Wall clock time and date at job start Tue Mar 31 2020 18:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35362 * 127.24566 * 2 1 4 4 N 1.35037 * 107.22933 * 180.02562 * 3 2 1 5 5 C 1.46497 * 124.88587 * 180.02562 * 4 3 2 6 6 N 1.28469 * 110.22940 * 359.74315 * 4 3 2 7 7 C 1.31811 * 110.07026 * 0.42377 * 6 4 3 8 8 C 1.47718 * 126.51814 * 179.85714 * 7 6 4 9 9 O 1.21566 * 120.00033 * 179.68525 * 8 7 6 10 10 N 1.34779 * 119.99784 * 359.68591 * 8 7 6 11 11 C 1.46493 * 119.99831 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47249 * 179.97438 * 11 10 8 13 13 H 1.08998 * 110.26615 * 304.38561 * 12 11 10 14 14 C 1.55014 * 110.38471 * 182.25456 * 12 11 10 15 15 C 1.55481 * 101.04355 * 205.00118 * 14 12 11 16 16 C 1.53657 * 101.96936 * 33.48833 * 15 14 12 17 17 C 1.52699 * 115.26805 * 206.89730 * 16 15 14 18 18 N 1.47215 * 87.79777 * 219.25202 * 17 16 15 19 19 C 1.36931 * 135.97443 * 206.46051 * 18 17 16 20 20 H 1.08007 * 119.99956 * 7.54889 * 19 18 17 21 21 C 1.38808 * 120.00292 * 187.55912 * 19 18 17 22 22 N 1.31612 * 120.00517 * 174.46509 * 21 19 18 23 23 Si 1.86807 * 119.99700 * 354.46370 * 21 19 18 24 24 H 1.48498 * 109.46909 * 174.95304 * 23 21 19 25 25 H 1.48501 * 109.47182 * 294.95359 * 23 21 19 26 26 H 1.48498 * 109.47180 * 54.94958 * 23 21 19 27 27 C 1.47208 * 88.05116 * 26.71574 * 18 17 16 28 28 O 1.42396 * 108.53333 * 339.13449 * 16 15 14 29 29 H 1.09001 * 109.47283 * 269.97428 * 1 2 3 30 30 H 1.08995 * 109.47455 * 29.97332 * 1 2 3 31 31 H 1.08999 * 109.47423 * 149.97701 * 1 2 3 32 32 H 1.07998 * 126.39199 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47168 * 89.99832 * 5 4 3 34 34 H 1.09005 * 109.47076 * 209.99675 * 5 4 3 35 35 H 1.08995 * 109.47329 * 329.99345 * 5 4 3 36 36 H 0.97003 * 119.99682 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.47523 * 59.99782 * 11 10 8 38 38 H 1.09004 * 109.46970 * 299.99837 * 11 10 8 39 39 H 1.08993 * 111.10713 * 322.95024 * 14 12 11 40 40 H 1.09004 * 111.10243 * 87.01982 * 14 12 11 41 41 H 1.09000 * 110.93424 * 275.31671 * 15 14 12 42 42 H 1.09002 * 110.93113 * 151.65565 * 15 14 12 43 43 H 1.09003 * 113.49653 * 104.52280 * 17 16 15 44 44 H 1.08997 * 113.50030 * 333.98544 * 17 16 15 45 45 H 0.97006 * 120.00008 * 354.91044 * 22 21 19 46 46 H 1.09000 * 113.49943 * 88.01766 * 27 18 17 47 47 H 1.09003 * 113.49778 * 218.55843 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6153 -0.0006 5 6 4.7937 1.4577 -0.0002 6 7 3.5998 -0.6693 0.0045 7 6 2.3635 -1.1263 -0.0005 8 6 1.9505 -2.5446 -0.0002 9 8 0.7698 -2.8339 0.0005 10 7 2.8829 -3.5179 -0.0008 11 6 2.4733 -4.9244 -0.0010 12 6 3.7158 -5.8174 -0.0023 13 1 4.3588 -5.5685 -0.8465 14 6 3.3068 -7.3115 -0.0597 15 6 4.5476 -7.9852 0.5915 16 6 4.9794 -6.9297 1.6214 17 6 6.4629 -6.9404 1.9828 18 7 6.0674 -6.6728 3.3754 19 6 6.6435 -6.0769 4.4653 20 1 7.5856 -5.5587 4.3625 21 6 6.0169 -6.1389 5.7024 22 7 6.6204 -5.6621 6.7704 23 14 4.3170 -6.8991 5.8512 24 1 3.9234 -6.9550 7.2820 25 1 3.3378 -6.0729 5.1004 26 1 4.3385 -8.2735 5.2896 27 6 4.7839 -7.3323 3.0846 28 8 4.4368 -5.6713 1.2346 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 2.0220 2.1138 -0.0004 33 1 5.0911 1.6659 1.0275 34 1 5.6026 0.9387 -0.5146 35 1 4.5792 2.3950 -0.5134 36 1 3.8250 -3.2870 -0.0017 37 1 1.8781 -5.1294 -0.8908 38 1 1.8787 -5.1298 0.8891 39 1 2.4071 -7.4950 0.5274 40 1 3.1749 -7.6429 -1.0897 41 1 5.3320 -8.1528 -0.1465 42 1 4.2712 -8.9182 1.0826 43 1 7.0271 -6.1265 1.5272 44 1 6.9369 -7.9121 1.8447 45 1 7.5314 -5.3349 6.7073 46 1 4.8029 -8.4102 3.2450 47 1 3.9298 -6.8494 3.5595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053598675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:52 Heat of formation + Delta-G solvation = 37.272848 kcal Electronic energy + Delta-G solvation = -29066.045423 eV Core-core repulsion = 25058.926623 eV Total energy + Delta-G solvation = -4007.118800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.66491 -41.58996 -40.41484 -38.35339 -35.78366 -34.86180 -34.51860 -33.22356 -32.88494 -31.05249 -29.29509 -28.70097 -27.40169 -27.13541 -25.22652 -23.53781 -22.68194 -22.53649 -21.65174 -21.00391 -20.79910 -19.60013 -18.74695 -17.92089 -17.48728 -17.34126 -17.23561 -16.93100 -16.18605 -16.03164 -15.57629 -15.46098 -15.31752 -15.01521 -14.70692 -14.46912 -14.33557 -14.21653 -14.13595 -13.72051 -13.42086 -13.36830 -13.34163 -13.23155 -13.04072 -12.67573 -12.58112 -12.47018 -12.21125 -11.94672 -11.84597 -11.69978 -11.30973 -11.18798 -11.12466 -11.07511 -10.37135 -10.25308 -10.11036 -9.70722 -9.24678 -8.65100 -5.48648 0.48327 1.13009 1.31703 1.43201 1.58114 1.62034 2.12063 2.32257 2.49395 2.61715 2.99922 3.17523 3.34099 3.47303 3.60117 3.72795 3.85677 3.89607 3.99453 4.13243 4.32818 4.37210 4.40377 4.45959 4.46309 4.52791 4.56778 4.56857 4.64244 4.66035 4.72702 4.81714 4.88487 4.91594 4.94433 5.02622 5.03274 5.12609 5.18406 5.19420 5.29583 5.34734 5.49423 5.89028 5.91686 6.25558 6.35270 6.67324 6.85526 7.10448 7.29818 8.25726 8.87271 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.003318 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.935698 B = 8437.393694 C = 9490.972928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.280 5.280 5 C 0.075 3.925 6 N -0.284 5.284 7 C -0.053 4.053 8 C 0.598 3.402 9 O -0.563 6.563 10 N -0.710 5.710 11 C 0.124 3.876 12 C 0.059 3.941 13 H 0.097 0.903 14 C -0.135 4.135 15 C -0.126 4.126 16 C 0.087 3.913 17 C 0.113 3.887 18 N -0.660 5.660 19 C -0.286 4.286 20 H 0.047 0.953 21 C -0.086 4.086 22 N -0.973 5.973 23 Si 1.109 2.891 24 H -0.302 1.302 25 H -0.290 1.290 26 H -0.250 1.250 27 C 0.080 3.920 28 O -0.370 6.370 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.228 0.772 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.136 0.864 36 H 0.410 0.590 37 H 0.105 0.895 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.123 0.877 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.040 0.960 44 H 0.078 0.922 45 H 0.246 0.754 46 H 0.078 0.922 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.466 9.185 -24.007 27.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.184 4.184 3 C -0.149 4.149 4 N -0.068 5.068 5 C -0.063 4.063 6 N -0.122 5.122 7 C -0.211 4.211 8 C 0.384 3.616 9 O -0.441 6.441 10 N -0.360 5.360 11 C 0.001 3.999 12 C 0.002 3.998 13 H 0.115 0.885 14 C -0.173 4.173 15 C -0.165 4.165 16 C 0.046 3.954 17 C -0.013 4.013 18 N -0.388 5.388 19 C -0.414 4.414 20 H 0.065 0.935 21 C -0.277 4.277 22 N -0.619 5.619 23 Si 0.936 3.064 24 H -0.230 1.230 25 H -0.218 1.218 26 H -0.174 1.174 27 C -0.045 4.045 28 O -0.290 6.290 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.245 0.755 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.154 0.846 36 H 0.246 0.754 37 H 0.122 0.878 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.142 0.858 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.058 0.942 44 H 0.095 0.905 45 H 0.055 0.945 46 H 0.096 0.904 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.120 8.686 -22.658 26.292 hybrid contribution 1.720 0.929 -0.207 1.966 sum -8.400 9.616 -22.865 26.188 Atomic orbital electron populations 1.20125 0.87357 1.03278 1.02227 1.20751 0.98415 0.90637 1.08581 1.23269 0.82703 1.01826 1.07119 1.45803 1.08891 1.03098 1.48998 1.22626 0.83411 0.94455 1.05800 1.73479 1.23059 0.95765 1.19910 1.21871 0.90706 0.94942 1.13590 1.17173 0.85147 0.83578 0.75752 1.90711 1.17715 1.83397 1.52320 1.45835 1.10246 1.06276 1.73641 1.21674 0.96361 0.78873 1.03014 1.23589 0.92131 0.96668 0.87394 0.88546 1.23266 0.98468 0.91174 1.04348 1.22926 0.98601 0.97788 0.97148 1.22908 0.93868 0.84845 0.93806 1.22938 0.95507 0.99356 0.83464 1.45978 1.16480 1.66671 1.09678 1.20004 1.05160 1.28865 0.87323 0.93465 1.26974 1.08998 1.01402 0.90331 1.71009 1.13866 1.47130 1.29876 0.83254 0.71667 0.77292 0.74201 1.22951 1.21825 1.17431 1.23435 0.89084 0.97270 0.94693 1.88437 1.70175 1.29854 1.40489 0.91928 0.88942 0.92233 0.75548 0.88885 0.88421 0.84594 0.75422 0.87755 0.92668 0.89868 0.85829 0.87564 0.87945 0.94162 0.90488 0.94547 0.90441 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 9.93 71.24 0.71 -0.81 16 2 C -0.17 -4.24 6.25 -19.73 -0.12 -4.37 16 3 C -0.01 -0.10 11.40 83.54 0.95 0.85 16 4 N -0.28 -5.48 3.70 -369.46 -1.37 -6.84 16 5 C 0.08 0.69 11.31 127.77 1.44 2.13 16 6 N -0.28 -7.96 11.67 -48.17 -0.56 -8.52 16 7 C -0.05 -1.61 7.13 42.46 0.30 -1.31 16 8 C 0.60 19.86 7.83 86.75 0.68 20.54 16 9 O -0.56 -20.72 15.12 -3.92 -0.06 -20.78 16 10 N -0.71 -21.34 5.53 -466.10 -2.58 -23.92 16 11 C 0.12 3.24 5.39 86.38 0.47 3.70 16 12 C 0.06 1.42 3.48 31.29 0.11 1.53 16 13 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 14 C -0.13 -2.34 6.58 32.14 0.21 -2.13 16 15 C -0.13 -2.60 6.39 31.67 0.20 -2.40 16 16 C 0.09 2.95 1.75 -10.67 -0.02 2.93 16 17 C 0.11 4.45 8.20 83.38 0.68 5.13 16 18 N -0.66 -34.30 3.70 -738.98 -2.73 -37.03 16 19 C -0.29 -17.95 11.08 84.03 0.93 -17.02 16 20 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 21 C -0.09 -5.49 5.50 84.86 0.47 -5.03 16 22 N -0.97 -66.49 13.70 21.65 0.30 -66.20 16 23 Si 1.11 58.13 25.17 68.60 1.73 59.85 16 24 H -0.30 -15.92 7.11 99.48 0.71 -15.22 16 25 H -0.29 -14.98 6.49 99.48 0.65 -14.33 16 26 H -0.25 -11.36 6.19 99.48 0.62 -10.74 16 27 C 0.08 3.40 5.17 83.48 0.43 3.83 16 28 O -0.37 -13.37 10.84 -148.98 -1.62 -14.99 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.52 6.72 -2.39 -0.02 1.50 16 32 H 0.23 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.14 0.13 8.13 -2.39 -0.02 0.11 16 36 H 0.41 12.29 8.20 -92.71 -0.76 11.53 16 37 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.49 8.05 -2.39 -0.02 1.47 16 40 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.11 1.69 8.13 -2.39 -0.02 1.67 16 42 H 0.10 1.84 7.81 -2.39 -0.02 1.82 16 43 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 44 H 0.08 2.62 8.13 -2.39 -0.02 2.60 16 45 H 0.25 16.78 8.73 -92.70 -0.81 15.97 16 46 H 0.08 2.95 7.42 -2.39 -0.02 2.93 16 47 H 0.04 1.80 4.78 -2.39 -0.01 1.79 16 Total: -1.00 -92.85 382.08 0.59 -92.26 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.04 Total: 18.57 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 7.45 Total: 7.59 kcal Atomic # 7 Polarization: -135.57 SS G_CDS: -6.94 Total: -142.51 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -1.67 Total: -35.76 kcal Atomic # 14 Polarization: 58.13 SS G_CDS: 1.73 Total: 59.85 kcal Total: -92.85 0.59 -92.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053598675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.532 kcal (2) G-P(sol) polarization free energy of solvation -92.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds