Wall clock time and date at job start Tue Mar 31 2020 18:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35362 * 127.24566 * 2 1 4 4 N 1.35037 * 107.22933 * 180.02562 * 3 2 1 5 5 C 1.46497 * 124.88587 * 180.02562 * 4 3 2 6 6 N 1.28469 * 110.22940 * 359.74315 * 4 3 2 7 7 C 1.31811 * 110.07026 * 0.42377 * 6 4 3 8 8 C 1.47718 * 126.51814 * 179.85714 * 7 6 4 9 9 O 1.21566 * 120.00033 * 179.68525 * 8 7 6 10 10 N 1.34779 * 119.99784 * 359.68591 * 8 7 6 11 11 C 1.46493 * 119.99831 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47249 * 179.97438 * 11 10 8 13 13 H 1.08998 * 110.26615 * 304.38561 * 12 11 10 14 14 C 1.55014 * 110.38471 * 182.25456 * 12 11 10 15 15 C 1.55481 * 101.04355 * 205.00118 * 14 12 11 16 16 C 1.53657 * 101.96936 * 33.48833 * 15 14 12 17 17 C 1.52699 * 115.26805 * 206.89730 * 16 15 14 18 18 N 1.47215 * 87.79777 * 219.25202 * 17 16 15 19 19 C 1.36931 * 135.97443 * 206.46051 * 18 17 16 20 20 H 1.08007 * 119.99956 * 7.54889 * 19 18 17 21 21 C 1.38808 * 120.00292 * 187.55912 * 19 18 17 22 22 N 1.31612 * 120.00517 * 174.46509 * 21 19 18 23 23 Si 1.86807 * 119.99700 * 354.46370 * 21 19 18 24 24 H 1.48498 * 109.46909 * 174.95304 * 23 21 19 25 25 H 1.48501 * 109.47182 * 294.95359 * 23 21 19 26 26 H 1.48498 * 109.47180 * 54.94958 * 23 21 19 27 27 C 1.47208 * 88.05116 * 26.71574 * 18 17 16 28 28 O 1.42396 * 108.53333 * 339.13449 * 16 15 14 29 29 H 1.09001 * 109.47283 * 269.97428 * 1 2 3 30 30 H 1.08995 * 109.47455 * 29.97332 * 1 2 3 31 31 H 1.08999 * 109.47423 * 149.97701 * 1 2 3 32 32 H 1.07998 * 126.39199 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47168 * 89.99832 * 5 4 3 34 34 H 1.09005 * 109.47076 * 209.99675 * 5 4 3 35 35 H 1.08995 * 109.47329 * 329.99345 * 5 4 3 36 36 H 0.97003 * 119.99682 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.47523 * 59.99782 * 11 10 8 38 38 H 1.09004 * 109.46970 * 299.99837 * 11 10 8 39 39 H 1.08993 * 111.10713 * 322.95024 * 14 12 11 40 40 H 1.09004 * 111.10243 * 87.01982 * 14 12 11 41 41 H 1.09000 * 110.93424 * 275.31671 * 15 14 12 42 42 H 1.09002 * 110.93113 * 151.65565 * 15 14 12 43 43 H 1.09003 * 113.49653 * 104.52280 * 17 16 15 44 44 H 1.08997 * 113.50030 * 333.98544 * 17 16 15 45 45 H 0.97006 * 120.00008 * 354.91044 * 22 21 19 46 46 H 1.09000 * 113.49943 * 88.01766 * 27 18 17 47 47 H 1.09003 * 113.49778 * 218.55843 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6153 -0.0006 5 6 4.7937 1.4577 -0.0002 6 7 3.5998 -0.6693 0.0045 7 6 2.3635 -1.1263 -0.0005 8 6 1.9505 -2.5446 -0.0002 9 8 0.7698 -2.8339 0.0005 10 7 2.8829 -3.5179 -0.0008 11 6 2.4733 -4.9244 -0.0010 12 6 3.7158 -5.8174 -0.0023 13 1 4.3588 -5.5685 -0.8465 14 6 3.3068 -7.3115 -0.0597 15 6 4.5476 -7.9852 0.5915 16 6 4.9794 -6.9297 1.6214 17 6 6.4629 -6.9404 1.9828 18 7 6.0674 -6.6728 3.3754 19 6 6.6435 -6.0769 4.4653 20 1 7.5856 -5.5587 4.3625 21 6 6.0169 -6.1389 5.7024 22 7 6.6204 -5.6621 6.7704 23 14 4.3170 -6.8991 5.8512 24 1 3.9234 -6.9550 7.2820 25 1 3.3378 -6.0729 5.1004 26 1 4.3385 -8.2735 5.2896 27 6 4.7839 -7.3323 3.0846 28 8 4.4368 -5.6713 1.2346 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 2.0220 2.1138 -0.0004 33 1 5.0911 1.6659 1.0275 34 1 5.6026 0.9387 -0.5146 35 1 4.5792 2.3950 -0.5134 36 1 3.8250 -3.2870 -0.0017 37 1 1.8781 -5.1294 -0.8908 38 1 1.8787 -5.1298 0.8891 39 1 2.4071 -7.4950 0.5274 40 1 3.1749 -7.6429 -1.0897 41 1 5.3320 -8.1528 -0.1465 42 1 4.2712 -8.9182 1.0826 43 1 7.0271 -6.1265 1.5272 44 1 6.9369 -7.9121 1.8447 45 1 7.5314 -5.3349 6.7073 46 1 4.8029 -8.4102 3.2450 47 1 3.9298 -6.8494 3.5595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053598675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:52 Heat of formation + Delta-G solvation = 68.739129 kcal Electronic energy + Delta-G solvation = -29064.680942 eV Core-core repulsion = 25058.926623 eV Total energy + Delta-G solvation = -4005.754320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.80003 -40.23472 -39.19119 -36.84840 -34.53592 -34.05332 -32.33411 -32.18636 -31.88321 -29.69126 -28.37078 -27.30611 -26.33767 -25.43610 -23.97599 -22.43747 -21.49012 -21.05666 -20.77126 -19.93577 -19.25726 -17.80581 -17.44942 -16.71524 -16.48209 -16.47395 -15.81901 -15.69954 -14.91038 -14.59639 -14.15497 -13.91547 -13.79102 -13.74904 -13.51145 -13.44900 -13.22908 -13.06505 -12.93850 -12.80581 -12.63259 -12.42231 -12.19536 -12.11376 -11.65491 -11.57084 -11.26784 -10.90406 -10.78409 -10.63064 -10.36454 -10.21795 -9.98134 -9.61238 -9.41185 -9.07002 -9.02761 -8.84874 -8.82076 -8.71394 -7.08804 -6.21615 -3.14090 1.51132 1.96156 2.27597 3.17331 3.44654 3.46507 3.53370 3.71143 3.83250 4.15078 4.51453 4.55475 4.67736 4.69504 4.74684 4.77453 4.83330 4.93414 5.02136 5.03905 5.08610 5.14199 5.19650 5.40878 5.42168 5.50124 5.55817 5.61579 5.70629 5.75672 5.86425 5.94416 5.97920 6.05519 6.11518 6.22074 6.28551 6.36132 6.37957 6.44647 6.47381 6.54433 6.60494 7.19024 7.48271 7.52843 7.81366 8.26083 8.30867 9.05390 9.57974 10.44365 11.28824 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.003318 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.935698 B = 8437.393694 C = 9490.972928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.145 4.145 3 C -0.027 4.027 4 N -0.283 5.283 5 C 0.087 3.913 6 N -0.256 5.256 7 C -0.017 4.017 8 C 0.606 3.394 9 O -0.536 6.536 10 N -0.710 5.710 11 C 0.124 3.876 12 C 0.062 3.938 13 H 0.076 0.924 14 C -0.145 4.145 15 C -0.137 4.137 16 C 0.070 3.930 17 C 0.117 3.883 18 N -0.621 5.621 19 C -0.297 4.297 20 H 0.082 0.918 21 C -0.025 4.025 22 N -0.937 5.937 23 Si 1.068 2.932 24 H -0.295 1.295 25 H -0.291 1.291 26 H -0.288 1.288 27 C 0.092 3.908 28 O -0.331 6.331 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.181 0.819 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.411 0.589 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.259 0.741 46 H 0.055 0.945 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.304 9.529 -20.940 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.156 4.156 3 C -0.169 4.169 4 N -0.071 5.071 5 C -0.054 4.054 6 N -0.092 5.092 7 C -0.177 4.177 8 C 0.390 3.610 9 O -0.412 6.412 10 N -0.361 5.361 11 C 0.000 4.000 12 C 0.004 3.996 13 H 0.094 0.906 14 C -0.183 4.183 15 C -0.176 4.176 16 C 0.029 3.971 17 C -0.010 4.010 18 N -0.349 5.349 19 C -0.423 4.423 20 H 0.100 0.900 21 C -0.223 4.223 22 N -0.580 5.580 23 Si 0.901 3.099 24 H -0.223 1.223 25 H -0.219 1.219 26 H -0.215 1.215 27 C -0.034 4.034 28 O -0.250 6.250 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.198 0.802 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.247 0.753 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.987 9.068 -19.516 23.321 hybrid contribution 1.232 0.654 -1.054 1.748 sum -7.755 9.722 -20.570 24.037 Atomic orbital electron populations 1.20167 0.88073 1.02861 1.02461 1.20377 0.97478 0.90415 1.07296 1.22605 0.83690 1.00509 1.10090 1.45278 1.07139 1.03754 1.50957 1.22193 0.84790 0.93631 1.04743 1.73547 1.23228 0.93788 1.18652 1.21818 0.89517 0.94972 1.11385 1.16838 0.85317 0.82624 0.76204 1.90749 1.16836 1.82768 1.50851 1.45745 1.10463 1.05732 1.74138 1.21577 0.95962 0.79370 1.03061 1.23310 0.92515 0.94865 0.88904 0.90621 1.23220 0.99343 0.93763 1.02023 1.22905 0.97245 0.99187 0.98244 1.23188 0.96280 0.83120 0.94538 1.22638 0.93177 0.98519 0.86687 1.45832 1.14086 1.66069 1.08911 1.20121 1.06681 1.30095 0.85440 0.90049 1.25672 1.05764 1.00489 0.90395 1.70917 1.14198 1.44335 1.28542 0.83745 0.75706 0.75947 0.74480 1.22289 1.21923 1.21513 1.23125 0.91829 0.96704 0.91740 1.88464 1.69544 1.28978 1.37969 0.91411 0.92134 0.89937 0.80211 0.89498 0.88422 0.88648 0.75302 0.90102 0.90354 0.89872 0.89861 0.90265 0.89635 0.93222 0.93484 0.93073 0.92773 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.93 36.01 0.36 -0.48 16 2 C -0.15 -1.82 6.25 -104.41 -0.65 -2.47 16 3 C -0.03 -0.26 11.40 -17.17 -0.20 -0.46 16 4 N -0.28 -2.99 3.70 -68.13 -0.25 -3.24 16 5 C 0.09 0.49 11.31 59.85 0.68 1.17 16 6 N -0.26 -3.56 11.67 33.42 0.39 -3.17 16 7 C -0.02 -0.25 7.13 -82.76 -0.59 -0.84 16 8 C 0.61 9.70 7.83 -12.39 -0.10 9.60 16 9 O -0.54 -9.48 15.12 5.31 0.08 -9.40 16 10 N -0.71 -10.47 5.53 -61.29 -0.34 -10.81 16 11 C 0.12 1.67 5.39 -4.04 -0.02 1.64 16 12 C 0.06 0.82 3.48 -25.66 -0.09 0.73 16 13 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 14 C -0.15 -1.59 6.58 -24.35 -0.16 -1.75 16 15 C -0.14 -1.75 6.39 -25.07 -0.16 -1.91 16 16 C 0.07 1.27 1.75 -90.43 -0.16 1.11 16 17 C 0.12 2.39 8.20 -8.07 -0.07 2.32 16 18 N -0.62 -16.16 3.70 -184.59 -0.68 -16.84 16 19 C -0.30 -9.02 11.08 -15.06 -0.17 -9.19 16 20 H 0.08 2.59 8.06 -52.48 -0.42 2.17 16 21 C -0.02 -0.78 5.50 -17.43 -0.10 -0.87 16 22 N -0.94 -30.75 13.70 55.49 0.76 -29.99 16 23 Si 1.07 28.33 25.17 -169.99 -4.28 24.05 16 24 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16 25 H -0.29 -7.56 6.49 56.52 0.37 -7.19 16 26 H -0.29 -6.99 6.19 56.52 0.35 -6.64 16 27 C 0.09 2.04 5.17 -7.92 -0.04 2.00 16 28 O -0.33 -6.15 10.84 -35.23 -0.38 -6.53 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.02 6.72 -51.93 -0.35 0.67 16 32 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.24 8.13 -51.93 -0.42 -0.18 16 36 H 0.41 5.99 8.20 -40.82 -0.33 5.65 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 42 H 0.09 1.01 7.81 -51.93 -0.41 0.60 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 45 H 0.26 8.38 8.73 -40.82 -0.36 8.02 16 46 H 0.05 1.13 7.42 -51.93 -0.39 0.74 16 47 H 0.06 1.41 4.78 -51.93 -0.25 1.16 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -39.32 382.08 -7.70 -47.02 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.30 Total: 2.55 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.46 Total: 0.61 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.12 Total: -64.06 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.30 Total: -15.93 kcal Atomic # 14 Polarization: 28.33 SS G_CDS: -4.28 Total: 24.05 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.32 -7.70 -47.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053598675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.764 kcal (2) G-P(sol) polarization free energy of solvation -39.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds