -11.13452 -10.97713 -10.87976 -10.69562 -10.48234 -10.39380 -10.31620 -10.22452 -9.86545 -9.72538 -9.36196 -9.03170 -8.28013 -8.09408 -7.10229 -6.38973 -3.08089 0.71877 1.24935 2.41836 2.72283 2.78628 3.46377 3.49560 3.56279 3.72814 3.85375 4.04668 4.36156 4.58517 4.63254 4.70902 4.76772 4.87427 4.93752 5.05936 5.10104 5.19281 5.20521 5.23425 5.32088 5.34685 5.38881 5.42114 5.52975 5.63491 5.64879 5.72064 5.74927 5.82081 5.89958 5.96255 6.16299 6.22037 6.26819 6.51611 6.61945 6.71530 6.90078 6.96641 7.08636 7.25192 7.52621 7.76239 7.88195 8.38418 9.02758 9.68402 10.39559 11.03112 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026446 B = 0.002445 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.506094 B =11448.388533 C =12119.595399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.152 4.152 3 C -0.063 4.063 4 O 0.119 5.881 5 N -0.325 5.325 6 C -0.024 4.024 7 C 0.597 3.403 8 O -0.526 6.526 9 N -0.595 5.595 10 C 0.094 3.906 11 C 0.043 3.957 12 N -0.527 5.527 13 C 0.069 3.931 14 H 0.050 0.950 15 C -0.122 4.122 16 C 0.130 3.870 17 N -0.601 5.601 18 C -0.356 4.356 19 H 0.071 0.929 20 C -0.001 4.001 21 N -0.887 5.887 22 Si 1.034 2.966 23 H -0.282 1.282 24 H -0.297 1.297 25 H -0.293 1.293 26 C 0.144 3.856 27 C 0.041 3.959 28 C 0.118 3.882 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.224 0.776 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.034 0.966 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.028 0.972 41 H 0.267 0.733 42 H 0.031 0.969 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.691 20.255 11.166 29.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.157 4.157 3 C -0.143 4.143 4 O 0.046 5.954 5 N -0.028 5.028 6 C -0.182 4.182 7 C 0.383 3.617 8 O -0.402 6.402 9 N -0.328 5.328 10 C -0.029 4.029 11 C -0.086 4.086 12 N -0.252 5.252 13 C -0.040 4.040 14 H 0.068 0.932 15 C -0.161 4.161 16 C 0.004 3.996 17 N -0.329 5.329 18 C -0.482 4.482 19 H 0.089 0.911 20 C -0.206 4.206 21 N -0.525 5.525 22 Si 0.865 3.135 23 H -0.209 1.209 24 H -0.224 1.224 25 H -0.221 1.221 26 C 0.018 3.982 27 C -0.088 4.088 28 C -0.004 4.004 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.240 0.760 33 H 0.099 0.901 34 H 0.133 0.867 35 H 0.112 0.888 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.112 0.888 46 H 0.099 0.901 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.559 17.737 11.913 27.655 hybrid contribution -1.150 1.976 -0.976 2.486 sum -18.708 19.713 10.937 29.295 Atomic orbital electron populations 1.20207 0.86500 1.03802 1.03277 1.21373 0.99165 0.90061 1.05116 1.25800 0.82322 1.01318 1.04902 1.84806 1.29576 1.15542 1.65463 1.74094 1.21189 0.91437 1.16117 1.23455 0.89570 0.97017 1.08186 1.16947 0.85156 0.82378 0.77208 1.90764 1.17362 1.81406 1.50636 1.48055 1.08871 1.06636 1.69257 1.22518 0.80049 1.01391 0.98911 1.22465 1.02156 0.88028 0.95930 1.61964 1.11716 1.04546 1.46967 1.22897 0.96840 0.92765 0.91470 0.93175 1.22649 0.98253 0.93981 1.01187 1.21430 0.87635 0.92819 0.97668 1.44699 1.12468 1.07861 1.67827 1.19648 0.95534 0.94291 1.38775 0.91145 1.25795 0.98241 0.97661 0.98918 1.70950 1.44888 1.33725 1.02926 0.84221 0.75762 0.75784 0.77723 1.20871 1.22436 1.22060 1.21551 0.89412 0.90930 0.96346 1.22476 0.88403 1.01101 0.96824 1.21847 1.01572 0.78083 0.98892 0.90445 0.90950 0.89633 0.75998 0.90119 0.86669 0.88752 0.94729 0.91904 0.90695 0.94769 0.95421 0.92238 0.95163 0.94484 0.94555 0.88793 0.90133 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 9.97 36.01 0.36 -0.18 16 2 C -0.15 -1.26 6.34 -104.11 -0.66 -1.92 16 3 C -0.06 -0.35 12.24 29.69 0.36 0.01 16 4 O 0.12 0.97 11.18 17.24 0.19 1.16 16 5 N -0.33 -3.40 8.66 33.29 0.29 -3.11 16 6 C -0.02 -0.26 6.89 -82.52 -0.57 -0.83 16 7 C 0.60 7.67 7.72 -12.11 -0.09 7.58 16 8 O -0.53 -7.62 14.87 5.37 0.08 -7.54 16 9 N -0.60 -7.25 3.01 -173.39 -0.52 -7.77 16 10 C 0.09 1.10 6.27 -3.60 -0.02 1.07 16 11 C 0.04 0.56 5.52 -3.70 -0.02 0.54 16 12 N -0.53 -7.43 4.52 -223.64 -1.01 -8.44 16 13 C 0.07 1.17 2.73 -65.45 -0.18 0.99 16 14 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 15 C -0.12 -2.09 5.03 -24.89 -0.13 -2.22 16 16 C 0.13 2.90 5.94 -3.06 -0.02 2.89 16 17 N -0.60 -15.11 3.20 -169.93 -0.54 -15.66 16 18 C -0.36 -10.30 10.17 -15.06 -0.15 -10.45 16 19 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 20 C 0.00 -0.04 5.18 -17.43 -0.09 -0.13 16 21 N -0.89 -27.45 13.70 55.49 0.76 -26.69 16 22 Si 1.03 26.40 26.31 -169.99 -4.47 21.93 16 23 H -0.28 -6.93 6.45 56.52 0.36 -6.56 16 24 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 C 0.14 2.98 5.95 -2.41 -0.01 2.96 16 27 C 0.04 0.49 5.43 -3.70 -0.02 0.47 16 28 C 0.12 1.34 6.61 -3.60 -0.02 1.32 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.75 7.01 -51.93 -0.36 0.38 16 32 H 0.22 0.18 8.06 -52.49 -0.42 -0.24 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.12 1.31 4.31 -54.31 -0.23 1.08 16 35 H 0.09 1.24 7.05 -51.93 -0.37 0.87 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.92 7.96 -51.93 -0.41 0.51 16 38 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.65 4.29 -51.93 -0.22 0.43 16 41 H 0.27 8.16 8.73 -40.82 -0.36 7.81 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.04 0.77 7.87 -51.93 -0.41 0.36 16 44 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 1.07 6.64 -51.93 -0.34 0.72 16 46 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.10 1.08 7.04 -51.93 -0.37 0.71 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -33.97 366.51 -7.95 -41.92 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -6.98 Total: -3.40 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -1.27 Total: 2.08 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -1.03 Total: -61.68 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: 0.27 Total: -6.38 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: -4.47 Total: 21.93 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.97 -7.95 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046078438.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.754 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds